Contig 013960:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039O04Sequence524009300 (2)755013960 (2)ref|XP_006452980.1|1e-86hypothetical protein CICLE_v10008663mg [Citrus clementina] gb|ESR66220.1| hypoth
JMSF020O05Sequence656009300 (2)684013960 (2)gb|KDO73649.1|2e-66hypothetical protein CISIN_1g0161871mg, partial [Citrus sinensis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O04+             TCTAGATTGACCAATGATTNGTTAGCTGATTGGTAATTATAACAAATCTTTACCATT
                      ____________________________________________________________
consensus                TCTAGATTGACCAATGATTNGTTAGCTGATTGGTAATTATAACAAATCTTTACCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O04+          CTAGGTCATCCATATCACACAGAGGGGCTGACATGTTTGGCAATCAACAAAGATTCAACA
                      ____________________________________________________________
consensus             CTAGGTCATCCATATCACACAGAGGGGCTGACATGTTTGGCAATCAACAAAGATTCAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O04+          CTTGTTCTCACGGGTTCAAAAGACAGCTCTGCTCACCTTGTGAACATTGAGACGGGGAAG
rJMSF020O05+                                              CTTGTGAACATTGAGACGGGGAAG
                      ____________________________________________________________
consensus             CTTGTTCTCACGGGTTCAAAAGACAGCTCTGCTCACCTTGTGAACATTGAGACGGGGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O04+          GTTGTCAGCTCTTTGAATGGTCATTCAGATTCAATTGAATGTATTGGATTTTCAGCAAGC
rJMSF020O05+          GTTGTCAGCTCTTTGAATGGTCATTCAGATTCAATTGAATGTATTGGATTTTCAGCAAGC
                      ____________________________________________________________
consensus             GTTGTCAGCTCTTTGAATGGTCATTCAGATTCAATTGAATGTATTGGATTTTCAGCAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O04+          TCTCCTTGGGCTGCAACTGGAAGCATGGATCGGAAGCTCATTATTTGGGATGTACAACAT
rJMSF020O05+          TCTCCTTGGGCTGCAACTGGAAGCATGGATCGGAAGCTCATTATTTGGGATGTACAACAT
                      ____________________________________________________________
consensus             TCTCCTTGGGCTGCAACTGGAAGCATGGATCGGAAGCTCATTATTTGGGATGTACAACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O04+          TCATTGCCTCGATGCACATGTGAACATGAGGAAGGAGTGACATGCTTGTTGTGGTTAGGC
rJMSF020O05+          TCATTGCCTCGATGCACATGTGAACATGAGGAAGGAGTGACATGCTTGTTGTGGTTAGGC
                      ____________________________________________________________
consensus             TCATTGCCTCGATGCACATGTGAACATGAGGAAGGAGTGACATGCTTGTTGTGGTTAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O04+          ACATCGAGATATGTGGCTACAGGTTGTGTTGATGGGAAAGTACGGGTATGGGATAGCCTT
rJMSF020O05+          ACATCGAGATATGTGGCTACAGGTTGTGTTGATGGGAAAGTACGGGTATGGGATAGCCTT
                      ____________________________________________________________
consensus             ACATCGAGATATGTGGCTACAGGTTGTGTTGATGGGAAAGTACGGGTATGGGATAGCCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O04+          TCAGGAGATTGTGTGAGAACTTTTAGTGGACATTCTGATGCCATTCAATCACTAGCTGCA
rJMSF020O05+          TCAGGAGATTGTGTGAGAACTTTTAGTGGACATTCTGATGCCATTCAATCACTAGCTGCA
                      ____________________________________________________________
consensus             TCAGGAGATTGTGTGAGAACTTTTAGTGGACATTCTGATGCCATTCAATCACTAGCTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O04+          TCTTCAGATGGGAACTTCCTTGTTTCCGTTTCAATTGACGGGACCGCCCGTGTGTTCGAG
rJMSF020O05+          TCTTCAGATGGGAACTTCCTTGTTTCCGTTTCAATTGACGGGACCGCCCGTGTGTTCGAG
                      ____________________________________________________________
consensus             TCTTCAGATGGGAACTTCCTTGTTTCCGTTTCAATTGACGGGACCGCCCGTGTGTTCGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O04+          ACACCAGAATTCATGTAAGAAAACGCATCATGACAAACTGCTTTTGCCGCGCCTGTAGTG
rJMSF020O05+          ACACCAGAATTCATGTAAGAAAACGCATCATGACAAACTGCTTTTGCCGCGCCTGTAGTG
                      ____________________________________________________________
consensus             ACACCAGAATTCATGTAAGAAAACGCATCATGACAAACTGCTTTTGCCGCGCCTGTAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O04+          GAGTATTGTTTGTTCTTGCAACTGGATTCCCTATAACTGAACTGGCTTTGTTTGTTTCTT
rJMSF020O05+          GAGTATTGTTTGTTCTTGCAACTGGATTCCCTATAACTGAACTGGCTTTGTTTGTTTCTT
                      ____________________________________________________________
consensus             GAGTATTGTTTGTTCTTGCAACTGGATTCCCTATAACTGAACTGGCTTTGTTTGTTTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O04+          TACTGATCTGATTTATACAAAAACAAAGAACCAACCATATGGTTTGTGTTTTAATTAATG
rJMSF020O05+          TACTGATCTGATTTATACAAAAACAAAGAACCAACCATATGGTTTGTGTTTTAATTAATG
                      ____________________________________________________________
consensus             TACTGATCTGATTTATACAAAAACAAAGAACCAACCATATGGTTTGTGTTTTAATTAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O04+          GAGCCACTTCAAAAAGCATGATGATCCTGTTTTATTAA                      
rJMSF020O05+          GAGCCACTTCAAAAAGCATGATGATCCTGTTTTATTAATGATATGAATATTTGCAGTGTC
                      ____________________________________________________________
consensus             GAGCCACTTCAAAAAGCATGATGATCCTGTTTTATTAATGATATGAATATTTGCAGTGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF020O05+          TCAAAATTCTGGTTTGCTAAAGTTGTGTAGCAGATTGGGAGCAAACTCTTCCTCTCTTGT
                      ____________________________________________________________
consensus             TCAAAATTCTGGTTTGCTAAAGTTGTGTAGCAGATTGGGAGCAAACTCTTCCTCTCTTGT