| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003O06 | Sequence | 518 | 000162 (8) | ||||||||
| JMFF016I21 | Sequence | 644 | 000162 (8) | gb:AY505498_1609845 | 2e-34 | Zea mays glossy1 protein gene, complete cds. | 726 | 001272 (7) | gb:AP003565_1830898 | 9e-61 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJN |
| JMFF020H15 | Sequence | 428 | 000162 (8) | 707 | 001272 (7) | gb:AP003565_1830898 | 2e-63 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJN | |||
| JMFS109G07 | Sequence | 619 | 000162 (8) | ||||||||
| JMFS150F12 | Sequence | 614 | 000162 (8) | gb:AY505498_1609845 | 5e-32 | Zea mays glossy1 protein gene, complete cds. | |||||
| JMSF033E11 | Sequence | 646 | 000162 (8) | gb:AB099512_1526144 | 7e-37 | Arabidopsis thaliana FLP1 mRNA for faceless pollen-1, complete cds.>gb:AB116548_ | 749 | 001272 (7) | gb:AP003565_1830898 | 8e-58 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJN |
| JMSF043K04 | Sequence | 805 | 000162 (8) | gb:AB099512_1526144 | 3e-32 | Arabidopsis thaliana FLP1 mRNA for faceless pollen-1, complete cds.>gb:AB116548_ | 777 | 001272 (7) | gb:AP003565_1830898 | 1e-63 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJN |
| JMSF050P09 | Sequence | 704 | 000162 (8) | gb:AB099512_1526144 | 5e-75 | Arabidopsis thaliana FLP1 mRNA for faceless pollen-1, complete cds.>gb:AB116548_ | 706 | 001272 (7) | gb:AP003565_1830898 | 2e-60 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJN |
This contig is upended
. : . : . : . : . : . :
JMSF050P09+ TTCCCGAGCAT
____________________________________________________________
consensus TTCCCGAGCAT
. : . : . : . : . : . :
JMSF050P09+ ATCATAGAGAGGCATAAAGAGGCAAAAATTAGTCCTTTTATCCATATGGTGTAGACCGTA
____________________________________________________________
consensus ATCATAGAGAGGCATAAAGAGGCAAAAATTAGTCCTTTTATCCATATGGTGTAGACCGTA
. : . : . : . : . : . :
JMSF050P09+ GTACGTTGGGCTATAAATAAGGTACTTGAGAACTGGAATAGTCTTGAAGAGGTGACTAGG
____________________________________________________________
consensus GTACGTTGGGCTATAAATAAGGTACTTGAGAACTGGAATAGTCTTGAAGAGGTGACTAGG
. : . : . : . : . : . :
JMSF050P09+ CATGATTTCAACATTGCTATACCCCAAACATCTAAGAAAATCAAATGCCAAAATATAACT
____________________________________________________________
consensus CATGATTTCAACATTGCTATACCCCAAACATCTAAGAAAATCAAATGCCAAAATATAACT
. : . : . : . : . : . :
JMSF050P09+ GTAGATAACGATTATCGAACCATGTCCAAGAAACGCGGTTCCCAGCGTTGGAATTCCTAC
____________________________________________________________
consensus GTAGATAACGATTATCGAACCATGTCCAAGAAACGCGGTTCCCAGCGTTGGAATTCCTAC
. : . : . : . : . : . :
JMSF050P09+ AATTACACACAGTAACAGATGTTCCAGAAATGCTGCACTGCCCGCTGTAAATGGATGCGG
____________________________________________________________
consensus AATTACACACAGTAACAGATGTTCCAGAAATGCTGCACTGCCCGCTGTAAATGGATGCGG
. : . : . : . : . : . :
JMSF050P09+ AACTTTAGAATCATGGTGTAGCCAATGATAAAGTGGATACAGATCGGAGCTATGCAATAA
____________________________________________________________
consensus AACTTTAGAATCATGGTGTAGCCAATGATAAAGTGGATACAGATCGGAGCTATGCAATAA
. : . : . : . : . : . :
JMSF050P09+ TCTATGCATCAAATAGTAAAGCGGCTCTGAGAATCCCATATGCAAAACGAGACAGTAAAC
JMSF033E11+ GAATCCCATATGCAAAACGAGACAGTAAAC
____________________________________________________________
consensus TCTATGCATCAAATAGTAAAGCGGCTCTGAGAATCCCATATGCAAAACGAGACAGTAAAC
. : . : . : . : . : . :
JMSF050P09+ AACCCCTTTAAATTCCCAGGTGGGGAGATTAGCCAAGGAA-GGGAAGCTCATATAGGCAA
JMSF033E11+ AACCCCTTTAAATTCCCAGGTGGGGAGATTAGCCAAGGAA-GGGAAGCTCATATAGGCAA
JMFS150F12+ GGGAGATTAGCCAAGGAA-GGGAAGCTCATATAGGCAA
JMFF016I21+ TGGGGAGATTAGCCAAGGAA-GGGAAGCTCATATAGGCAA
JMSF043K04+ TGGGGAGATTAGCCAAGGAAGGGGAAGCTCATATAGGCAA
____________________________________________________________
consensus AACCCCTTTAAATTCCCAGGTGGGGAGATTAGCCAAGGAA-GGGAAGCTCATATAGGCAA
. : . : . : . : . : . :
JMSF050P09+ ATGAAGCCAAAATCGCTTGAAGTATTAGGAAATTGTCCCAATGCCATTCCTTGTCGATTT
JMSF033E11+ ATGAAGCCAAAATCGCTTGAAGTATTAGGAAATTGTCCCAATGCCATTCCTTGTCGATTT
JMFS150F12+ ATGAAGCCANAATCGCTTGAAGTATTAGGAAATTGTCCCAATGCCATTCCTTGTCGATTT
JMFF016I21+ ATGAAGCCAAAATCGCTTGAAGTATTAGGAAATTGTCCCAATGCCATTCCTTGTCGATTT
JMSF043K04+ ATGAAGCCAAAATCGCTTGAAGTATTAGGAAATTGTCCCAATGCCATTCCTTGTCGATTT
____________________________________________________________
consensus ATGAAGCCAAAATCGCTTGAAGTATTAGGAAATTGTCCCAATGCCATTCCTTGTCGATTT
. : . : . : . : . : . :
JMSF050P09+ GTTCAAAATCTATGCCTTGTTGAGACACCCTTTTTGCCCGGTTAAAGAATAGCATATTAC
JMSF033E11+ GTTCAAAATCTATGCCTTGTTGAGACACCCTTTTTGCCCGGTTAAAGAATAGCATATTAC
JMFS150F12+ GTTCAAAATCTATGCCTTGTTGAGACACCCTTTTTGCCCGGTTAAAGAATAGCATATTAC
JMFF016I21+ GTTCAAAATCTATGCCTTGTTGAGACACCCTTTTTGCCCGGTTAAAGAATAGCATATTAC
JMSF043K04+ GTTCAAAATCTATGCCTTGTTGAGACACCCTTTTTGCCCGGTTAAAGAATAGCATATTAC
____________________________________________________________
consensus GTTCAAAATCTATGCCTTGTTGAGACACCCTTTTTGCCCGGTTAAAGAATAGCATATTAC
. : . : . : . : . : . :
JMSF050P09+ TGTAAGAACTCCACAACTGATGAACAAGGCCTCTCAGCCCAGTAAGAACAAGAATATGTA
JMSF033E11+ TGTAAGAACTCCACAACTGATGAACAAGGCCTCTCAGCCCAGTAAGAACAAGAATATGTA
JMFS150F12+ TGTAAGAACTCCACAACTGATGAACAAGGCCTCTCAGCCCAGTAAGAACAAGAATATGTA
JMFF016I21+ TGTAAGAACTCCACAACTGATGAACAAGGCCTCTCAGCCCAGTAAGAACAAGAATATGTA
JMSF043K04+ TGTAAGAACTCCACAACTGATGAACAAGGCCTCTCAGCCCAGTAAGAACAAGAATATGTA
____________________________________________________________
consensus TGTAAGAACTCCACAACTGATGAACAAGGCCTCTCAGCCCAGTAAGAACAAGAATATGTA
. : . : . : . : . : . :
JMSF050P09+ AGCACCAAATATCCTCCCAGCTCTCTTTCCAAAC
JMSF033E11+ AGCACCAAATATCCTCCCAGCTCTCTTTCCAAACCAGAGAATATATGAATTTTGCAATCA
JMFS150F12+ AGCACCAAATATCCTCCCAGCTCTCTTTCCAAACCAGAGAATATATGAATTTTGCAATCA
JMFF016I21+ AGCACCAAATATCTTCCCAGCTCTCTTTCCAAACCAGAGAATATATGAATTTTGCAATCA
JMSF043K04+ AGCACCAAATATCCTCCCAGCTCTCTTTCCAAACCAGAGAATATATGAATTTTGCAATCA
____________________________________________________________
consensus AGCACCAAATATCCTCCCAGCTCTCTTTCCAAACCAGAGAATATATGAATTTTGCAATCA
. : . : . : . : . : . :
JMSF033E11+ ATGGTCCACATAACAAATACTTGAAATTTCCCAGGTTCTCCCATGGCCAAGCAAACAAGG
JMFS150F12+ ATGGTCCACATAACAAATACTTGAAATTTCCCAGGTTCTCCCATGGCCAAGCAAACAAGG
JMFF016I21+ ATGGTCCACATAACAAATACTTGAAATTTCCCAGGTTCTCCCATGGCCAAGCAAACAAGG
JMSF043K04+ ATGGTCCACATAACAAATACTTGAAATTTCCCAGGTTCTCCCATGGCCAAGCAAACAAGG
____________________________________________________________
consensus ATGGTCCACATAACAAATACTTGAAATTTCCCAGGTTCTCCCATGGCCAAGCAAACAAGG
. : . : . : . : . : . :
JMSF033E11+ CTGCATCTTTCTTCCTCATAAGAGTATTTCCTTCCTCCTCTTTGTGAACAGCACCATTTT
JMFS150F12+ CTGCATCTTTCTTCCTCATAAGAGTATTTCCTTCCTCCTCTTTGTGAACAGCACCATTTT
JMFF016I21+ CTGCATCTTTCTTCCTCATAAGAGTATTTCCTTCCTCCTCTTTGTGAACAGCACCATTTT
JMSF043K04+ CTGCATCTTTCTTCCTCATAAGAGTATTTCCTTCCTCCTCTTTGTGAACAGCACCATTTT
____________________________________________________________
consensus CTGCATCTTTCTTCCTCATAAGAGTATTTCCTTCCTCCTCTTTGTGAACAGCACCATTTT
. : . : . : . : . : . :
JMSF033E11+ CTTTCCCCATTTCACTGGAAAACCTGTGTGTTCTTGAAATCCAATACAGATTGATGACCT
JMFS150F12+ CTTTCCCCATTTCACTGGAAAACCTGTGTGTTCTTGAAATCCAATACAGATTGATGACCT
JMFF016I21+ CTTTCCCCATTTCACTGGAAAACCTGTGTGTTCTTGAAATCCAATACAGATTGATGACCT
JMSF043K04+ CTTTCCCCATTTCACTGGAAAACCTGTGTGTTCTTGAAATCCAATACAGATTGATGACCT
____________________________________________________________
consensus CTTTCCCCATTTCACTGGAAAACCTGTGTGTTCTTGAAATCCAATACAGATTGATGACCT
. : . : . : . : . : . :
JMSF033E11+ CACCAAACAGGCAAAAAGGAGAAAAAGGGTATAAATAGTAAAGAATTCAAACAAGATTGG
JMFS150F12+ CACCAAACAGGCAAAAAGGAGAAAAAGGGTATAAATAGTAAAGAATTCAAACAAGATTGG
JMFF016I21+ CACCAAACAGGCAAAAAGGAGAAAAAGGGTATAAATAGTAAAGAATTCAAACAAGATTGG
JMSF043K04+ CACCAAACAGGCAAAAAGGAGAAAAAGGGTATAAATAGTAAAGAATTCAAACAAGATTGG
JMFS109G07+ AAGATTGG
____________________________________________________________
consensus CACCAAACAGGCAAAAAGGAGAAAAAGGGTATAAATAGTAAAGAATTCAAACAAGATTGG
. : . : . : . : . : . :
JMSF033E11+ AGAGGGGATATAAAGGAAAGCAATTGAAGTTGAAAACAGACAAAACAAAAGAAGGTTTCC
JMFS150F12+ AGAGGGGATATAAAGGAAAGCAATTGAAGTTGAAAACAGACAAAACAAAAGAAGGTTTCC
JMFF016I21+ AGAGGGGATATAAAGGAAAGCAATTGAAGTTGAAAACAGACAAAACAAAAGAAGGTTTCC
JMSF043K04+ AGAGGGGATATAAAGGAAAGCAATTGAAGTTGAAAACAGACAAAACAAAAGAAGGTTTCC
JMFS109G07+ AGAGGGGATATAAAGGAAAGCAATTGAAGTTGAAAACAGACAAAACAAAAGAAGGTTTCC
____________________________________________________________
consensus AGAGGGGATATAAAGGAAAGCAATTGAAGTTGAAAACAGACAAAACAAAAGAAGGTTTCC
. : . : . : . : . : . :
JMSF033E11+ CCTTGTTGTTGGATCT
JMFS150F12+ CCTTGTTGTTGGATCTGTACAACCCAGTTTTCCTATC
JMFF016I21+ CCTTGTTGTTGGATCTGTACAACCCAGTTTTCCTATCTACCCTCTTTATGGTTCT
JMSF043K04+ CCTTGTTGTTGGATCTGTACAACCCAGTTTTCCTATCTACCCTCTTTATGTTTCTTCTAG
JMFS109G07+ CCTTGTTGTTGGATCTGTACAACCCAGTTTTCCTATCTACCCTCTTTATGTTTCTTCTAG
____________________________________________________________
consensus CCTTGTTGTTGGATCTGTACAACCCAGTTTTCCTATCTACCCTCTTTATGTTTCTTCTAG
. : . : . : . : . : . :
JMSF043K04+ GCTTGTAGATAGCCAGAGTATTATACAAGTAGCCCCCAAAGACAGAAACTTACAAGGCTG
JMFS109G07+ GCTTGTAGATAGCCAGAGTATTATACAAGTAGCCCCCAAAGACAGAAACTTACAAGGCTG
JMFF003O06+ ATACAAGTAGCCCCCAAAGACAGAAACTTACAAGGCTG
____________________________________________________________
consensus GCTTGTAGATAGCCAGAGTATTATACAAGTAGCCCCCAAAGACAGAAACTTACAAGGCTG
. : . : . : . : . : . :
JMSF043K04+ GGTTTACAGTTGGATTTCCCAATCATAAATTCATTAAGATTAACATCTCTTCTCCTTTCT
JMFS109G07+ GGTTTACAGTTGGATTTCCCAATCATAAATTCATTAAGATTAACATCTCTTCTCCTTTCT
JMFF020H15+ TCCTTTCT
JMFF003O06+ GGTTTACAGTTGGATTTCCCAATCATAAATTCATTAAGATTAACATCTCTTCTCCTTTCT
____________________________________________________________
consensus GGTTTACAGTTGGATTTCCCAATCATAAATTCATTAAGATTAACATCTCTTCTCCTTTCT
. : . : . : . : . : . :
JMSF043K04+ TTTGGCATAGAACAAATTTCCCACCTATTCAAATTGACAGGC
JMFS109G07+ TTTGGCATAGAACAAATTTCCCACCTATTCAAATTGACAGGCACCCAATTATCATAACCA
JMFF020H15+ TTTGGCATAGAACAAATTTCCCACCTATTCAAATTGACAGGCNCCCAATTATCATAACCA
JMFF003O06+ TTTGGCATAGAACAAATTTCCCNCCTATTCAAATTGACAGGCNCCCAATTATCATAACCA
____________________________________________________________
consensus TTTGGCATAGAACAAATTTCCCACCTATTCAAATTGACAGGCACCCAATTATCATAACCA
. : . : . : . : . : . :
JMFS109G07+ AAATTGGGTCATTGATATATCTCCACGTTTTGCCCAAGCTGACAGCTATACGGTCTATAA
JMFF020H15+ AAATTGGGTCATTGATATATCTCCACGTTTTGCCCAAGCTGACAGCTATACGGTNTATAA
JMFF003O06+ AAATTGGGTCATTGATATATCTCCACGTTTTGCCCAAGCTGACAGCTATACGGTNTATAA
____________________________________________________________
consensus AAATTGGGTCATTGATATATCTCCACGTTTTGCCCAAGCTGACAGCTATACGGTCTATAA
. : . : . : . : . : . :
JMFS109G07+ CCTAAGAAATTAATGCGATATGGTAGTTTTGGAGAAATTATAAATGGTTATCTGGCTGGC
JMFF020H15+ CCTAAGAAATTAATGCGATATGGTAGTTTTGGAGAAATTATAAATGGTTATCTGGCTGGC
JMFF003O06+ CCTAAGAAATTAATGCGATATGGTAGTTTTGGAGAAATTATAAATGGTTATNTGGCTGGC
____________________________________________________________
consensus CCTAAGAAATTAATGCGATATGGTAGTTTTGGAGAAATTATAAATGGTTATCTGGCTGGC
. : . : . : . : . : . :
JMFS109G07+ TAATTGTGTGGATTAAGAAAGTTGGTGGTGGGTTGCAGTTGAGAAGGGTTCAGTTTCCTT
JMFF020H15+ TAATTGTGTGGATTAAGAAAGTTGGTGGTGGGTTGCAGTTGAGAAGGGTTCAGTTTCCTT
JMFF003O06+ TAATTGTGTGGATTAAGAAAGTTGGTGGTGGGTTGCAGTTGAGAAGGGTTCAGTTTCCTT
____________________________________________________________
consensus TAATTGTGTGGATTAAGAAAGTTGGTGGTGGGTTGCAGTTGAGAAGGGTTCAGTTTCCTT
. : . : . : . : . : . :
JMFS109G07+ TCTACATCACAGACTTTAATCAAAAACGAAAAAAAAC-AAAAAAAAATTGGATCTTTCAA
JMFF020H15+ TNTACATCACAGACTTTAATCAAAAACGAAAAAAAACAAAAAAAAAATTGGATCTTTCAA
JMFF003O06+ TNTACATCACAGACTTTAATCAAAAACGAAAAAAAACAAAAAAAAAATTGGATCTTTCAA
____________________________________________________________
consensus TCTACATCACAGACTTTAATCAAAAACGAAAAAAAACAAAAAAAAAATTGGATCTTTCAA
. : . : . : . : . : . :
JMFS109G07+ GAAAATCTGGGGAAAAAAATGGAGACTGGGTGTGAATGGAAGCAAAATCTACGGGTCAAG
JMFF020H15+ GAAAATCTGGGGAAAAAAATGGAGACTGGGTGTGAATGGAAGCAAAATCTACGGGTCAAG
JMFF003O06+ GAAAATCTGGGGAAAAAAATGGAGACTGGGTGTGAATGGAAGCAAAATCTACGGGTCAAG
____________________________________________________________
consensus GAAAATCTGGGGAAAAAAATGGAGACTGGGTGTGAATGGAAGCAAAATCTACGGGTCAAG
. : . : . : . : . : . :
JMFS109G07+ TGGACTAAAGGA
JMFF020H15+ TGGACTAAAGGAGGATTATTCTGCTAAGTATTACTGTAACAATTAAGAAGAGCAGTATAC
JMFF003O06+ TGGACTAAAGGAGGATTATTCTGCTAAGTATTACTGTAACAATTAAGAAGAGCAGTATAC
____________________________________________________________
consensus TGGACTAAAGGAGGATTATTCTGCTAAGTATTACTGTAACAATTAAGAAGAGCAGTATAC