Contig 014088:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022J12Sequence678002414 (7)643014088 (3)dbj|BAF64710.1|5e-08putative transposase [Ipomoea tricolor]
JMSF023D11Sequence681002414 (7)735014088 (3)dbj|BAF64710.1|3e-23putative transposase [Ipomoea tricolor]
JMSF043K11Sequence785002414 (7)681014088 (3)dbj|BAF64710.1|1e-19putative transposase [Ipomoea tricolor]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF022J12+ AANCNAATTCGTGNTAGGAAAAGTNAAAACAAAAAATAGAGTGT
                      ____________________________________________________________
consensus AANCNAATTCGTGNTAGGAAAAGTNAAAACAAAAAATAGAGTGT
 
. : . : . : . : . : . :
rJMSF023D11+ TTACCTTGTTA
rJMSF022J12+ GGATGTATTATCTTTTNTNTANGAAAGATATGTCNTTAGGNTAGTGNGGTNACCTNGTTA
rJMSF043K11+ TTACCTTGTTA
                      ____________________________________________________________
consensus GGATGTATTATCTTTTNTNTANGAAAGATATGTCNTTAGGNTAGTGNGGTTACCTTGTTA
 
. : . : . : . : . : . :
rJMSF023D11+ TATTTTTTGTAGAGGAGGTTAGCAGGATTCCTACCAAGTCTGAACACTCCCTATCCCATA
rJMSF022J12+ TATTTNTTGTAGAGGAGGTTAGCAGGATTCCTACCNNGTNTGANCNCTCCCTATCCCATA
rJMSF043K11+ TATTTTTTGTAGAGGAGGTTAGCAGGATTCCTACCAAGTCTGAACACTCCCTATCCCATA
                      ____________________________________________________________
consensus TATTTTTTGTAGAGGAGGTTAGCAGGATTCCTACCAAGTCTGAACACTCCCTATCCCATA
 
. : . : . : . : . : . :
rJMSF023D11+ AAAGGAAGGGAGCATCTGATAATCCTTTATCCATAACCCTCACAATTACCCTATATCTTG
rJMSF022J12+ AAAGGAAGGGAGCNTCTGNTANTCCNTTATCCNTAACCCTCACAATTACCNTATATCTNG
rJMSF043K11+ AAAGGAAGGGAGCATCTGATAATCCTTTATCCATAACCCTCACAATTACCCTATATCTTG
                      ____________________________________________________________
consensus AAAGGAAGGGAGCATCTGATAATCCTTTATCCATAACCCTCACAATTACCCTATATCTTG
 
. : . : . : . : . : . :
rJMSF023D11+ CCATTCCTTCCTTGAACTTTTTATCACAATTAGAACAAATTAGATCCTCACCATCTGGTT
rJMSF022J12+ CCATTCNTTCCNTGNACTTTTNATCACAATTAGNACAAATTAGATCCTCACCATCNGGTT
rJMSF043K11+ CCATTCCTTCCTTGAACTTTTTATCACAATTAGAACAAATTAGATCCTCACCATCTGGTT
                      ____________________________________________________________
consensus CCATTCCTTCCTTGAACTTTTTATCACAATTAGAACAAATTAGATCCTCACCATCTGGTT
 
. : . : . : . : . : . :
rJMSF023D11+ TCAGTTTTCTATTGCAACCTGAGGTTATGCAAGATATGTACATCCAACCAAAAGAACCTT
rJMSF022J12+ TCAGNTNNNTATTGCAACNNGAGGTTATGCNAGATATGTACATCCAACCAAAAGAACCTT
rJMSF043K11+ TCAGTTTTCTATTGCAACCTGAGGTTATGCAAGATATGTACATCCAACCAAAAGAACCTT
                      ____________________________________________________________
consensus TCAGTTTTCTATTGCAACCTGAGGTTATGCAAGATATGTACATCCAACCAAAAGAACCTT
 
. : . : . : . : . : . :
rJMSF023D11+ CAATTCCTACAATTTGTGCAGGAACATAAAAATCTCCATCCTGCATTGAACCAAGAAATT
rJMSF022J12+ CAATTCCTNCAATTNGTGCAGGAACNTAAAAATCTCCATCCTGCNTNGNACCANGNAATT
rJMSF043K11+ CAATTCCTACAATTTGTGCAGGAACATAAAAATCTCCATCCTGCATTGAACCAAGAAATT
                      ____________________________________________________________
consensus CAATTCCTACAATTTGTGCAGGAACATAAAAATCTCCATCCTGCATTGAACCAAGAAATT
 
. : . : . : . : . : . :
rJMSF023D11+ GTTTAGTAGCATTGGCCATTAATTAGTATCACTGGTAAGAAATATAAAAATATAAGAATA
rJMSF022J12+ GTTTNGTAGCNTTGGCCNTTAATTAGTATCACTGGTAAGAAATATCAAAATATANGAATA
rJMSF043K11+ GTTTAGTAGCATTGGCCATTAATTAGTATCACTGGTAAGAAATATAAAAATATAAGAATA
                      ____________________________________________________________
consensus GTTTAGTAGCATTGGCCATTAATTAGTATCACTGGTAAGAAATATAAAAATATAAGAATA
 
. : . : . : . : . : . :
rJMSF023D11+ GTAGAACAACTTTAACCTGTTTGTTTTTCAATAAATCACCAACTGAGGTGACAGTCAGAG
rJMSF022J12+ GNAGAACAACNTTAACCTGTTTGTTTTTCAATAAATCACCAACTGAGGTGACAGTCAGAG
rJMSF043K11+ GTAGAACAACTTTAACCTGTTTGTTTTTCAATAAATCACCAACTGAGGTGACAGTCAGAG
                      ____________________________________________________________
consensus GTAGAACAACTTTAACCTGTTTGTTTTTCAATAAATCACCAACTGAGGTGACAGTCAGAG
 
. : . : . : . : . : . :
rJMSF023D11+ CACCACTCCTGAATTCTGAAATCCTAGTGGA-CTGGGACATAACTGCACTTGTGGTAATA
rJMSF022J12+ CACCACTCCCGAATTCNGAAATCCTAGTGGATCTGGGACATAACTGCACTTGTGGTAATA
rJMSF043K11+ CACCACTCCTGAATTCTGAAATCCTAGTGGA-CTGGGACATAACTGCACTTGTGGTAATA
                      ____________________________________________________________
consensus CACCACTCCTGAATTCTGAAATCCTAGTGGA-CTGGGACATAACTGCACTTGTGGTAATA
 
. : . : . : . : . : . :
rJMSF023D11+ CTTCTTAAAAGGACTATGAAC
rJMSF022J12+ CTTCTTNAAAGGACTATGAACAGTTGTTATCCTCCNGAAACCCAAAAAATAAATAAATA
rJMSF043K11+ CTTCTTAAAAGGACTATGAACAGTTGTTATCCTACAGAAACCCAAAAAATAAATAAATAC
                      ____________________________________________________________
consensus CTTCTTAAAAGGACTATGAACAGTTGTTATCCTCCAGAAACCCAAAAAATAAATAAATAC