| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF032L06 | Sequence | 568 | 006663 (4) | emb|CDO97607.1| | 2e-73 | unnamed protein product [Coffea canephora] | 741 | 014074 (4) | ref|XP_009588823.1| | 1e-11 | PREDICTED: zinc finger CCCH domain-containing protein 49-like [Nicotiana toment |
| JMFF034B13 | Sequence | 610 | 014074 (4) | ref|XP_002280897.1| | 3e-05 | PREDICTED: zinc finger CCCH domain-containing protein 49 [Vitis vinifera] | |||||
| JMSF025B20 | Sequence | 617 | 006663 (4) | emb|CDO97607.1| | 2e-83 | unnamed protein product [Coffea canephora] | 784 | 014074 (4) | ref|XP_002280897.1| | 2e-11 | PREDICTED: zinc finger CCCH domain-containing protein 49 [Vitis vinifera] |
| JMSF041N04 | Sequence | 780 | 006663 (4) | emb|CDO97607.1| | 2e-122 | unnamed protein product [Coffea canephora] | 609 | 014074 (4) | ref|XP_007201008.1| | 7e-05 | hypothetical protein PRUPE_ppa005371mg [Prunus persica] gb|EMJ02207.1| hypotheti |
This contig is upended
. : . : . : . : . : . :
rJMFF032L06+ GGGGAAGNCCACAGGCNNCAAAGCNN
____________________________________________________________
consensus GGGGAAGNCCACAGGCNNCAAAGCNN
. : . : . : . : . : . :
rJMFF032L06+ GAGTTNGAGATCNNTGATGAAGCAAGACAGCAGGNTNNTGTGGNTCATAGTGGTTTGTTG
rJMSF025B20+ TGATGAAGCAAGACAGCAGGCTACTGTGGCTCATAGTGGTTTGTTG
____________________________________________________________
consensus GAGTTNGAGATCNNTGATGAAGCAAGACAGCAGGCTACTGTGGCTCATAGTGGTTTGTTG
. : . : . : . : . : . :
rJMFF032L06+ CCAAGGGNTGTGATATCACAGCAGCAGAACCAGCCTNTCCCGCTCCNTGGTGGTAGCCAG
rJMFF034B13+ CTCCNTGGTGGTAGCCAG
rJMSF025B20+ CCAAGGGCTGTGATATCACAGCAGCAGAACCAGCCTCTCCCGCTCCCTGGTGGTAGCCAG
____________________________________________________________
consensus CCAAGGGCTGTGATATCACAGCAGCAGAACCAGCCTCTCCCGCTCCCTGGTGGTAGCCAG
. : . : . : . : . : . :
rJMFF032L06+ GACCAACCTCCACCACCTATGCCTTACTTCAACATTCCACCAATGCCTCAGCCGGACAGG
rJMFF034B13+ GACCAACCTCCACCACNTATGCCTTACTTCAACATTCCACCAATGCCTCAGCCGGACAGG
rJMSF025B20+ GACCAACCTCCACCACCTATGCCTTACTTCAACATTCCACCAATGCCTCAGCCGGACAGG
rJMSF041N04+ GG
____________________________________________________________
consensus GACCAACCTCCACCACCTATGCCTTACTTCAACATTCCACCAATGCCTCAGCCGGACAGG
. : . : . : . : . : . :
rJMFF032L06+ GCATTGTATCCTTNTATGGATCCTCAAAGAATGGGAGCCGTTGTTCCATCACATGAAGGT
rJMFF034B13+ GCATTGTATCCTTNTATGGATCCTCAAAGAATGGGAGCCGTTGTTCCATCACATGAAGGT
rJMSF025B20+ GCATTGTATCCTTCTATGGATCCTCAAAGAATGGGAGCCGTTGTTCCATCACATGAAGGT
rJMSF041N04+ GCATTGTATCCTTCTATGGATCCTCAAAGAATGGGAGCCGTTGTTCCATCACATGAAGGT
____________________________________________________________
consensus GCATTGTATCCTTCTATGGATCCTCAAAGAATGGGAGCCGTTGTTCCATCACATGAAGGT
. : . : . : . : . : . :
rJMFF032L06+ GCTGCTTCAGGGTCGGGCGAAAATAGAAGTGGTCCTGATAAGCAACCCCCACATGGACAC
rJMFF034B13+ GCTGCTTCAGGGTCGGGCGAAAATAGAAGTGGTCCTGATAAGCAACCCCCACATGGACAC
rJMSF025B20+ GCTGCTTCAGGGTCGGGCGAAAATAGAAGTGGTCCTGATAAGCAACCCCCACATGGACAC
rJMSF041N04+ GCTGCTTCAGGGTCGGGCGAAAATAGAAGTGGTCCTGATAAGCAACCCCCACATGGACAC
____________________________________________________________
consensus GCTGCTTCAGGGTCGGGCGAAAATAGAAGTGGTCCTGATAAGCAACCCCCACATGGACAC
. : . : . : . : . : . :
rJMFF032L06+ CATTTTGCTTATCCGCCTGGGCCACCACCACCCCAGGGCCAATTTTACCCACCTTATTAT
rJMFF034B13+ CATTTTGCTTATCCGCCTGGGCCACCACCACCCCAGGGCCAATTTTACCCACCTTATTAT
rJMSF025B20+ CATTTTGCTTATCCGCCTGGGCCACCACCACCCCAGGGCCAATTTTACCCACCTTATTAT
rJMSF041N04+ CATTTTGCTTATCCGCCTGGGCCACCACCACCCCAGGGCCAATTTTACCCACCTTATTAT
____________________________________________________________
consensus CATTTTGCTTATCCGCCTGGGCCACCACCACCCCAGGGCCAATTTTACCCACCTTATTAT
. : . : . : . : . : . :
rJMFF032L06+ CCACACTATGGGTATATCCCACCTCCCCCACCGTCTTATCAACAGTACCCTCCTCCACCT
rJMFF034B13+ CCACACTATGGGTATATCCCACCTCCCCCACCGTCTTATCAACAGTACCCTCCTCCACCT
rJMSF025B20+ CCACACTATGGGTATATCCCACCTCCCCCACCGTCTTATCAACAGTACCCTCCTCCACCT
rJMSF041N04+ CCACACTATGGGTATATCCCACCTCCCCCACCGTCTTATCAACAGTACCCTCCTCCACCT
____________________________________________________________
consensus CCACACTATGGGTATATCCCACCTCCCCCACCGTCTTATCAACAGTACCCTCCTCCACCT
. : . : . : . : . : . :
rJMFF032L06+ TATCAGGCTACAGTGCCTCCACCACCTCCCGGCGGCAGCCAGGCACCACCTATGCAGCAG
rJMFF034B13+ TATCAGGCTACAGTGCCTCCACCACCTCCCGGCGGCAGCCAGGCACCACCTATGCAGCAG
rJMSF025B20+ TATCAGGCTACAGTGCCTCCACCACCTCCCGGCGGCAGCCAGGCACCACCTATGCAGCAG
rJMSF041N04+ TATCAGGCTACAGTGCCTCCACCACCTCCCGGCGGCAGCCAGGCACCACCTATGCAGCAG
____________________________________________________________
consensus TATCAGGCTACAGTGCCTCCACCACCTCCCGGCGGCAGCCAGGCACCACCTATGCAGCAG
. : . : . : . : . : . :
rJMFF032L06+ TCACAGCCCGGAGCAGGCCAGCAAAGGCCAGTACCACAAGGACCAGGACAACAAGAACCG
rJMFF034B13+ TCACAGCCCGGAGCAGGCCAGCAAAGGCCAGTACCACAAGGACCAGGACAACAAGAACCG
rJMSF025B20+ TCACAGCCCGGAGCAGGCCAGCAAAGGCCAGTACCACAAGGACCAGGACAACAAGAACCG
rJMSF041N04+ TCACAGCCCGGAGCAGGCCAGCAAAGGCCAGTACCACAAGGACCAGGACAACAAGAACCG
____________________________________________________________
consensus TCACAGCCCGGAGCAGGCCAGCAAAGGCCAGTACCACAAGGACCAGGACAACAAGAACCG
. : . : . : . : . : . :
rJMFF032L06+ GGACAACAGTCTTAATACCTGCACCCTTGTTACTGTTGGCTTAATTGCTGTTGTCAGAAA
rJMFF034B13+ GGACAACAGTCTTAATACCTGCACCCTTGTTACTGTTGGCTTAATTGCTGTTGTCAGAAA
rJMSF025B20+ GGACAACAGTCTTAATACCTGCACCCTTGTTACTGTTGGCTTAATTGCTGTTGTCAGAAA
rJMSF041N04+ GGACAACAGTCTTAATACCTGCACCCTTGTTACTGTTGGCTTAATTGCTGTTGTCAGAAA
____________________________________________________________
consensus GGACAACAGTCTTAATACCTGCACCCTTGTTACTGTTGGCTTAATTGCTGTTGTCAGAAA
. : . : . : . : . : . :
rJMFF032L06+ ATAATTACTTTTTCTGGTCTAGTCTTTGCCTTAATTACTGTTGTCAGAAGATAATTACTT
rJMFF034B13+ ATAATTACTTTTTCTGGTCTAGTCTTTGCCTTAATTACTGTTGTCAGAAGATAATTACTT
rJMSF025B20+ ATAATTACTTTTTCTGGTCTAGTCTTTGCCTTAATTACTGTTGTCAGAAGATAATTACTT
rJMSF041N04+ ATAATTACTTTTTCTGGTCTAGTCTTTGCCTTAATTACTGTTGTCAGAAGATAATTACTT
____________________________________________________________
consensus ATAATTACTTTTTCTGGTCTAGTCTTTGCCTTAATTACTGTTGTCAGAAGATAATTACTT
. : . : . : . : . : . :
rJMFF032L06+ TTCTGGTCTAGTCTTTGCCATTTAAACTCTAAGAAATTGACTTTGT
rJMFF034B13+ TTCTGGTCTAGTCTTTGCCATTTAAACTCTAAGAAATTGACTTTGT
rJMSF025B20+ TTCTGGTCTAGTCTTTGCCATTTAAACTCTAAGAAATTGACTTTGTTGAGCGACTTAAGA
rJMSF041N04+ TTCTGGTCTAGTCTTTGCCATTTAAACTCTAAGAAATTGACTTTGTTGAGCGACTTAAGA
____________________________________________________________
consensus TTCTGGTCTAGTCTTTGCCATTTAAACTCTAAGAAATTGACTTTGTTGAGCGACTTAAGA
. : . : . : . : . : . :
rJMSF025B20+ TTTGTTTCTTACAATTTTACATGACCCCAGCGGTGATTATGTAATGAATATGTCTGAAA
rJMSF041N04+ TTTGTTTCTTACAATTTTACATGACCCCAGCGGTGATTATGTAATGAATATGTCTGAAAC
____________________________________________________________
consensus TTTGTTTCTTACAATTTTACATGACCCCAGCGGTGATTATGTAATGAATATGTCTGAAAC