| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF021P18 | Sequence | 651 | 005073 (4) | ref|XP_009763656.1| | 6e-96 | PREDICTED: uncharacterized protein LOC104215532 isoform X4 [Nicotiana sylvestri | 788 | 014050 (3) | ref|XP_004242889.1| | 214 | PREDICTED: uncharacterized protein LOC101257579 [Solanum lycopersicum] |
| JMSF028E08 | Sequence | 619 | 005073 (4) | ref|XP_009763656.1| | 2e-93 | PREDICTED: uncharacterized protein LOC104215532 isoform X4 [Nicotiana sylvestri | 692 | 014050 (3) | ref|XP_006372225.1| | 4e-14 | tRNA pseudouridine synthase family protein [Populus trichocarpa] gb|ERP50022.1| |
| JMSF038H09 | Sequence | 658 | 005073 (4) | ref|XP_009763656.1| | 4e-99 | PREDICTED: uncharacterized protein LOC104215532 isoform X4 [Nicotiana sylvestri | 894 | 014050 (3) | ref|XP_004242889.1| | 224 | PREDICTED: uncharacterized protein LOC101257579 [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF038H09+ TTCTGCCAAATGGAGGCGATACTTGTACATCTTCCCTTAGAGCAAGAGGACTGC
____________________________________________________________
consensus TTCTGCCAAATGGAGGCGATACTTGTACATCTTCCCTTAGAGCAAGAGGACTGC
. : . : . : . : . : . :
rJMSF021P18+ TTCATCAACCGAATCNATGT
rJMSF038H09+ CAACATAGGAAGGATGTTACAGATAAATATTGTTCTAATGTTCATCAACCGAATCAATGT
____________________________________________________________
consensus CAACATAGGAAGGATGTTACAGATAAATATTGTTCTAATGTTCATCAACCGAATCAATGT
. : . : . : . : . : . :
rJMSF021P18+ GCTGACAATGATGAATGTGTAGTTGGTAATGCCGAGGGTGAAGTGGTTCCTGGCAACAAA
rJMSF038H09+ GCTGACAATGATGAATGTGTAGTTGGTAATGCCGAGGGTGAAGTGGTTCCTGGCAACAAA
____________________________________________________________
consensus GCTGACAATGATGAATGTGTAGTTGGTAATGCCGAGGGTGAAGTGGTTCCTGGCAACAAA
. : . : . : . : . : . :
rJMSF021P18+ CCTACTAGGTTTGAAGTAAGCAAGGTTAACCACTTACTGCGCCAATTAGAAGGAAAGCTT
rJMSF038H09+ CCTACTAGGTTTGAAGTAAGCAAGGTTAACCACTTACTGCGCCAATTAGAAGGAAAGCTT
____________________________________________________________
consensus CCTACTAGGTTTGAAGTAAGCAAGGTTAACCACTTACTGCGCCAATTAGAAGGAAAGCTT
. : . : . : . : . : . :
rJMSF021P18+ TTATCCTACAAAATGTTTGCACGAGATACTAAACCCTCAAGGAACATTGGTCCACCAACA
rJMSF038H09+ TTATCCTACAAAATGTTTGCACGAGATACTAAACCCTCAAGGAACATTGGTCCACCAACA
____________________________________________________________
consensus TTATCCTACAAAATGTTTGCACGAGATACTAAACCCTCAAGGAACATTGGTCCACCAACA
. : . : . : . : . : . :
rJMSF021P18+ GAGCGCTTTGTCTTCCATGCCCGAGCTATTGAGGTCTCATTACCATGTGCAAAGGATGGG
rJMSF038H09+ GAGTGCTTTGTCTTCCATGCCCGAGCTATTGAGGTCTCATTACCATGTGCAAAGGATGGG
____________________________________________________________
consensus GAGTGCTTTGTCTTCCATGCCCGAGCTATTGAGGTCTCATTACCATGTGCAAAGGATGGG
. : . : . : . : . : . :
rJMSF021P18+ AGTCATACGAAGACAATGTGCATTGAGTTGGTTGCTAACCGGTTTTTGCGCAAGATGGTT
rJMSF028E08+ AGATGGTT
rJMSF038H09+ AGTCATACGAAGACAATGTGCATTGAGTTGGTTGCTAACCGGTTTTTGCGCAAGATGGTT
____________________________________________________________
consensus AGTCATACGAAGACAATGTGCATTGAGTTGGTTGCTAACCGGTTTTTGCGCAAGATGGTT
. : . : . : . : . : . :
rJMSF021P18+ CGAGTTCTTGTTGCAACAGCAATCAGGGAAGCAGTTGCCGGTGCAGATGAAGATGCATTA
rJMSF028E08+ CGAGTTCTTGTTGCAACAGCAATCAGGGAAGCAGTTGCCGGTGCAGATGAAGATGCATTA
rJMSF038H09+ CGAGTTCTTGTTGCAACAGCAATCAGGGAAGCAGTTGCCGGTGCAGATGAAGATGCATTA
____________________________________________________________
consensus CGAGTTCTTGTTGCAACAGCAATCAGGGAAGCAGTTGCCGGTGCAGATGAAGATGCATTA
. : . : . : . : . : . :
rJMSF021P18+ CTGAAGCTGATGGATGCCACTTGCAGGCGCGCCACTGCTCCACCTGCACCACCAGACGGC
rJMSF028E08+ CTGAAGCTGATGGATGCCACTTGAAGGCGCGCCACTGCTCCACCTGCACCACCAGACGGC
rJMSF038H09+ CTGAAGCTGATGGATGCCACTTGCAGGCGCGCCACTGCTCCACCTGCACCACCAGACGGC
____________________________________________________________
consensus CTGAAGCTGATGGATGCCACTTGCAGGCGCGCCACTGCTCCACCTGCACCACCAGACGGC
. : . : . : . : . : . :
rJMSF021P18+ CTGTGTCTTGTTGATGTTGGGTATGGGGAGTTTGATCATAACAGCTGTCTGATCCCCTGA
rJMSF028E08+ CTGTGTCTTGTTGATGTTGGATATGGGGAGTTTGATCATAACAGCTGTCTGATCCCCTGA
rJMSF038H09+ CTGTGTCTTGTTGATGTTGGATATGGGGAGTTTGATCATAACAGCTGTCTGATCCCCTGA
____________________________________________________________
consensus CTGTGTCTTGTTGATGTTGGATATGGGGAGTTTGATCATAACAGCTGTCTGATCCCCTGA
. : . : . : . : . : . :
rJMSF021P18+ GATCATTGACACAAAGGATGAGGCAAAGAAGTAACAGCATCATATTGGAACAGAAATTGC
rJMSF028E08+ GATCATTGACACAAAGGATGAGGCAAAGAAGTAACAGCATCATATTGGAACAGAAATTGC
rJMSF038H09+ GATCATTGACACAAAGGATGAGGCAAAGAAGTAACAGCATCATATTGGAACAGAAATTGC
____________________________________________________________
consensus GATCATTGACACAAAGGATGAGGCAAAGAAGTAACAGCATCATATTGGAACAGAAATTGC
. : . : . : . : . : . :
rJMSF021P18+ AGTGTAATGGGAAGTGAGCAAAAGCAAAGAGAGTCCCATTCCAGTTGTGCTAGGATGATT
rJMSF028E08+ AGTGTAATGGGAAGTGAGCAAAAGCAAAGAGAGTCCCATTCCAGTTGTGCTAGGATGATT
rJMSF038H09+ AGTGTAATGGGAAGTGAGCAAAAGCAAAGAGAGTCCCATTCCAGTTGTGCTAGGATGATT
____________________________________________________________
consensus AGTGTAATGGGAAGTGAGCAAAAGCAAAGAGAGTCCCATTCCAGTTGTGCTAGGATGATT
. : . : . : . : . : . :
rJMSF021P18+ TGAACATTGGACCATTTTCATCACTGTCTCTCTTCCCTGTGCCGGTAAGCGGTAACATAG
rJMSF028E08+ TGAACATTGGACCATTTTCATCACTGTCTCTCTTCCCTGTGCCGGTAAGCGGTAACATAG
rJMSF038H09+ TGAACATTGGACCATTTTCATCACTGTCTCTCTTCCCTGTGCCGGTAAGCGGTAACATAG
____________________________________________________________
consensus TGAACATTGGACCATTTTCATCACTGTCTCTCTTCCCTGTGCCGGTAAGCGGTAACATAG
. : . : . : . : . : . :
rJMSF021P18+ GAGTTTTTCTTAGAATTTCTACAAATTGTTGTTGATTTATTGTTTCTAGTAACCATTAGT
rJMSF028E08+ GAGTTTTTCTTAGAATTTCTACAAATTGTTGTTGATTTATTGTTTCTAGTAACCATTAGT
rJMSF038H09+ GAGTTTTTCTTAGAATTTCTACAAATTGTTGTTGATTTATTGTTTCTAGTAACCATTAGT
____________________________________________________________
consensus GAGTTTTTCTTAGAATTTCTACAAATTGTTGTTGATTTATTGTTTCTAGTAACCATTAGT
. : . : . : . : . : . :
rJMSF021P18+ GGGGACTTGAAAGTTGGAAAGTTGTCTGAATTATTTTAGGAGTTGAGT
rJMSF028E08+ GGGGACTTGAAAGTTGGAAAGTTGTCTGAATTATTTTAGGAGTTGAGT
rJMSF038H09+ GGGGACTTGAAAGTTGGAAAGTTGTCTGAATTATTTTAGGAGTTGAGTTGGTTCTTGAAA
____________________________________________________________
consensus GGGGACTTGAAAGTTGGAAAGTTGTCTGAATTATTTTAGGAGTTGAGTTGGTTCTTGAAA