Contig 014137:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP006B11Sequence436014137 (2)ref|XP_010528407.1|1e-27PREDICTED: ninja-family protein AFP3 [Tarenaya hassleriana] ref|XP_010528409.1|
JMCP013D12Sequence219014137 (2)

Alignment

This contig is upended


. : . : . : . : . : . :
JMCP013D12+ CTTAATAATAATCCCC
JMCP006B11+ CTTAATAATAATCCCC
                      ____________________________________________________________
consensus CTTAATAATAATCCCC
 
. : . : . : . : . : . :
JMCP013D12+ AATaataATACTCTCGATAATGGCGGCAGATTTTCATCAATGtgaCAGAAAAGAAGAAAA
JMCP006B11+ AATTTATATACTCTCGATAATGGCGGCAGATTTTCATCAATGACTCAGAAAAGAAGAAAA
                      ____________________________________________________________
consensus AATTTATATACTCTCGATAATGGCGGCAGATTTTCATCAATGACTCAGAAAAGAAGAAAA
 
. : . : . : . : . : . :
JMCP013D12+ GAGCAGTTCCAACTTTGATGGGAagacAAAagTGTACAAAacCATAGAGCTTacAATAGG
JMCP006B11+ GAGCAGTTCCAACTTTGATGGGATCTGAAATCTGTACAAATGCATAGAGCTTTGAATAGG
                      ____________________________________________________________
consensus GAGCAGTTCCAACTTTGATGGGATCTGAAATCTGTACAAATGCATAGAGCTTTGAATAGG
 
. : . : . : . : . : . :
JMCP013D12+ GTAAAttttttagAAAAagatgaGATAAgacgcaaCaacCGAGAcCagacaacaaacCta
JMCP006B11+ GTAAAAAAAAATCAAAATCTACTGATAACTGCGTTCTTGCGAGAGCTCTGTTGTTTGCAT
                      ____________________________________________________________
consensus GTAAAAAAAAATCAAAATCTACTGATAACTGCGTTCTTGCGAGAGCTCTGTTGTTTGCAT
 
. : . : . : . : . : . :
JMCP013D12+ tCAGtTAAAAGAGGAAAttCAAC
JMCP006B11+ ACAGATAAAAGAGGAAAAACAACATTAATCTCAAATCGCACCCTCCATTTTCGGAGTGGT
                      ____________________________________________________________
consensus ACAGATAAAAGAGGAAAAACAACATTAATCTCAAATCGCACCCTCCATTTTCGGAGTGGT
 
. : . : . : . : . : . :
JMCP006B11+ AACCATTAAAACAGACAAGACGGGGAAACGATGATATGCTTCAACGGGTGCGCCACGTCA
                      ____________________________________________________________
consensus AACCATTAAAACAGACAAGACGGGGAAACGATGATATGCTTCAACGGGTGCGCCACGTCA
 
. : . : . : . : . : . :
JMCP006B11+ CCGCCGCCGGCGTGCTTCACGAACTCCGCCGGCGACAGAAAGTTCCCATGGCAGACGCAT
                      ____________________________________________________________
consensus CCGCCGCCGGCGTGCTTCACGAACTCCGCCGGCGACAGAAAGTTCCCATGGCAGACGCAT
 
. : . : . : . : . : . :
JMCP006B11+ ACTATCCTCACTTCCTCCCCCTTCCGATATCTGTACAAGAACCCCTCTATCTTCTTCCCC
                      ____________________________________________________________
consensus ACTATCCTCACTTCCTCCCCCTTCCGATATCTGTACAAGAACCCCTCTATCTTCTTCCCC