Contig 014045:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN013E05Sequence641014045 (2)ref|XP_009781716.1|3e-26PREDICTED: protein HIRA isoform X2 [Nicotiana sylvestris]
JMSF037D23Sequence677020057emb|CDO99350.1|9e-122unnamed protein product [Coffea canephora]554014045 (2)

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN013E05- TCGACTTCTAGTACAGAG
                      ____________________________________________________________
consensus TCGACTTCTAGTACAGAG
 
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JMFN013E05- AAACCTGCATGGGAACCTTGTGTCCTCGGTATGAAAAAGCACAAGCTCCTGAGAGAAGAT
                      ____________________________________________________________
consensus AAACCTGCATGGGAACCTTGTGTCCTCGGTATGAAAAAGCACAAGCTCCTGAGAGAAGAT
 
. : . : . : . : . : . :
JMFN013E05- ATACTTCCTGCAATGGCATCGAACCGAAAAGTGCAGCGGTTACTCAACGAGTTTATGGAA
                      ____________________________________________________________
consensus ATACTTCCTGCAATGGCATCGAACCGAAAAGTGCAGCGGTTACTCAACGAGTTTATGGAA
 
. : . : . : . : . : . :
JMFN013E05- CTTCTTTCGGAATATGATTTAAGTGAAACTAACCCCGGACAGAACACTGTTCCAACCGCA
                      ____________________________________________________________
consensus CTTCTTTCGGAATATGATTTAAGTGAAACTAACCCCGGACAGAACACTGTTCCAACCGCA
 
. : . : . : . : . : . :
JMFN013E05- GATAAAATGGATACTGATCTGCCCGGAGCAGAGAATAATAAACCTTCTTCCGCAGCAGTA
                      ____________________________________________________________
consensus GATAAAATGGATACTGATCTGCCCGGAGCAGAGAATAATAAACCTTCTTCCGCAGCAGTA
 
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JMFN013E05- ACCAATCAAGAGAACGCAGAAATCCCACCACCAGCAGCAGCAGCAGCAGATCAAATGGAT
                      ____________________________________________________________
consensus ACCAATCAAGAGAACGCAGAAATCCCACCACCAGCAGCAGCAGCAGCAGATCAAATGGAT
 
. : . : . : . : . : . :
JMFN013E05- ATAGCGTTGGAAACAGCCCATCCAGTGACAGAACCGGTGGACTCTGCAATCCAAGAAACC
rJMSF037D23+ CAATCCNAGAAACC
                      ____________________________________________________________
consensus ATAGCGTTGGAAACAGCCCATCCAGTGACAGAACCGGTGGACTCTGCAATCCAAGAAACC
 
. : . : . : . : . : . :
JMFN013E05- ACCAATGAAGAGGCGATACCCCAAAGCAACAAAATGAATTTGGACCCCCCGCCTCCATCT
rJMSF037D23+ NCCAATGAAGAGGCGATACCCCAAAGCAACAAAATGAATTTGGACCCCCCGCCTCCATCT
                      ____________________________________________________________
consensus ACCAATGAAGAGGCGATACCCCAAAGCAACAAAATGAATTTGGACCCCCCGCCTCCATCT
 
. : . : . : . : . : . :
JMFN013E05- GATCAACCGAATCCATGTCCACCCGCAGAGGAGGATAAAGGCTCCTGAGGATCCATCTCC
rJMSF037D23+ GATCAACCGAATCCATGTCCACCCGCAGAGGAGGATAAAGGCTCCTGAGGATCCATCTCC
                      ____________________________________________________________
consensus GATCAACCGAATCCATGTCCACCCGCAGAGGAGGATAAAGGCTCCTGAGGATCCATCTCC
 
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JMFN013E05- TTTCCTCATCTGACATGATACTCAATAACTAGCACTAACACAGTCGCTGACTCTCTGCTG
rJMSF037D23+ TTTCCTCATCTGACATGATACTCAATAACTAGCACTAACACAGTCGCTGACTCTCTGCTG
                      ____________________________________________________________
consensus TTTCCTCATCTGACATGATACTCAATAACTAGCACTAACACAGTCGCTGACTCTCTGCTG
 
. : . : . : . : . : . :
JMFN013E05- CTGATGCTACTACGGGCTTACCCCGACTCTCTCTGCCTCTGCAGCTAGCTGCTGGTTCAA
rJMSF037D23+ CTGATGCTACTACGGGCTTACCCCGACTCTCTCTGCCTNTGCAGCTAGCTGCTGGTTCAA
                      ____________________________________________________________
consensus CTGATGCTACTACGGGCTTACCCCGACTCTCTCTGCCTCTGCAGCTAGCTGCTGGTTCAA
 
. : . : . : . : . : . :
JMFN013E05- TCGAGATTCCTTGCACAGATGCT
rJMSF037D23+ TCGAGATTCCTTGCACAGATGCTGCTCCTCGCGTTCTATGAATTCTCGTGATTCAACGGA
                      ____________________________________________________________
consensus TCGAGATTCCTTGCACAGATGCTGCTCCTCGCGTTCTATGAATTCTCGTGATTCAACGGA
 
. : . : . : . : . : . :
rJMSF037D23+ ATGGGGTATGTAACAAAATCTCTCTCATTTGGAAGCNGTAATTTTTTTTATTTTTTTTTT
                      ____________________________________________________________
consensus ATGGGGTATGTAACAAAATCTCTCTCATTTGGAAGCNGTAATTTTTTTTATTTTTTTTTT
 
. : . : . : . : . : . :
rJMSF037D23+ CATTTTTTCTTAGTTTTGCCAGTTATAGTTTAACTCAAACCTAGCATCAGCGTACTTAAT
                      ____________________________________________________________
consensus CATTTTTTCTTAGTTTTGCCAGTTATAGTTTAACTCAAACCTAGCATCAGCGTACTTAAT
 
. : . : . : . : . : . :
rJMSF037D23+ TTGAGTGTACTTTGAAGATTATATTTACAATTAGCTGTAACTGTAGAGTAGTAAAAAAGG
                      ____________________________________________________________
consensus TTGAGTGTACTTTGAAGATTATATTTACAATTAGCTGTAACTGTAGAGTAGTAAAAAAGG
 
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rJMSF037D23+ GGTGTTTATCAGAGTTTGGTGTAAAGGGTTAATGTATGATCTTTTGCCCCTTCTGCTATC
                      ____________________________________________________________
consensus GGTGTTTATCAGAGTTTGGTGTAAAGGGTTAATGTATGATCTTTTGCCCCTTCTGCTATC