Contig 014013:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF030L16Sequence675014013 (2)ref|XP_011008851.1|4e-52PREDICTED: probable receptor-like protein kinase At1g49730 isoform X2 [Populus 691014013 (2)ref|XP_009789004.1|1e-97PREDICTED: probable receptor-like protein kinase At1g49730 [Nicotiana sylvestri

Alignment

This contig is upended


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JMSF030L16- GGGCACACAGGTCATTTTCTTCACCCTCTTCCTCCTT
                      ____________________________________________________________
consensus GGGCACACAGGTCATTTTCTTCACCCTCTTCCTCCTT
 
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JMSF030L16- CTTTCTTCTTCTTCACTTCTTCTTGCAGATCTTTCCATGGACCCTTTGACTCTCAAGATC
                      ____________________________________________________________
consensus CTTTCTTCTTCTTCACTTCTTCTTGCAGATCTTTCCATGGACCCTTTGACTCTCAAGATC
 
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JMSF030L16- AGGCTCTTCTTCCTCCACTGGATTCACTGCAGATCTCACCCCAGTTCAGTGTCCTTAGTC
                      ____________________________________________________________
consensus AGGCTCTTCTTCCTCCACTGGATTCACTGCAGATCTCACCCCAGTTCAGTGTCCTTAGTC
 
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JMSF030L16- AAGCACTTTTCATACAAGGATATAAAGAGAGGCACTGATGGATTTAGAAGAATCCTTGAT
                      ____________________________________________________________
consensus AAGCACTTTTCATACAAGGATATAAAGAGAGGCACTGATGGATTTAGAAGAATCCTTGAT
 
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JMSF030L16- ACCTCTTCCAATGGGGGGATGGCATATAGAGCTAGGTTTCAGAATGGCCAGGTTGCTTTT
                      ____________________________________________________________
consensus ACCTCTTCCAATGGGGGGATGGCATATAGAGCTAGGTTTCAGAATGGCCAGGTTGCTTTT
 
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JMSF030L16- GTTAAAGAAATCAAAATTCTTGATGATCAAGACGACGATGTCTTCTTTGGCGAAGTGCGG
                      ____________________________________________________________
consensus GTTAAAGAAATCAAAATTCTTGATGATCAAGACGACGATGTCTTCTTTGGCGAAGTGCGG
 
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JMSF030L16- CTCCTTGCGCGTTTGCATCATCGCCACATTGTTGCTCTTAGGGGTTTCTCGAGTGGACCT
                      ____________________________________________________________
consensus CTCCTTGCGCGTTTGCATCATCGCCACATTGTTGCTCTTAGGGGTTTCTCGAGTGGACCT
 
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JMSF030L16- AAGAGATGTGTAGTGTCTTTTTTCAGATTGGAGTACTCTTCAATCCATTTCTCAGGTTTC
rJMSF030L16+ GGAGTACTCTTCAATCCATTTCTCAGGTTTC
                      ____________________________________________________________
consensus AAGAGATGTGTAGTGTCTTTTTTCAGATTGGAGTACTCTTCAATCCATTTCTCAGGTTTC
 
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JMSF030L16- TGGTGTTTGAAAGTACGGAGAATGGGAGTCTGAAGGATCACCTGTCCGACCCTTTGAAGA
rJMSF030L16+ TGGTGTTTGAAAGTACGGAGAATGGGAGTCTGAAGGATCACCTGTCCGACCCTTTGAAGA
                      ____________________________________________________________
consensus TGGTGTTTGAAAGTACGGAGAATGGGAGTCTGAAGGATCACCTGTCCGACCCTTTGAAGA
 
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JMSF030L16- CTCCATTAAACTGGAGAACAAGGTTGCAGATAGCCATTGGCATAGCTGCTGCTTTGGAAT
rJMSF030L16+ CTCCATTAAACTGGAGAACAAGGTTGCAGATAGCCATTGGCATAGCTGCTGCTTTGGAAT
                      ____________________________________________________________
consensus CTCCATTAAACTGGAGAACAAGGTTGCAGATAGCCATTGGCATAGCTGCTGCTTTGGAAT
 
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JMSF030L16- ACTTGCATTTCTTCTGTGATCCCCCGCTCTACCTCGCTACCATCAGTTCAAGTACCATTA
rJMSF030L16+ ACTTGCATTTCTTCTGTGATCCCCCGCTCTACCTCGCTACCATCAGTTCAAGTACCATTA
                      ____________________________________________________________
consensus ACTTGCATTTCTTCTGTGATCCCCCGCTCTACCTCGCTACCATCAGTTCAAGTACCATTA
 
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JMSF030L16- TGTTGGACGAGAACTTCACTGCAAANCTTGCTGATATC
rJMSF030L16+ TGTTGGACGAGAACTTCACTGCAAAACTTGCTGATATCAGCCTCCTTTGTTCTGTTGGAA
                      ____________________________________________________________
consensus TGTTGGACGAGAACTTCACTGCAAAACTTGCTGATATCAGCCTCCTTTGTTCTGTTGGAA
 
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rJMSF030L16+ GTGACACAATGCTGCCAGAATCATCATGCTCAAAAGTATGCAGGGGTGAGAGATGCAAGA
                      ____________________________________________________________
consensus GTGACACAATGCTGCCAGAATCATCATGCTCAAAAGTATGCAGGGGTGAGAGATGCAAGA
 
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rJMSF030L16+ ACTTGGTTTTCCAGCTGGGAGTGCTGATCCTGGAGCTAATCACTGGGCAATCTGCAGAAG
                      ____________________________________________________________
consensus ACTTGGTTTTCCAGCTGGGAGTGCTGATCCTGGAGCTAATCACTGGGCAATCTGCAGAAG
 
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rJMSF030L16+ ATGGGGGTGGTGATTTAGTGAAGTGGGTACAAGAATCTCGATTCAGAACATCGATATACA
                      ____________________________________________________________
consensus ATGGGGGTGGTGATTTAGTGAAGTGGGTACAAGAATCTCGATTCAGAACATCGATATACA
 
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rJMSF030L16+ AAATGTTGGATCCTGATCTTGGAGACGAGTATGATTCCCAGGAGCTTAAAGGTCTTCTAA
                      ____________________________________________________________
consensus AAATGTTGGATCCTGATCTTGGAGACGAGTATGATTCCCAGGAGCTTAAAGGTCTTCTAA
 
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rJMSF030L16+ CAGTGGCAAGATTGTGTATAAAATCTGCTAACAAGCCAGCAGTAAAGACATCCCAGATTT
                      ____________________________________________________________
consensus CAGTGGCAAGATTGTGTATAAAATCTGCTAACAAGCCAGCAGTAAAGACATCCCAGATTT
 
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rJMSF030L16+ TATGGTACCTCCAAAACAAAATAAGGATCACCCAAGATGTTGTTCAATAGTGTTGTCTCA
                      ____________________________________________________________
consensus TATGGTACCTCCAAAACAAAATAAGGATCACCCAAGATGTTGTTCAATAGTGTTGTCTCA
 
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rJMSF030L16+ TAGTCATATGATAAATACAAAAGTACCATGGTTTTTGGTTTGATCAAGAAACTAGCTGTT
                      ____________________________________________________________
consensus TAGTCATATGATAAATACAAAAGTACCATGGTTTTTGGTTTGATCAAGAAACTAGCTGTT