| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF007M19 | Sequence | 484 | 000399 (4) | pir|C96761|C96761 | 1e-32 | hypothetical protein T9L24.35 [imported] - Arabidopsis thaliana>gb:AE005173_8948 | 714 | 009555 (2) | gb:AY086278_1571331 | 1e-13 | Arabidopsis thaliana clone 23293 mRNA, complete sequence. |
| JMFF028J11 | Sequence | 554 | 000399 (4) | pir|C96761|C96761 | 1e-37 | hypothetical protein T9L24.35 [imported] - Arabidopsis thaliana>gb:AE005173_8948 | 717 | 009555 (2) | gb:AY080848_1568540 | 3e-16 | Arabidopsis thaliana unknown protein (At1g73460) mRNA, partial cds. |
| JMFS028G06 | Sequence | 676 | 000399 (4) | gb:AC147426_1744670 | 1e-61 | Oryza sativa chromosome 3 B1377B10 genomic sequence, complete sequence. | |||||
| JMFS147G09 | Sequence | 624 | 000399 (4) | gb:AC147426_1744670 | 3e-56 | Oryza sativa chromosome 3 B1377B10 genomic sequence, complete sequence. | |||||
This contig is upended
. : . : . : . : . : . :
JMFS028G06+ GCAGCCAAGCCATCATGATCAGCTCTCCTGTATATTTCAGTTACTGACAACNCCAT
____________________________________________________________
consensus GCAGCCAAGCCATCATGATCAGCTCTCCTGTATATTTCAGTTACTGACAACNCCAT
. : . : . : . : . : . :
JMFS028G06+ GGGATCATCTGCAGGCCCAACTCCATCAACAGCTTTTGACTTGATATACTGCTCCCCTGA
JMFS147G09+ CCTGA
____________________________________________________________
consensus GGGATCATCTGCAGGCCCAACTCCATCAACAGCTTTTGACTTGATATACTGCTCCCCTGA
. : . : . : . : . : . :
JMFS028G06+ AAAGTAAGAATCTTCTTCTGCAAAAGATTGGTCATCTTCTTCTCTGTTTTGACTTCTTTG
JMFS147G09+ AAAGTAAGAGTCTTCTTCTGCAAATGATTGGTCATCTTCTTCTCTGTTTTGACTTCTTTG
____________________________________________________________
consensus AAAGTAAGAGTCTTCTTCTGCAAATGATTGGTCATCTTCTTCTCTGTTTTGACTTCTTTG
. : . : . : . : . : . :
JMFS028G06+ AGGGTCAGGTACACTCCCATGTCCTGTTCCCTTCTCAGTGTCACTTGGGTAATCAATTTC
JMFS147G09+ AGGGTCAGGTACACTCCCATGTCCCGTTCCCTTCTCAGTATCACTTGGATAATCAATTTC
____________________________________________________________
consensus AGGGTCAGGTACACTCCCATGTCCTGTTCCCTTCTCAGTGTCACTTGGGTAATCAATTTC
. : . : . : . : . : . :
JMFS028G06+ ATGAGACAAAAACCAGGTCTCATCTTCAATAGGTTGCCTAGTGTAGCCTACATCATCATC
JMFS147G09+ ATGAGACAAAAACCAGGTCTCATCTTCAATAGGTTGCCTAGTGTAGCCTACATCATCATC
JMFF028J11+ CCTACATCATCATC
____________________________________________________________
consensus ATGAGACAAAAACCAGGTCTCATCTTCAATAGGTTGCCTAGTGTAGCCTACATCATCATC
. : . : . : . : . : . :
JMFS028G06+ ATCGTCATATTCATCAGAGTCCCAATATTCAGTTGGATAGTCAACAGGTTCACTAAGTCC
JMFS147G09+ ATCATCATATTCATCAGAGTCCCAATATTCAGTTGGATAGTCAACTGGTTCACTAAGTCC
JMFF028J11+ ATCATCATATTCATCAGAGTCCCAATATTCAGTTGGATAGTCAACTGGTTCACTAAGTCC
JMFF007M19+ GTCC
____________________________________________________________
consensus ATCATCATATTCATCAGAGTCCCAATATTCAGTTGGATAGTCAACTGGTTCACTAAGTCC
. : . : . : . : . : . :
JMFS028G06+ ACCAATAGTTGCGAAACCAGAAATAAGATCAGAAGTGTCCCCAGCAATTCCCTGACTCAC
JMFS147G09+ ACCAATAGTTGCAAAACCAGAAACAAGATCAGAAGTGTCCCCAACAATGCCCTGACTCAC
JMFF028J11+ ACCAATAGTTGCAAAACCAGAAACAAGATCAGAAGTGTCCCCAACAATGCCCTGACTCAC
JMFF007M19+ ACCAATAGTTGCAAAACCAGAAACAAGATCAGAAGTGTCCCCAACAATGCCCTGACTCAC
____________________________________________________________
consensus ACCAATAGTTGCAAAACCAGAAACAAGATCAGAAGTGTCCCCAACAATGCCCTGACTCAC
. : . : . : . : . : . :
JMFS028G06+ AGAGAACAAACTACCTTCCACAGGCCTTTTTCCACCTGAAGGGTTAATTTCTTGTCCTAC
JMFS147G09+ AGAGAGCAAACTACCTCCCACAAATCTTTTGCCACCTGAAGGGTTAATTTCTTGTCCTAC
JMFF028J11+ AGAGAGCAAACTACCTCCCACAAATCTTTTGCCACCTGAAGGGTTAATTTCTTGTCCTAC
JMFF007M19+ AGAGAGCAAACTACCTCCCACAAATCTTTTGCCACCTGAAGGGTTAATTTCTTGTCCTAC
____________________________________________________________
consensus AGAGAGCAAACTACCTCCCACAAATCTTTTGCCACCTGAAGGGTTAATTTCTTGTCCTAC
. : . : . : . : . : . :
JMFS028G06+ AGGAACATCCAGAAATGACCCTATAGGATAGCCTTTATCAGTATTAGAAATACTTAAGTC
JMFS147G09+ AGGAACATCCAGAAATGACCCAATAAGATAGGTTTGATCAGTACTAGAAATACTCAAGTC
JMFF028J11+ AGGAACATCCAGAAATGACCCAATAAGATAGGTTTGATCAGTACTAGAAATACTCAAGTC
JMFF007M19+ AGGAACATCCAGAAATGACCCAATAAGATAGGTTTGATCAGTACTAGAAATACTCAAGTC
____________________________________________________________
consensus AGGAACATCCAGAAATGACCCAATAAGATAGGTTTGATCAGTACTAGAAATACTCAAGTC
. : . : . : . : . : . :
JMFS028G06+ ATTTGAATCTCGTTCAAACTTTTCTACCCAATGAATATCAAATAGCTTCTCTTCTGATTT
JMFS147G09+ ATTTCCATCTCGTTCAAACTTTTCTACCCAATGAATATTAAACGGCTTCTCTTCTGATTT
JMFF028J11+ ATTTCCATCTCGTTCAAACTTTTCTACCCAATGAATATTAAACGGCTTCTCTTCTGATTT
JMFF007M19+ ATTTCCATCTCGTTCAAACTTTTCTACCCAATGAATATTAAACGGCTTCTCTTCTGATTT
____________________________________________________________
consensus ATTTCCATCTCGTTCAAACTTTTCTACCCAATGAATATTAAACGGCTTCTCTTCTGATTT
. : . : . : . : . : . :
JMFS028G06+ GAGTCTAACAGGTGGTAATCTGGGTAGCTCTTCCTTTTGGTTCTCTGATCCAAGTGGAAG
JMFS147G09+ GAGTCTAACAGGTGGTAATCTAGGTAGCTCTTCCGTTTGGTTCTCTGATCCAAGTGGAAG
JMFF028J11+ GAGTCTAACAGGTGGTAATCTAGGTAGCTCTTCCGTTTGGTTCTCTGATCCAAGTGGAAG
JMFF007M19+ GAGTCTAACAGGTGGTAATCTAGGTAGCTCTTCCGTTTGGTTCTCTGATCCAAGTGGAAG
____________________________________________________________
consensus GAGTCTAACAGGTGGTAATCTAGGTAGCTCTTCCGTTTGGTTCTCTGATCCAAGTGGAAG
. : . : . : . : . : . :
JMFS028G06+ GC
JMFS147G09+ GCTAAAGCCAGAAAGATCCTTTGGCTCACTTCCATGTGCTCTCACAAAGTACAAAGCTCT
JMFF028J11+ GCTAAAGCCAGAAAGATCCTTTGGCTCACTTCCATGTGCTCTCACAAAGTACAAAGCTCT
JMFF007M19+ GCTAAAGCCAGAAAGATCCTTTGGCTCACTTCCATGTGCTCTCACAAAGTACAAAGCTCT
____________________________________________________________
consensus GCTAAAGCCAGAAAGATCCTTTGGCTCACTTCCATGTGCTCTCACAAAGTACAAAGCTCT
. : . : . : . : . : . :
JMFS147G09+ TCCAATTTCATCCACTTGC
JMFF028J11+ TCCAATTTCATCCACTTGCTCTTTGATAGCTGCCTTAATGTCAGTAATCTCTGGTTTTCT
JMFF007M19+ TCCAATTTCATCCACTTGCTCTTTGATAGCTGCCTTAATGTCAGTAATCTCTGGTTTTCT
____________________________________________________________
consensus TCCAATTTCATCCACTTGCTCTTTGATAGCTGCCTTAATGTCAGTAATCTCTGGTTTTCT
. : . : . : . : . : . :
JMFF028J11+ CTTCTCTTCATTTTTATCACCAATTACAATTTTATGATCATAACTCGTTGATACATCTTC
JMFF007M19+ CTTCTCTTCATTTTTATCACCAATTACAATTTTATGATCATAACTCGTTGATACATCTTC
____________________________________________________________
consensus CTTCTCTTCATTTTTATCACCAATTACAATTTTATGATCATAACTCGTTGATACATCTTC