Contig 013922:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001E20Sequence442002037 (3)ref|XP_011098219.1|6e-08PREDICTED: polynucleotide 3'-phosphatase ZDP [Sesamum indicum]722013922 (3)ref|XP_011098219.1|2e-111PREDICTED: polynucleotide 3'-phosphatase ZDP [Sesamum indicum]
JMSF003I15Sequence313002037 (3)ref|XP_011098219.1|7e-09PREDICTED: polynucleotide 3'-phosphatase ZDP [Sesamum indicum]782013922 (3)ref|XP_011098219.1|3e-92PREDICTED: polynucleotide 3'-phosphatase ZDP [Sesamum indicum]
JMSF015C06Sequence427002037 (3)ref|XP_011098219.1|9e-15PREDICTED: polynucleotide 3'-phosphatase ZDP [Sesamum indicum]783013922 (3)ref|XP_011098219.1|7e-94PREDICTED: polynucleotide 3'-phosphatase ZDP [Sesamum indicum]

Alignment

This contig is upended


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rJMSF001E20+            ATCAAGGGGACCTGAGGTGGAGATATCATTCTCTATTATTGATGTGAAGTCCCATTAC
                      ____________________________________________________________
consensus               ATCAAGGGGACCTGAGGTGGAGATATCATTCTCTATTATTGATGTGAAGTCCCATTAC
 
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rJMSF001E20+          AAGGATGCCAAATTATTACCAAAATGGAAGGCGTTTCAGACAACAATATACCTTGAACAG
rJMSF003I15+                                                                   CAG
rJMSF015C06+                                                                   CAG
                      ____________________________________________________________
consensus             AAGGATGCCAAATTATTACCAAAATGGAAGGCGTTTCAGACAACAATATACCTTGAACAG
 
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rJMSF001E20+          GATGAAGGACTTCTTGACTCAGAAAAGATTGCTGCATTTGATTTTGATGGTTGTCTTGCA
rJMSF003I15+          GATGAAGGACTTCTTGACTCAGAAAAGATTGCTGCACTTGATTTTGATGGTTGTCTTGCA
rJMSF015C06+          GATGAAGGACTTCTTGACTCAGAAAAGATTGCTGCATTTGATTTTGATGGTTGTCTTGCA
                      ____________________________________________________________
consensus             GATGAAGGACTTCTTGACTCAGAAAAGATTGCTGCATTTGATTTTGATGGTTGTCTTGCA
 
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rJMSF001E20+          AAGACATCTGTAAAGAGAATTGGTGCAAATGCTTGGTCTCTTATGTACCCTTCAGTACCA
rJMSF003I15+          AAGACATCTGTAAAGAGAATTGGTGCAAATGCTTGGTCTCTTATGTACCCTTCAGTACCA
rJMSF015C06+          AAGACATCTGTAAAGAGAATTGGTGCAAATGCTTGGTCTCTTATGTACCCTTCAGTACCA
                      ____________________________________________________________
consensus             AAGACATCTGTAAAGAGAATTGGTGCAAATGCTTGGTCTCTTATGTACCCTTCAGTACCA
 
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rJMSF001E20+          GAGAAACTTCAGTGCTTGTATAATGATGGCTATAAGCTGGTAATCTTTACCAATGAATCC
rJMSF003I15+          GAGAAACTTCAGTGCTTGTATAATGATGGCTATAAGCTGGTAATCTTTACCAATGAATCC
rJMSF015C06+          GAGAAACTTCAGTGCTTGTATAATGATGGCTATAAGCTGGTAATCTTTACCAATGAATCC
                      ____________________________________________________________
consensus             GAGAAACTTCAGTGCTTGTATAATGATGGCTATAAGCTGGTAATCTTTACCAATGAATCC
 
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rJMSF001E20+          AATATAGAGCGCTGGAAGAATAAGAGACAGACAGCTGTGGACTCTAAAATTGGTCGACTT
rJMSF003I15+          GATATAGAGCGCTGGAAGAATAAGAGACAGACAGCTGTGGACTCTAAAATTGGTCGACTT
rJMSF015C06+          AATATAGAGCGCTGGAAGAATAAGAGACAGACAGCTGTGGACTCTAAAATTGGTCGACTT
                      ____________________________________________________________
consensus             AATATAGAGCGCTGGAAGAATAAGAGACAGACAGCTGTGGACTCTAAAATTGGTCGACTT
 
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rJMSF001E20+          GAAGACTTCATTAAACGCGTGAAGGTCCCAATTCAGGTCTTCATTGCATGTGGCTCAAGT
rJMSF003I15+          GAAGACTTCATTAAACGCGTGAAGGTCCCAATTCAGGTCTTCATTGCATGTGGCTCAAGT
rJMSF015C06+          GAAGACTTCATTAAACGCGTGAAGGTCCCAATTCAGGTCTTCATTGCATGTGGCTCAAGT
                      ____________________________________________________________
consensus             GAAGACTTCATTAAACGCGTGAAGGTCCCAATTCAGGTCTTCATTGCATGTGGCTCAAGT
 
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rJMSF001E20+          ACTGATCCAGCAGATCCCTTTCGTAAACCAAAGATTGGGATGTGGAATCTTCTGAAGAAT
rJMSF003I15+          ACTGATCCAGCAGATCCCTTTCGTAAACCAAAGATTGGGATGTGGAATCTTCTGAAGAAT
rJMSF015C06+          ACTGATCCAGCAGATCCCTTTCGTAAACCAAAGATTGGGATGTGGAATCTTCTGAAGAAT
                      ____________________________________________________________
consensus             ACTGATCCAGCAGATCCCTTTCGTAAACCAAAGATTGGGATGTGGAATCTTCTGAAGAAT
 
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rJMSF001E20+          CACTTCAATTCTGAACTTCCAGTTGACATGGATAAATCCTTTTATGTCGGTGATGCTGCT
rJMSF003I15+          CACTTCAATTCTGAACTTCCAGTTGACATGGATAAATCCTTTTATGTCGGTGATGCTGCT
rJMSF015C06+          CACTTCAATTCTGAACTTCCAGTTGACATGGATAAATCCTTTTATGTCGGTGATGCTGCT
                      ____________________________________________________________
consensus             CACTTCAATTCTGAACTTCCAGTTGACATGGATAAATCCTTTTATGTCGGTGATGCTGCT
 
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rJMSF001E20+          GGTAGGAAGAATGATCATAGTGATGCAGACATTAAATTTGCAGAGGCCATTGGACTAAAG
rJMSF003I15+          GGTAGGAAGAATGATCATAGTGATGCAGACATTAAATTTGCAGAGGCCATTGGACTAAAG
rJMSF015C06+          GGTAGGAAGAATGATCATAGTGATGCAGACATTAAATTTGCAGAGGCCATTGGACTAAAG
                      ____________________________________________________________
consensus             GGTAGGAAGAATGATCATAGTGATGCAGACATTAAATTTGCAGAGGCCATTGGACTAAAG
 
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rJMSF001E20+          TTTTACCTTCCTGAGGATTTCTTTTCAACTTAGAAATATTTTTCACTCAAAAGAGCAGGG
rJMSF003I15+          TTTTACCTTCCTGAGGATTTCTTTTCAACTTAGAAATATTTTTCACTCAAAAGAGCAGGG
rJMSF015C06+          TTTTACCTTCCTGAGGATTTCTTTTCAACTTAGAAATATTTTTCACTCAAAAGAGCAGGG
                      ____________________________________________________________
consensus             TTTTACCTTCCTGAGGATTTCTTTTCAACTTAGAAATATTTTTCACTCAAAAGAGCAGGG
 
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rJMSF001E20+          GACTGTTAAGGGAAACTGCTGTAGCTTAATTATGCCTTCACCCCTTATGTATAAATTGCA
rJMSF003I15+          GACTGTTAAGGGAAACTGCTGTAGCTTAATTATGCCTTCACCCCTTATGTATAAATTGCA
rJMSF015C06+          GACTGTTAAGGGAAACTGCTGTAGCTTAATTATGCCTTCACCCCTTATGTATAAATTGCA
                      ____________________________________________________________
consensus             GACTGTTAAGGGAAACTGCTGTAGCTTAATTATGCCTTCACCCCTTATGTATAAATTGCA
 
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rJMSF001E20+          AATA                                                        
rJMSF003I15+          AATACAGTAGTGTAGTATGGTCTAAACACTAGAGGTATTTTTCTCTGTCGCATGATGTTA
rJMSF015C06+          AATACAGTAGTGTAGTATGGTCTAAACACTAGAGGTATTTTTCTCTGTCGCATGATGTTA
                      ____________________________________________________________
consensus             AATACAGTAGTGTAGTATGGTCTAAACACTAGAGGTATTTTTCTCTGTCGCATGATGTTA
 
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rJMSF003I15+          GCTGCCTTTTTATTTATTACCTTGCTGAGAGTTGCTTTAATTTTCAAGCACCAGCAAGTA
rJMSF015C06+          GCTGCCTTTTTATTTATTACCTTGCTGAGAGTTGCTTTAATTTTCAAGCACCAGCAAGTA
                      ____________________________________________________________
consensus             GCTGCCTTTTTATTTATTACCTTGCTGAGAGTTGCTTTAATTTTCAAGCACCAGCAAGTA
 
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rJMSF003I15+          TCATTTCCTCAACAATGACCTCATGGCACAAACTAATCTGCCATAATGCATTGAGAGCT 
rJMSF015C06+          TCATTTCCTCAACAATGACCTCATGGCACAAACTAATCTGCCATAATGCATTGAGAGCTC
                      ____________________________________________________________
consensus             TCATTTCCTCAACAATGACCTCATGGCACAAACTAATCTGCCATAATGCATTGAGAGCTC