Contig 014028:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF033J18Sequence610023232ref|XP_009617989.1|6e-32PREDICTED: probable WRKY transcription factor 40 [Nicotiana tomentosiformis]723014028 (2)dbj|BAA87058.1|2e-36WIZZ [Nicotiana tabacum]
JMSF034J18Sequence669021116ref|WP_034125498.1|3e-152molecular chaperone Hsp33 [Pseudomonas fluorescens]464014028 (2)emb|CDO98227.1|1e-09unnamed protein product [Coffea canephora]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033J18+                                                                  TCCT
                      ____________________________________________________________
consensus                                                                     TCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033J18+          AGCTGCCCAGTCAAGAAGAAGGTGCAAAGAAGCGTAGAAGATCAGTCAATCTTGGTGGCA
                      ____________________________________________________________
consensus             AGCTGCCCAGTCAAGAAGAAGGTGCAAAGAAGCGTAGAAGATCAGTCAATCTTGGTGGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033J18+          ACATATGAAGGAGAGCACAACCATGACCTCCCTTCAAAGCTAGAACAATCCCCCACCACT
                      ____________________________________________________________
consensus             ACATATGAAGGAGAGCACAACCATGACCTCCCTTCAAAGCTAGAACAATCCCCCACCACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033J18+          GCCACCGCAGCCGGCCGTTCTTTGCCGCCAGTCATCAATGGTGGCTCCGCCACAGCAGCT
                      ____________________________________________________________
consensus             GCCACCGCAGCCGGCCGTTCTTTGCCGCCAGTCATCAATGGTGGCTCCGCCACAGCAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034J18+                                        ACGCCGCCCAAAACAGCACCGTNTTCAGTG
rJMSF033J18+          GCCTCCCTCAACACCCAACCACGTGACCTAACGCCGCCCAAAACAGCACCGTCTTCAGTG
                      ____________________________________________________________
consensus             GCCTCCCTCAACACCCAACCACGTGACCTAACGCCGCCCAAAACAGCACCGTCTTCAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034J18+          GCCAATGCCAATGGTGGNTAAAACCGCCTCTACCCCGACGGCCGGAAGCTCANTACTGCC
rJMSF033J18+          GCCAATGCCAATGGT-GCTAAAACCGCCTCTACCCCGACGGCCGGAAGCTCATTACTGCC
                      ____________________________________________________________
consensus             GCCAATGCCAATGGTGGCTAAAACCGCCTCTACCCCGACGGCCGGAAGCTCATTACTGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034J18+          GGTTGACAGGCCGGATTTTCAACAGNTCTTTNTTGAACAAATGGCATCTTCNTTAACAAA
rJMSF033J18+          GGTTGACAGGCCGGATTTTCAACAGTTCTTTATTGAACAAATGGCATCTTCCTTAACAAA
                      ____________________________________________________________
consensus             GGTTGACAGGCCGGATTTTCAACAGTTCTTTATTGAACAAATGGCATCTTCCTTAACAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034J18+          AGATNCCACCTTCAGAGCAGCCATCGCAGCCGCCATTTCAGGAAAATTCCCCTCACATNN
rJMSF033J18+          AGATCCCACCTTCAAAGCAGCCATCGCAGCCGCCATTTCAGGAAAATTCCCCTCACATAA
                      ____________________________________________________________
consensus             AGATCCCACCTTCAGAGCAGCCATCGCAGCCGCCATTTCAGGAAAATTCCCCTCACATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034J18+          CAACAGAGAGAAATGGTAAAATATTAAAGCTTGTTTACTTGTTTGGTCCGTTCATAACNG
rJMSF033J18+          CAACAGAGAGAAATGGTAAAATATTAAAGCTTGTTTACTTGTTTGGTCCGTTCATAACAC
                      ____________________________________________________________
consensus             CAACAGAGAGAAATGGTAAAATATTAAAGCTTGTTTACTTGTTTGGTCCGTTCATAACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034J18+          GATGTCAAGAAAATACCATAAGTTTGTTCACTAAAAGTGACCAAAATTTGATATTTTATA
rJMSF033J18+          GATGTCAAGAAAATACCATAAGTTTGTTCACTAAAAGTGACCAAAATTTGATATTTTATA
                      ____________________________________________________________
consensus             GATGTCAAGAAAATACCATAAGTTTGTTCACTAAAAGTGACCAAAATTTGATATTTTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034J18+          TGACATGGTGTTANTAATTCAGTACACATCTTTGAGTAATGGTCGCGGTAGTTNCCCTGT
rJMSF033J18+          TGACATGGTGTTATTAATTCAGTACACATCTTTGAGTAATGGTCGCGGTAGTTACCCTGT
                      ____________________________________________________________
consensus             TGACATGGTGTTATTAATTCAGTACACATCTTTGAGTAATGGTCGCGGTAGTTACCCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034J18+          TTGTAGTTTGGATAAGCGGAATTTGTAAATACCAATATTCAAAAGGGGGTCCACAATGGC
rJMSF033J18+          TTGTAGTTTGGATAAGCGGAATTTGTAAATACCAATATTCAAAAGGGGGTCCACAATGGC
                      ____________________________________________________________
consensus             TTGTAGTTTGGATAAGCGGAATTTGTAAATACCAATATTCAAAAGGGGGTCCACAATGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034J18+          GCTGANCCCGGTCC                                              
rJMSF033J18+          GCTGAACCCGGTCCATGGGCCACTCTAGAGTTCGAAAGTTCAAGAGCTGAATGCTCCTTT
                      ____________________________________________________________
consensus             GCTGAACCCGGTCCATGGGCCACTCTAGAGTTCGAAAGTTCAAGAGCTGAATGCTCCTTT