Contig 014068:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP016A08Sequence290014068 (2)gb|EQQ61334.1|4e-63hypothetical protein G771_05432, partial [Escherichia coli HVH 110 (4-6978754)]
JMSF041B03Sequence693010799 (4)ref|XP_007050704.1|8e-58Mitochondrial transcription termination factor family protein isoform 1 [Theobr612014068 (2)ref|WP_032158755.1|1e-113transposase, partial [Escherichia coli]

Alignment

This contig is upended


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rJMSF041B03+                                                          GTCGAGTAAGAG
                      ____________________________________________________________
consensus                                                             GTCGAGTAAGAG
 
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rJMSF041B03+          GAAAAGTACAATANGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATG
                      ____________________________________________________________
consensus             GAAAAGTACAATANGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATG
 
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rJMCP016A08+                                                          AAAGCAATCCAA
rJMSF041B03+          ATATGTCATCTAGTCACTCAAAGACTTTAGGNTATAAGAGGCTGACTAAAAGCAATTCAA
                      ____________________________________________________________
consensus             ATATGTCATCTAGTCACTCAAAGACTTTAGGNTATAAGAGGCTGACTAAAAGCAATTCAA
 
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rJMCP016A08+          TCTCATGCCtttaagataacaATAAATCTCGCTgTAAAGGCCGAAAAAATCAGCGCTCGA
rJMSF041B03+          TNTCATGCCAAATTNTATTGTATAAATCTCGCTNTAAAGGCCGAANAAATCAGNGCTCGA
                      ____________________________________________________________
consensus             TCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGA
 
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rJMCP016A08+          CACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGgcaCGGCAAAGGAGCCAa
rJMSF041B03+          CACGGACTCATTGTCACCNCCCGTCNCCTAAAATNTANTCAGCGTCGGCAAAGGAGCCAT
                      ____________________________________________________________
consensus             CACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCAT
 
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rJMCP016A08+          cGcTTCTAGCAACattgaatggacagcttATTgcttgtgggtttgttgaacaTAATAagT
rJMSF041B03+          GGGTTNTAGCAACTAACTTACCTGTTGAAATTNGAACANCCAANCAACTTGTTAATATCT
                      ____________________________________________________________
consensus             GGGTTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCT
 
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rJMCP016A08+          ATTCGAAGCGAtacCActaacttGAAACCTTCCGAGACaacAAAAGTCgacCCTACGGAC
rJMSF041B03+          ATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGAN
                      ____________________________________________________________
consensus             ATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGAC
 
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rJMCP016A08+          TAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGT                      
rJMSF041B03+          TAGGCNTNCGCCATAGCNGAACGAGCAGCTCAGAGCGTTTTGATATCATGNTGNTANTCG
                      ____________________________________________________________
consensus             TAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGNTGNTANTCG
 
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rJMSF041B03+          CCNTGATGNTTCAANTAACATGTTGGCTTGCGGGCGTTCATGNTCAGAANCAAGGNTGGG
                      ____________________________________________________________
consensus             CCNTGATGNTTCAANTAACATGTTGGCTTGCGGGCGTTCATGNTCAGAANCAAGGNTGGG
 
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rJMSF041B03+          ACAAGCACTTCCNGGCTAACNCAGTCAGAAATCGNAANGTACTCTCAACAGTTCGCTTNG
                      ____________________________________________________________
consensus             ACAAGCACTTCCNGGCTAACNCAGTCAGAAATCGNAANGTACTCTCAACAGTTCGCTTNG
 
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rJMSF041B03+          GCATGGAAGTTTTNCGGCATTCTGGNTACAGCAATAAGCAAGGGAAGACNTATCTCGTGG
                      ____________________________________________________________
consensus             GCATGGAAGTTTTNCGGCATTCTGGNTACAGCAATAAGCAAGGGAAGACNTATCTCGTGG