Previous Contig 000287:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005M19Sequence455000287 (3)gb:AY084796_15698806e-11Arabidopsis thaliana clone 118233 mRNA, complete sequence.707008399 (3)pir|T48234|T482341e-50hypothetical protein T7H20.180 - Arabidopsis thaliana>gb:ATT7H20_1556428 Arabido
JMFF015E11Sequence591000287 (3)pir|T48234|T482342e-22hypothetical protein T7H20.180 - Arabidopsis thaliana>gb:ATT7H20_1556428 Arabido710008399 (3)pir|T48234|T482341e-50hypothetical protein T7H20.180 - Arabidopsis thaliana>gb:ATT7H20_1556428 Arabido
JMFF035K02Sequence541000287 (3)pir|T48234|T482348e-19hypothetical protein T7H20.180 - Arabidopsis thaliana>gb:ATT7H20_1556428 Arabido713008399 (3)pir|T48234|T482343e-51hypothetical protein T7H20.180 - Arabidopsis thaliana>gb:ATT7H20_1556428 Arabido

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF015E11+ GTCGCAAGCATACATTCACAATTACTGACGAAGCATCATCTTGACCCAGTTC
                      ____________________________________________________________
consensus GTCGCAAGCATACATTCACAATTACTGACGAAGCATCATCTTGACCCAGTTC
 
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JMFF035K02+ TAAATGAAGTCCAACAAGTGCCTCCGAGGCAGCAACTCTAACAATTGTTGAAGACGAGCT
JMFF015E11+ TAAATGAAGTCCAACAAGTGCCTCCGAGGCAGCAACTCTAACAATTGTTGAAGACGAGCT
                      ____________________________________________________________
consensus TAAATGAAGTCCAACAAGTGCCTCCGAGGCAGCAACTCTAACAATTGTTGAAGACGAGCT
 
. : . : . : . : . : . :
JMFF035K02+ TAATTGTTGAATTTTCTGAAGTTTCTCAATTGCTTCTTCATAATT-CCCACTATTATATA
JMFF015E11+ TAATTGTTGAATTTTCTGAAGTTTCTCAATTGCTTCTTCATAATT-CCCACTATTATATA
JMFF005M19+ TCAATTGCTTCTTCATAATTCCCCACTATTATATA
                      ____________________________________________________________
consensus TAATTGTTGAATTTTCTGAAGTTTCTCAATTGCTTCTTCATAATT-CCCACTATTATATA
 
. : . : . : . : . : . :
JMFF035K02+ ATAATGTAGACATCGCGAGTAAAACCATCCCTCTAGCATTCTCATCGGAGTTAGTAGAGT
JMFF015E11+ ATAATGTAGACATCGCGAGTAAAACCATCCCTCTAGCATTCTCATCGGAGTTAGTAGAGT
JMFF005M19+ ATAATGTAGACATCGCGAGTAAAACCATCCCTCTAGCATTCTCATCGGAGTTAGTAGAGT
                      ____________________________________________________________
consensus ATAATGTAGACATCGCGAGTAAAACCATCCCTCTAGCATTCTCATCGGAGTTAGTAGAGT
 
. : . : . : . : . : . :
JMFF035K02+ AGCACTGCTCCAACACCAACTGAGCTTGAGCATACGCATCATCTGATTTTTTAGAACGGG
JMFF015E11+ AGCACTGCTCCAACACCAACTGAGCTTGAGCATACGCATCATCTGATTTTTTAGAACGGG
JMFF005M19+ AGCACTGCTCCAACACCAACTGAGCTTGAGCATACGCATCATCTGATTTTTTAGAACGGG
                      ____________________________________________________________
consensus AGCACTGCTCCAACACCAACTGAGCTTGAGCATACGCATCATCTGATTTTTTAGAACGGG
 
. : . : . : . : . : . :
JMFF035K02+ CGAGAGAGAGAGCGTAATTTGTCATCTCAAGAGCAACAGGGTTAACCTTGAAAGATCTGT
JMFF015E11+ CGAGAGAGAGAGCGTAATTTGTCATCTCAAGAGCAACAGGGTTAACCTTGAAAGATCTGT
JMFF005M19+ CGAGAGAGAGAGCGTAATTTGTCATCTCAAGAGCAACAGGGTTAACCTTGAAAGATCTGT
                      ____________________________________________________________
consensus CGAGAGAGAGAGCGTAATTTGTCATCTCAAGAGCAACAGGGTTAACCTTGAAAGATCTGT
 
. : . : . : . : . : . :
JMFF035K02+ CTAGGTCGGTTTTATCCGAGAAAACTCTACGCGGCGGTGGCGCCGCTACTGCTGGTGGCC
JMFF015E11+ CTAGGTCGGTTTTATCCGAGAAAACTCTACGCGGCGGTGGCGCCGCTACTGCTGGTGGCC
JMFF005M19+ CTAGGTCGGTTTTATCCGAGAAAACTCTACGCGGCGGTGGCGCCGCTACTGCTGGTGGCC
                      ____________________________________________________________
consensus CTAGGTCGGTTTTATCCGAGAAAACTCTACGCGGCGGTGGCGCCGCTACTGCTGGTGGCC
 
. : . : . : . : . : . :
JMFF035K02+ GGAGAAGAGCGAATGCAGAGCCAAGCCTTCTGGCTCTGCAGAGCTTATCTCCGATTCTAA
JMFF015E11+ GGAGAAGAGCGAATGCAGAGCCAAGCCTTCTGGCTCTGCAGAGCTTATCTCCGATTCTAA
JMFF005M19+ GGAGAAGAGCGAATGCAGAGCCAAGCCTTCTGGCTCTGCAGAGCTTATCTCCGATTCTAA
                      ____________________________________________________________
consensus GGAGAAGAGCGAATGCAGAGCCAAGCCTTCTGGCTCTGCAGAGCTTATCTCCGATTCTAA
 
. : . : . : . : . : . :
JMFF035K02+ TCATGGAGCTGGTGGTGGTTATTTCTCCGTCTTCCCCCTCTGCTGATCACTGCAGGGAAA
JMFF015E11+ TCATGGAGCTGGTGGTGGTTATTTCTCCGTCTTCCCCCTCTGCTGATCACTGCAGGGAAA
JMFF005M19+ TCATGGAGCTGGTGGTGGTTATTTCTCCGTCTTCCCCCTCTGCTGATCACTGCAGGGAAA
                      ____________________________________________________________
consensus TCATGGAGCTGGTGGTGGTTATTTCTCCGTCTTCCCCCTCTGCTGATCACTGCAGGGAAA
 
. : . : . : . : . : . :
JMFF035K02+ ACAAAAACCCTAAATTGCAATCAAAGGGTTTATCAAAATTTCCACCTATTTTTCCTACAT
JMFF015E11+ ACAAAAACCCTAAATTGCAATCAAAGGGTTTATCAAAATTTCCACCTATTTTTCCTACAT
JMFF005M19+ ACAAAAACCCTAAATTGCAATCAAAGGGTTTATCAAAATTTCCACCTATTTTTCCTACAT
                      ____________________________________________________________
consensus ACAAAAACCCTAAATTGCAATCAAAGGGTTTATCAAAATTTCCACCTATTTTTCCTACAT