| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004E21 | Sequence | 489 | 000188 (11) | gb:NSU96497_1691215 | 8e-26 | Nicotiana sylvestris ATPase beta subunit (nsatp2.2.1) mRNA, nuclear gene encodin | 745 | 010770 (11) | gb:U96498_1726632 | 5e-63 | Nicotiana sylvestris ATPase beta subunit (nsatp2.2.1) gene, nuclear gene encodin |
| JMFF028C23 | Sequence | 600 | 000188 (11) | gb:NSU96497_1691215 | 9e-56 | Nicotiana sylvestris ATPase beta subunit (nsatp2.2.1) mRNA, nuclear gene encodin | 657 | 010770 (11) | gb:U96498_1726632 | 2e-49 | Nicotiana sylvestris ATPase beta subunit (nsatp2.2.1) gene, nuclear gene encodin |
| JMFF034C13 | Sequence | 594 | 000188 (11) | gb:NSU96497_1691215 | 1e-59 | Nicotiana sylvestris ATPase beta subunit (nsatp2.2.1) mRNA, nuclear gene encodin | 697 | 010770 (11) | gb:U96498_1726632 | 1e-56 | Nicotiana sylvestris ATPase beta subunit (nsatp2.2.1) gene, nuclear gene encodin |
| JMFF047M06 | Sequence | 430 | 000188 (11) | gb:U96498_1726632 | 3e-14 | Nicotiana sylvestris ATPase beta subunit (nsatp2.2.1) gene, nuclear gene encodin | 245 | 010770 (11) | |||
| JMFS082F08 | Sequence | 618 | 000188 (11) | gb:NSU96497_1691215 | 1e-69 | Nicotiana sylvestris ATPase beta subunit (nsatp2.2.1) mRNA, nuclear gene encodin | |||||
| JMSF008I20 | Sequence | 296 | 000188 (11) | gb:U96498_1726632 | 3e-05 | Nicotiana sylvestris ATPase beta subunit (nsatp2.2.1) gene, nuclear gene encodin | 725 | 010770 (11) | gb:U96498_1726632 | 9e-64 | Nicotiana sylvestris ATPase beta subunit (nsatp2.2.1) gene, nuclear gene encodin |
| JMSF014O09 | Sequence | 318 | 000188 (11) | gb:U96498_1726632 | 1e-10 | Nicotiana sylvestris ATPase beta subunit (nsatp2.2.1) gene, nuclear gene encodin | 669 | 000188 (11) | gb:NSU96497_1691215 | 3e-52 | Nicotiana sylvestris ATPase beta subunit (nsatp2.2.1) mRNA, nuclear gene encodin |
| JMSF020M20 | Sequence | 688 | 000188 (11) | gb:NSU96497_1691215 | 2e-71 | Nicotiana sylvestris ATPase beta subunit (nsatp2.2.1) mRNA, nuclear gene encodin | 775 | 010770 (11) | gb:U96498_1726632 | 3e-73 | Nicotiana sylvestris ATPase beta subunit (nsatp2.2.1) gene, nuclear gene encodin |
| JMSF031N15 | Sequence | 639 | 000188 (11) | gb:NSU96497_1691215 | 4e-63 | Nicotiana sylvestris ATPase beta subunit (nsatp2.2.1) mRNA, nuclear gene encodin | 678 | 010770 (11) | gb:U96498_1726632 | 7e-55 | Nicotiana sylvestris ATPase beta subunit (nsatp2.2.1) gene, nuclear gene encodin |
| JMSF043D01 | Sequence | 581 | 000188 (11) | gb:NSU96497_1691215 | 3e-60 | Nicotiana sylvestris ATPase beta subunit (nsatp2.2.1) mRNA, nuclear gene encodin | 740 | 010770 (11) | gb:U96498_1726632 | 2e-58 | Nicotiana sylvestris ATPase beta subunit (nsatp2.2.1) gene, nuclear gene encodin |
This contig is upended
. : . : . : . : . : . :
rJMSF014O09- GTTCAGAGTTCACATTGTAAAGCCATGAATCGCAATTGTAATATG
____________________________________________________________
consensus GTTCAGAGTTCACATTGTAAAGCCATGAATCGCAATTGTAATATG
. : . : . : . : . : . :
rJMSF014O09- AATACAGAGTAAAAATGAAATAGCAAACCATCAGAATAAAGCACCAATCTTTATGAATGA
JMFF028C23+ CTCCCCAAT-GACATTGATGA
JMFF034C13+ CAAT-GACATTGATGA
JMSF043D01+ CCAAT-GACATTGATGA
JMSF031N15+ CTCATCA-ATGGCCTCCCCAAT-GACATTGATGA
____________________________________________________________
consensus AATACAGAGTAAAAATGAAATAGCAACTCATCAGATTGCCTCCCCAAT-GACATTGATGA
. : . : . : . : . : . :
rJMSF014O09- TGAAGAAAATGAATAGGCC---AGATCACTCACAGTGATTGGAGAGCCGGTATTAAGCAC
JMFF028C23+ T-ACGCCCAAGAGTGGCCCNTACCAACAGGAACAGTGATTGGAGAGCCGGTATTAAGCAC
JMFS082F08+ ACAGTGATTGGAGAGCCGGTATTAAGCAC
JMFF034C13+ T-ACGCCCAAGAGTGGCCN-TACCAACAGGAACAGTGATTGGAGAGCCGGTATTAAGCAC
JMSF043D01+ T-ACGCCCAAGAGTGGCCC-TACCAACAGGAACAGTGATTGGAGAGCCGGTATTAAGCAC
JMSF020M20+ ACAGTGATTGGAGAGCCGGTATTAAGCAC
JMSF031N15+ T-ACGCCCAAGAGTGGCCC-TACCAACAGGAACAGTGATTGGAGAGCCGGTATTAAGCAC
____________________________________________________________
consensus T-ACGCCCAAGAGTGGCCC-TACCAACAGGAACAGTGATTGGAGAGCCGGTATTAAGCAC
. : . : . : . : . : . :
rJMSF014O09- ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
JMFF028C23+ ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
JMFS082F08+ ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
JMFF034C13+ ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
JMSF043D01+ ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
JMSF020M20+ ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
JMSF031N15+ ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
____________________________________________________________
consensus ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
. : . : . : . : . : . :
rJMSF014O09- ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
JMFF028C23+ ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
JMFS082F08+ ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
JMFF034C13+ ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
JMSF043D01+ ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
JMSF020M20+ ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
JMSF031N15+ ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
JMFF004E21+ CTCAAGCGC
____________________________________________________________
consensus ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
. : . : . : . : . : . :
rJMSF014O09- CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
JMFF028C23+ CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
JMFS082F08+ CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
JMFF034C13+ CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
JMSF043D01+ CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
JMSF020M20+ CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
JMSF031N15+ CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
JMFF047M06+ CAATAACCTG
JMFF004E21+ CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
____________________________________________________________
consensus CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
. : . : . : . : . : . :
rJMSF014O09- GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMFF028C23+ GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMFS082F08+ GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMFF034C13+ GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMSF043D01+ GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMSF020M20+ GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMSF014O09+ CCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMSF031N15+ GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMFF047M06+ GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMSF008I20+ CCTTCCCNATAGAACCGNCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMFF004E21+ GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
____________________________________________________________
consensus GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
. : . : . : . : . : . :
rJMSF014O09- ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMFF028C23+ ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMFS082F08+ ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMFF034C13+ ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMSF043D01+ ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMSF020M20+ ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMSF014O09+ ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMSF031N15+ ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMFF047M06+ ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMSF008I20+ ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAANTAGAGTAACGAGC
JMFF004E21+ ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
____________________________________________________________
consensus ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
. : . : . : . : . : . :
rJMSF014O09- GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMFF028C23+ GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMFS082F08+ GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMFF034C13+ GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMSF043D01+ GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMSF020M20+ GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMSF014O09+ GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMSF031N15+ GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMFF047M06+ GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMSF008I20+ GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGNCCTAGTTAG
JMFF004E21+ GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
____________________________________________________________
consensus GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
. : . : . : . : . : . :
rJMSF014O09- GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMFF028C23+ GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMFS082F08+ GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMFF034C13+ GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMSF043D01+ GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMSF020M20+ GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMSF014O09+ GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMSF031N15+ GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMFF047M06+ GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMSF008I20+ GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMFF004E21+ GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
____________________________________________________________
consensus GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
. : . : . : . : . : . :
rJMSF014O09- TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMFF028C23+ TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMFS082F08+ TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMFF034C13+ TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMSF043D01+ TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMSF020M20+ TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMSF014O09+ TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMSF031N15+ TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMFF047M06+ TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMSF008I20+ TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAG
JMFF004E21+ TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
____________________________________________________________
consensus TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
. : . : . : . : . : . :
rJMSF014O09- AAGAAAGAGGAGAAGGAGAGACT
JMFF028C23+ AAGAAAGAGGAGAAGGAGAGACTGCTAGGGTTTGAGGGAAT
JMFS082F08+ AAGAAAGA
JMFF034C13+ AAGAAAGAGGAGAAGGAGAGACTGCTAGGGTTTGAGGGAAT
JMSF043D01+ AAGAAAGAGGAGAAGGAGAGACTGC
JMSF020M20+ AAGAAAGAGGAGAAGGAGAGACTGCTAGGGTTTGAGGGAATGAGAAGGGTGATGTTTATC
JMSF014O09+ AAGAAAGAGGAGAAGGAGAGACT
JMSF031N15+ AAGAAAGAGGAGAAGGAGAGACTGCTAGGGTTTGAGGGAATGAGAAGGGTGATGTTTATC
JMFF047M06+ AAGAAAGAGGAGAAGGAGAGACTGCTAGGGTTTGAGGGAATGAGAAGGGTGATGTTTATC
JMFF004E21+ AAGAAAGAGGAGAAGGAGAGACTGCTAGGGTTTGAGGGAATGAGAAGGGTGATGTTTATC
____________________________________________________________
consensus AAGAAAGAGGAGAAGGAGAGACTGCTAGGGTTTGAGGGAATGAGAAGGGTGATGTTTATC
. : . : . : . : . : . :
JMSF020M20+ T
JMSF031N15+ T
JMFF047M06+ TAGACGGTCAAAAAGAGCAGAGCGAGAGTTGTGCGTTTCGATCTCATTACTCGGCACCTT
JMFF004E21+ TAGACGGTCAAAAAGAGCAGAGCGAGAGTTGTGCGTTTCGATCTCATTACTCGGCACCTT
____________________________________________________________
consensus TAGACGGTCAAAAAGAGCAGAGCGAGAGTTGTGCGTTTCGATCTCATTACTCGGCACCTT