Contig 014011:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF030J12Sequence679014011 (2)emb|CDP00243.1|1e-71unnamed protein product [Coffea canephora]776014011 (2)emb|CDP00243.1|2e-71unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF030J12-                                               GGGGGATCCATTCACCATCCCCGC
                      ____________________________________________________________
consensus                                                 GGGGGATCCATTCACCATCCCCGC
 
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JMSF030J12-           TACCGGCAGACAGAAGTGACAGTCGCGGTAGACGTTCGTCGGAGAAAAGCAAATCACATG
rJMSF030J12+              GGCAGACAGAAGTGACAGTCGCGGTAGACGTTCGTCGGAGNAAAGCAAATCACATG
                      ____________________________________________________________
consensus             TACCGGCAGACAGAAGTGACAGTCGCGGTAGACGTTCGTCGGAGAAAAGCAAATCACATG
 
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JMSF030J12-           AAGTTTTCCGGCACGTCGGCGATTCTTCTCTATTTTATTGTTATCTCCGTATTTTCAGCT
rJMSF030J12+          AAGTTTTCCGGCACGTCGGCGATTCTTCTCTATTTTATTGTTATCTCCGTATTTTCAGCT
                      ____________________________________________________________
consensus             AAGTTTTCCGGCACGTCGGCGATTCTTCTCTATTTTATTGTTATCTCCGTATTTTCAGCT
 
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JMSF030J12-           CCCTCTCTCGTGGAAAGCTCTGGAGGAGGAGATGCGCGCCGAATGATGATGAGCTTCAAG
rJMSF030J12+          CCCTCTCTCGTGGAAAGCTCTGGAGGAGGAGATGCGCGCCGAATGATGATGAGCTTCAAG
                      ____________________________________________________________
consensus             CCCTCTCTCGTGGAAAGCTCTGGAGGAGGAGATGCGCGCCGAATGATGATGAGCTTCAAG
 
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JMSF030J12-           GAGACCCCTAATGGAGGAAACGTCACCTTCGACTGCTCTCCTTCTGGTCCCTGCGTTCCC
rJMSF030J12+          GAGACCCCTAATGGAGGAAACGTCACCTTCGACTGCTCTCCTTCTGGTCCCTGCGTTCCC
                      ____________________________________________________________
consensus             GAGACCCCTAATGGAGGAAACGTCACCTTCGACTGCTCTCCTTCTGGTCCCTGCGTTCCC
 
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JMSF030J12-           TGTGCCTACTCCGAAAAGAGTGATGAAAAGTATCGATGTAGCGAAACCGGATATCGCATT
rJMSF030J12+          TGTGCCTACTCCGAAAAGAGTGATGAAAAGTATCGATGTAGCGAAACCGGATATCGCATT
                      ____________________________________________________________
consensus             TGTGCCTACTCCGAAAAGAGTGATGAAAAGTATCGATGTAGCGAAACCGGATATCGCATT
 
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JMSF030J12-           CCTTTCAAATGTGAAGAAATTAAAGACGGTTCTAAGGACGCAAAGAGCAAGAAAATGCAA
rJMSF030J12+          CCTTTCAAATGTGAAGAAATTAAAGACGGTTCTAAGGACGCAAAGAGCAAGAAAATGCAA
                      ____________________________________________________________
consensus             CCTTTCAAATGTGAAGAAATTAAAGACGGTTCTAAGGACGCAAAGAGCAAGAAAATGCAA
 
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JMSF030J12-           AAGAGTCGATCTACATTAGAAACTCACAGTTATACAATAAGGGAAAGAAGTTTGTTGGAA
rJMSF030J12+          AAGAGTCGATCTACATTAGAAACTCACAGTTATACAATAAGGGAAAGAAGTTTGTTGGAA
                      ____________________________________________________________
consensus             AAGAGTCGATCTACATTAGAAACTCACAGTTATACAATAAGGGAAAGAAGTTTGTTGGAA
 
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JMSF030J12-           GATTCATCCACTTCCGATAGTGGTTTGCAGGCTTACATAACTTACAGGAGCTGTATTACA
rJMSF030J12+          GATTCATCCACTTCCGATAGTGGTTTGCAGGCTTACATAACTTACAGGAGCTGTATTACA
                      ____________________________________________________________
consensus             GATTCATCCACTTCCGATAGTGGTTTGCAGGCTTACATAACTTACAGGAGCTGTATTACA
 
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JMSF030J12-           CCAGTTAGTGAAGAGAGGGTGTCAGTACTTGGTTTTGAGGGAATAATGATGGGCTTGCTG
rJMSF030J12+          CCAGTTAGTGAAGAGAGGGTGTCAGTACTTGGTTTTGAGGGAATAATGATGGGCTTGCTG
                      ____________________________________________________________
consensus             CCAGTTAGTGAAGAGAGGGTGTCAGTACTTGGTTTTGAGGGAATAATGATGGGCTTGCTG
 
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JMSF030J12-           ATGATTAGTGGTTCGGCTATATATTACAAAAGAAAGCGAGCCAATGCAGTTCCTGGTGGT
rJMSF030J12+          ATGATTAGTGGTTCGGCTATATATTACAAAAGAAAGCGAGCCAATGCAGTTCCTGGTGGT
                      ____________________________________________________________
consensus             ATGATTAGTGGTTCGGCTATATATTACAAAAGAAAGCGAGCCAATGCAGTTCCTGGTGGT
 
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JMSF030J12-           GCACCTGTAAGGGTTCCTAACAGTTCTCGATTTTGAATCAAACGTCTTCATTGAT     
rJMSF030J12+          GCACCTGTAAGGGTTCCTAACAGTTCTCGATTTTGAATCAAACGTCTTCATTGATTTAAG
                      ____________________________________________________________
consensus             GCACCTGTAAGGGTTCCTAACAGTTCTCGATTTTGAATCAAACGTCTTCATTGATTTAAG
 
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rJMSF030J12+          GTTAGGAATTCTTTAGCTCATGGAATGGTTTGAACTTGTAAAGAAGGTTGTCTTAGTGAT
                      ____________________________________________________________
consensus             GTTAGGAATTCTTTAGCTCATGGAATGGTTTGAACTTGTAAAGAAGGTTGTCTTAGTGAT
 
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rJMSF030J12+          GTTGTAATTTTGATACTTATGAACCACAAACAGAAGCCTCTTTTCTGAATGTATCAAATT
                      ____________________________________________________________
consensus             GTTGTAATTTTGATACTTATGAACCACAAACAGAAGCCTCTTTTCTGAATGTATCAAATT