Contig 014036:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF016L24-                                                AAGACCAAAACTATACCAACAAG
JMSF035H12-                                               GAAGACCAAAACTATACCAACAAG
                      ____________________________________________________________
consensus                                                 GAAGACCAAAACTATACCAACAAG
 
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JMFF016L24-           AAACGGAGCTGTAGACCCGCAAGCAAAAGCAACGGACTTTAAAACCCTAAAAATTTGATC
JMSF035H12-           AAACGGAGCTGTAGACCCGCAAGCAAAAGCAACGGACTTTAAAACCCTAAAAATTTGATC
                      ____________________________________________________________
consensus             AAACGGAGCTGTAGACCCGCAAGCAAAAGCAACGGACTTTAAAACCCTAAAAATTTGATC
 
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JMFF016L24-           GCCACTCGCAAGACATTCTTTTCTTTTCTTCTCTCGCAAAACAACGAGAGAGAACTCTGC
JMSF035H12-           GCCACTCGCAAGACATTCTTTTCTTTTCTTCTCTCGCAAAACAACGAGAGAGAACTCTGC
                      ____________________________________________________________
consensus             GCCACTCGCAAGACATTCTTTTCTTTTCTTCTCTCGCAAAACAACGAGAGAGAACTCTGC
 
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JMFF016L24-           ATTCAATCGAATTGATCTGAAACCCAGATTGAAGGGGACGGCGGATTAATTTTTTT-AAA
JMSF035H12-           ATTTAATCGAATTGATCTGAAACCCAGATTGAAGGGGACGGCGGATTAATTTTTTTAAAA
                      ____________________________________________________________
consensus             ATTTAATCGAATTGATCTGAAACCCAGATTGAAGGGGACGGCGGATTAATTTTTTTAAAA
 
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JMFF016L24-           AAAAATTATACTTTTAAAATAATATAAACAGAACGGAAGAACATTGAAAATGTCGGCTGT
JMSF035H12-           AAAAATTATACTTTTAAAATAATATAAACAGAACGGAAGAACATTGAAAATGTCGGCTGT
                      ____________________________________________________________
consensus             AAAAATTATACTTTTAAAATAATATAAACAGAACGGAAGAACATTGAAAATGTCGGCTGT
 
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JMFF016L24-           AGTATGCGGCAAGAGATCATACTTTGATGAAATTCCGGCACCTAACTCAGGCTCAGCGTC
JMSF035H12-           AGTATGCGGCAAGAGATCATACTTTGATGAAATTCCGGCACCTAACTCAGGCTCAGCGTC
                      ____________________________________________________________
consensus             AGTATGCGGCAAGAGATCATACTTTGATGAAATTCCGGCACCTAACTCAGGCTCAGCGTC
 
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JMFF016L24-           GCCGCCGAGTGCAAAGAAGCTTCGTTGCTCGTCCTCCACCTCTCCGGTCCGGTTCCCGGT
JMSF035H12-           GCCGCCGAGTGCAAAGAAGCTTCGTTGCTCGTCCTCCACCTCTCCGGTCCGGTTCCCGGT
                      ____________________________________________________________
consensus             GCCGCCGAGTGCAAAGAAGCTTCGTTGCTCGTCCTCCACCTCTCCGGTCCGGTTCCCGGT
 
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JMFF016L24-           TTCTCCGCCGCCGCCGTCGCAGAGCCTCATTGATCAGCTGAGAGCCCAGTTTCCTGATTT
JMSF035H12-           TTCTCCGCCGCCGCCGTCGCAGAGCCTCATTGATCAGCTGAGAGCCCAGTTTCCTGATTT
                      ____________________________________________________________
consensus             TTCTCCGCCGCCGCCGTCGCAGAGCCTCATTGATCAGCTGAGAGCCCAGTTTCCTGATTT
 
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JMFF016L24-           CGACACTCAGCTTCTTGAGAAGGCTTTAGAAGAATGTGGCTACAACTTGGATGCTGCTAA
JMSF035H12-           CGACACTCAGCTTCTTGAGAAGGCTTTAGAAGAATGTGGCTACAACTTGGATGCTGCTAA
rJMFF016L24+           GACACTCAGCTTCTTGAGAAGGCTTTAGAAGAATGTGGCTACAACTTGGATGCTGCTAA
rJMSF035H12+                                                  TACAACTTGGATGCTGCTAA
                      ____________________________________________________________
consensus             CGACACTCAGCTTCTTGAGAAGGCTTTAGAAGAATGTGGCTACAACTTGGATGCTGCTAA
 
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JMFF016L24-           CAAATGCTTGAATGAGAT                                          
JMSF035H12-           CAAATGCTTGAATGAGATGCGGCAGGGGAAGTCCTGTGGTAATGTTGAAGTAAATGCAAA
rJMFF016L24+          CAAATGCTTGAATGAGATGCGGCAGGGGAAGTCCTGTGGTAATGTTGAAGTAAATGCAAA
rJMSF035H12+          CAAATGCTTGAATGAGATGCGGCAGGGGAAGTCCTGTGGTAATGTTGAAGTAAATGCAAA
                      ____________________________________________________________
consensus             CAAATGCTTGAATGAGATGCGGCAGGGGAAGTCCTGTGGTAATGTTGAAGTAAATGCAAA
 
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JMSF035H12-           TATGCAGAGTGGTGCATGGCCAACTAATGGAGTGGCAATGCCTACTGAAGATCATACCGT
rJMFF016L24+          TATGCAGAGTGGTGCATGGCCAACTAATGGAGTGGCAATGCCTACTGAAGATCATACCGT
rJMSF035H12+          TATGCAGAGTGGTGCATGGCCAACTAATGGAGTGGCAATGCCTACTGAAGATCATACCGT
                      ____________________________________________________________
consensus             TATGCAGAGTGGTGCATGGCCAACTAATGGAGTGGCAATGCCTACTGAAGATCATACCGT
 
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JMSF035H12-           CCAAGGTAACATTCCAATTGACGGTGTTCATTGGGTTGATTTGTTTGT            
rJMFF016L24+          CCAAGGTAACATTCCAATTGACGGTGTTCATTGGGTTGATTTGTTTGTGAGGGAGATGAT
rJMSF035H12+          CCAAGGTAACATTCCAATTGACGGTGTTCATTGGGTTGATTTGTTTGTGAGGGAGATGAT
                      ____________________________________________________________
consensus             CCAAGGTAACATTCCAATTGACGGTGTTCATTGGGTTGATTTGTTTGTGAGGGAGATGAT
 
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rJMFF016L24+          GAGTGCTACTAGCATTGATGATGCTAGAGCTCGTGCTTCTAGATTATTGGCAGCTTTGGA
rJMSF035H12+          GAGTGCTACTAGCATTGATGATGCTAGAGCTCGTGCTTCTAGATTATTGGCAGCTTTGGA
                      ____________________________________________________________
consensus             GAGTGCTACTAGCATTGATGATGCTAGAGCTCGTGCTTCTAGATTATTGGCAGCTTTGGA
 
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rJMFF016L24+          GAAAGCCATTTGTGTGCAAACAGGTGCAGAAGCAGCTCAAAAGATTCAGAAGGAAAATAT
rJMSF035H12+          GAAAGCCATTTGTGTGCAAACAGGTGCAGAAGCAGCTCAAAAGATTCAGAAGGAAAATAT
                      ____________________________________________________________
consensus             GAAAGCCATTTGTGTGCAAACAGGTGCAGAAGCAGCTCAAAAGATTCAGAAGGAAAATAT
 
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rJMFF016L24+          GATGCTGAAGGAGCAAGCTGAAGGGCTTCTCAGAGAAAATGGCATTCTGAAACGTGCTGT
rJMSF035H12+          GATGCTGAAGGAGCAAGCTGAAGGGCTTCTCAGAGAAAATGGCATTCTGAAACGTGCTGT
                      ____________________________________________________________
consensus             GATGCTGAAGGAGCAAGCTGAAGGGCTTCTCAGAGAAAATGGCATTCTGAAACGTGCTGT
 
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rJMFF016L24+          GGCCATCCAACATGAGCGCCAGAAGGAGCTTGACGATAAAAACCAAGAGGTGCAGCAATT
rJMSF035H12+          GGCCATCCAACATGAGCGCCAGAAGGAGCTTGACGATAAAAACCAAGAGGTGCAGCAATT
                      ____________________________________________________________
consensus             GGCCATCCAACATGAGCGCCAGAAGGAGCTTGACGATAAAAACCAAGAGGTGCAGCAATT
 
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rJMFF016L24+          AAAGCAGCTGGTTACTCAATATCAGGAGCAACTGAGAACTCTACAGGTGAACAATTATGC
rJMSF035H12+          AAAGCAGCTGGTTACTCAATATCAGGAGCAACTGAGAACTCTACAGGTGAACAATTATGC
                      ____________________________________________________________
consensus             AAAGCAGCTGGTTACTCAATATCAGGAGCAACTGAGAACTCTACAGGTGAACAATTATGC
 
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rJMFF016L24+          GCTGAAACTGCATTTGCAGCAGGCTCAGCAGTCCAACTCGATGCCTGGACATTTCCATCC
rJMSF035H12+          GCTGAAACTGCATTTGCAGCAGGCTCAGCAGTCCAACTCGATGCCTGGACATTTCCATCC
                      ____________________________________________________________
consensus             GCTGAAACTGCATTTGCAGCAGGCTCAGCAGTCCAACTCGATGCCTGGACATTTCCATCC
 
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rJMFF016L24+          AGATATCTTCTAATAAACATAAGAAAATTTAAACTAGTCATATATGCTTGCTGGCTTCTT
rJMSF035H12+          AGATATCTTCTAATAAACATAAGAAAATTTAAACTAGTCATATATGCTTGCTGGCTTCTT
                      ____________________________________________________________
consensus             AGATATCTTCTAATAAACATAAGAAAATTTAAACTAGTCATATATGCTTGCTGGCTTCTT
 
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rJMFF016L24+          TTAGATCTCATGTAGGGTGTTTGAAAGCATCTTGTAAATGATGATCACCAAATAGGGAAC
rJMSF035H12+          TTAGATCTCATGTAGGGTGTTTGAAAGCATCTTGTAAATGATGATCACCAAATAGGGAAC
                      ____________________________________________________________
consensus             TTAGATCTCATGTAGGGTGTTTGAAAGCATCTTGTAAATGATGATCACCAAATAGGGAAC
 
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rJMFF016L24+          AGGAACAGGAACTTAGTTGTTTCAAATGCTTGAAGATTTTAAGTTGTACTGGAT      
rJMSF035H12+          AGGAACAGGAACTTAGTTGTTTCAAATGCTTGAAGATTTTAAGTTGTACTGGATTTGATT
                      ____________________________________________________________
consensus             AGGAACAGGAACTTAGTTGTTTCAAATGCTTGAAGATTTTAAGTTGTACTGGATTTGATT