Contig 013961:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021B13Sequence691002210 (3)ref|XP_007047612.1|1e-75Squalene monooxygenase isoform 3 [Theobroma cacao] gb|EOX91769.1| Squalene monoo781013961 (2)ref|XP_009624091.1|5e-104PREDICTED: squalene epoxidase 3-like [Nicotiana tomentosiformis]
JMSF029B21Sequence562002210 (3)ref|XP_007047613.1|4e-47Squalene monooxygenase isoform 4 [Theobroma cacao] gb|EOX91770.1| Squalene monoo650013961 (2)emb|CAN60406.1|1e-80hypothetical protein VITISV_034139 [Vitis vinifera]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF021B13+ C
                      ____________________________________________________________
consensus C
 
. : . : . : . : . : . :
rJMSF021B13+ GTTTACTGGGCGATGCTTTCAACATGCGCCATCCTTAACGGGTGGAGGAATGACTGTAGC
                      ____________________________________________________________
consensus GTTTACTGGGCGATGCTTTCAACATGCGCCATCCTTAACGGGTGGAGGAATGACTGTAGC
 
. : . : . : . : . : . :
rJMSF029B21+ TGCAGAACCTGAATGATGC
rJMSF021B13+ GCTCTCGGACATTGTAGTGCTAAGGGACCTTCTTAGGCCGTTGCAGAACCTGAATGATGC
                      ____________________________________________________________
consensus GCTCTCGGACATTGTAGTGCTAAGGGACCTTCTTAGGCCGTTGCAGAACCTGAATGATGC
 
. : . : . : . : . : . :
rJMSF029B21+ CGATGCATNGTGCAGATACC-TGAGTCGTTTTATACCTTGCGTAAGCCAGTGGCATCTAC
rJMSF021B13+ CGATGCATTGTGCAGATACCTTGAGTCGTTTTATACCTTGCGTAAGCCAGTGGCATCTAC
                      ____________________________________________________________
consensus CGATGCATTGTGCAGATACCTTGAGTCGTTTTATACCTTGCGTAAGCCAGTGGCATCTAC
 
. : . : . : . : . : . :
rJMSF029B21+ AATCAATACTTTGGCTGGAGCCCTGTACAAAGTGTTCTGTGCTTCTCCTGACCAAGCGAG
rJMSF021B13+ AATCAATACTTTGGCTGGAGCCCTGTACAAAGTGTTCTGTGCTTCTCCTGACCAAGCGAG
                      ____________________________________________________________
consensus AATCAATACTTTGGCTGGAGCCCTGTACAAAGTGTTCTGTGCTTCTCCTGACCAAGCGAG
 
. : . : . : . : . : . :
rJMSF029B21+ GAAGGAAATGCGGCAAGCATGTTTCGACTATTTGAGCCTCGGAGGTACTTGCTCAACGGG
rJMSF021B13+ GAAGGAAATGCGGCAAGCATGTTTCGACTATTTGAGCCTCGGAGGTACTTGCTCAACGGG
                      ____________________________________________________________
consensus GAAGGAAATGCGGCAAGCATGTTTCGACTATTTGAGCCTCGGAGGTACTTGCTCAACGGG
 
. : . : . : . : . : . :
rJMSF029B21+ ACCTGTGGCTCTGCTATCTGGGCTTAACCCGCGCCCATTGAGCTTAGTCATGCACTTCTT
rJMSF021B13+ ACCTGTGGCTCTGCTATCTGGGCTTAACCCGCGCCCATTGAGCTTAGTCATGCACTTCTT
                      ____________________________________________________________
consensus ACCTGTGGCTCTGCTATCTGGGCTTAACCCGCGCCCATTGAGCTTAGTCATGCACTTCTT
 
. : . : . : . : . : . :
rJMSF029B21+ CGCGGTGGCCATATATGGAGTTGGTCGTCTGCTAATACCGTTTCCTTCTCCCAAGCGATT
rJMSF021B13+ CGCGGTGGCCATATATGGAGTTGGTCGTCTGCTAATACCGTTTCCTTCTCCCAAGCGATT
                      ____________________________________________________________
consensus CGCGGTGGCCATATATGGAGTTGGTCGTCTGCTAATACCGTTTCCTTCTCCCAAGCGATT
 
. : . : . : . : . : . :
rJMSF029B21+ ATGGATTGGAGCTAGATTAATCTCGGCTGCATCTGGGATCATATTTCCCATCATAAAGGC
rJMSF021B13+ ATGGATTGGAGCTAGATTAATCTCGGCTGCATCTGGGATCATATTTCCCATCATAAAGGC
                      ____________________________________________________________
consensus ATGGATTGGAGCTAGATTAATCTCGGCTGCATCTGGGATCATATTTCCCATCATAAAGGC
 
. : . : . : . : . : . :
rJMSF029B21+ AGAAGGGGTGAGGCAAATGTTCTTTCCTGCAACAGTACCAGCTTATTTTAGAGCTCCTCG
rJMSF021B13+ AGAAGGGGTGAGGCAAATGTTCTTTCCTGCAACAGTACCAGCTTATTTTAGAGCTCCTCG
                      ____________________________________________________________
consensus AGAAGGGGTGAGGCAAATGTTCTTTCCTGCAACAGTACCAGCTTATTTTAGAGCTCCTCG
 
. : . : . : . : . : . :
rJMSF029B21+ TGTTTAACTAAATCCTCATTTAGCTATGGCTGATCAAGAATCTTGAACTGGAAAAACCAA
rJMSF021B13+ TGTTTAACTAAATCCTCATTTAGCTATGGCTGATCAAGAATCTTGAACTGGAAAAACCAA
                      ____________________________________________________________
consensus TGTTTAACTAAATCCTCATTTAGCTATGGCTGATCAAGAATCTTGAACTGGAAAAACCAA
 
. : . : . : . : . : . :
rJMSF029B21+ ACCATCTGGGATCATCATAATCCATTCTTTCTGTTCGGTCTTCCCTTGCTCAAAACAAGA
rJMSF021B13+ ACCATCTGGGATCATCATAATCCATTCTTTCTGTTCGGTCTTCCCTTGCTCAAAACAAGA
                      ____________________________________________________________
consensus ACCATCTGGGATCATCATAATCCATTCTTTCTGTTCGGTCTTCCCTTGCTCAAAACAAGA
 
. : . : . : . : . : . :
rJMSF029B21+ TATGTGTACATGTTCAACCATTTCGGAGGAGTTAACTAGCGAGGTAGGGAATGTAAAATT
rJMSF021B13+ TATGTGTACATGTTCAACCATTTCGGAGGAGTTAACTAGCGAGGTAGGGAATGTAAAATT
                      ____________________________________________________________
consensus TATGTGTACATGTTCAACCATTTCGGAGGAGTTAACTAGCGAGGTAGGGAATGTAAAATT
 
. : . : . : . : . : . :
rJMSF029B21+ CATTGTGCATGATTAACAAACTNCAAAC
rJMSF021B13+ CATTGTGCATGATTAACAAACTTCAAACTGTAGAAAAGAGACCATCAAGCTTAACCATGT
                      ____________________________________________________________
consensus CATTGTGCATGATTAACAAACTTCAAACTGTAGAAAAGAGACCATCAAGCTTAACCATGT