Contig 013904:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010J15Sequence351003438 (2)ref|XP_010255472.1|4e-66PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X1 [Nelumbo nuc782013904 (2)ref|XP_007044457.1|2e-60WRKY domain class transcription factor [Theobroma cacao] gb|EOY00289.1| WRKY dom
JMSF023C10Sequence679002229 (2)emb|CDP00236.1|2e-36unnamed protein product [Coffea canephora]802013904 (2)ref|XP_007044457.1|3e-74WRKY domain class transcription factor [Theobroma cacao] gb|EOY00289.1| WRKY dom

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023C10+                                                          GATATATAAGTT
                      ____________________________________________________________
consensus                                                             GATATATAAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023C10+          NGTCCAGCAGCTCCAAACCATTGCGACTGATGAGATGGAGAACAAACTTCTTCAGTTATA
rJMSF010J15+                                                                    TA
                      ____________________________________________________________
consensus             NGTCCAGCAGCTCCAAACCATTGCGACTGATGAGATGGAGAACAAACTTCTTCAGTTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023C10+          TATGTATGAGAAGTCGAGAAAGTCTGGCGTGTCTTTCGATGTCGTTTATCATGAAAACGT
rJMSF010J15+          TATGTATGAGNAGTCGAGAAAGTCTGGCGTGTCTTTCGATGTCGTTTATCATGAAAACGT
                      ____________________________________________________________
consensus             TATGTATGAGAAGTCGAGAAAGTCTGGCGTGTCTTTCGATGTCGTTTATCATGAAAACGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023C10+          GCGCGTTTTTCTTCATGATGAGAACATTTATAGGATACAATGTTCGTCATCGCCGGCGCA
rJMSF010J15+          GCGCGTTTTTCTTCATGATGAGAACATTTATAGGATACAATGTTCGTCATCGCCGGCGCA
                      ____________________________________________________________
consensus             GCGCGTTTTTCTTCATGATGAGAACATTTATAGGATACAATGTTCGTCATCGCCGGCGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023C10+          GTTGTCCATCCAGCTCATGGATTACGGGTATGATAAGCCTGAAGCAACTGGCGTTGTTAT
rJMSF010J15+          GTTGTCCATCCAGCTCATGGATTACGGGTATGATAAGCCTGAAGCAACTGGCGTTGTTAT
                      ____________________________________________________________
consensus             GTTGTCCATCCAGCTCATGGATTACGGGTATGATAAGCCTGAAGCAACTGGCGTTGTTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023C10+          GGACCCGAACTTTGCTGCTTATTTGAGCAACGATCTACTCTTGTGTGCTCCCGAGCAAAA
rJMSF010J15+          GGACCCGAACTTTGCTGCTTATTTGAGCAACGATCTACTCTTGTGTGCTCCCGAGCAAAA
                      ____________________________________________________________
consensus             GGACCCGAACTTTGCTGCTTATTTGAGCAACGATCTACTCTTGTGTGCTCCCGAGCAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023C10+          GGGAATCCCTGGGGTGTTCTTGAAGAGAAATAAACAAAAATATCCATCCCAGGATGAGAC
rJMSF010J15+          GGGAATCCCTGGGGTGTTCTTGAAGAGAAATAAACAAAAATATCCATCCCAGGATGAGAC
                      ____________________________________________________________
consensus             GGGAATCCCTGGGGTGTTCTTGAAGAGAAATAAACAAAAATATCCATCCCAGGATGAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023C10+          CTCCGCTACACTCGAGGCAATAGCGGGACTCAAAGTTCTGAACGGTCTGGAATGCAAGAT
rJMSF010J15+          CTCCGCTACACTCGAGGCAATAGCGGGACTCAAAGTTCTGAACGGTCTGGAATGCAAGAT
                      ____________________________________________________________
consensus             CTCCGCTACACTCGAGGCAATAGCGGGACTCAAAGTTCTGAACGGTCTGGAATGCAAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023C10+          AGCTTGCAAGTCACTGAAGGTCTCGTATGTTCTGGACACCGAAGACTCGATGTTCAGGAT
rJMSF010J15+          AGCTTGCAAGTCACTGAAGGTCTCGTATGTTCTGGACACCGAAGACTCGATGTTCAGGAT
                      ____________________________________________________________
consensus             AGCTTGCAAGTCACTGAAGGTCTCGTATGTTCTGGACACCGAAGACTCGATGTTCAGGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023C10+          GAATAAACGGAGGAGAACACTGCACCCGAGTGTCTCGTTCAACAACAGCTCCAATTCTTT
rJMSF010J15+          GAATAAACGGAGGAGAACACTGCACCCGAGTGTCTCGTTCAACAACAGCTCCAATTCTTT
                      ____________________________________________________________
consensus             GAATAAACGGAGGAGAACACTGCACCCGAGTGTCTCGTTCAACAACAGCTCCAATTCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023C10+          CAACGGGTCCCATCGAGCACAGCGCTTCCGTAGATTACTTTTCAGTTGACAAATGTGAGT
rJMSF010J15+          CAACGGGTCCCATCGAGCACAGCGCTTCCGTAGATTACTTTTCAGTTGACAAATGTGAGT
                      ____________________________________________________________
consensus             CAACGGGTCCCATCGAGCACAGCGCTTCCGTAGATTACTTTTCAGTTGACAAATGTGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023C10+          TTTTCTTTTTATTGACAGCAAGGTGTTAAGGTGGTATAGCATAGAGACTGAAGTGTAACA
rJMSF010J15+          TTTTCTTTTTATTGACAGCAAGGTGTTAAGGTGGTATAGCATAGAGACTGAAGTGTAACA
                      ____________________________________________________________
consensus             TTTTCTTTTTATTGACAGCAAGGTGTTAAGGTGGTATAGCATAGAGACTGAAGTGTAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023C10+          TGACTTCTGACTTATATTATATGTTTTCTTAGTTATTTAATAATTTCTTTTTTTATTTTT
rJMSF010J15+          TGACTTCTGACTTATATTATATGTTTTCTTAGTTATTTAATAATTTCTTTTTTTATTTTT
                      ____________________________________________________________
consensus             TGACTTCTGACTTATATTATATGTTTTCTTAGTTATTTAATAATTTCTTTTTTTATTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023C10+          TATTTTTGGTTAACTTGGTAGTTTCATCATTCTAATAAGAATGATATATAGGTTCAGATA
rJMSF010J15+          TATTTTTGGTTAACTTGGTAGTTTCATCATTCTAATAAGAATGATATATAGGTTCAGATA
                      ____________________________________________________________
consensus             TATTTTTGGTTAACTTGGTAGTTTCATCATTCTAATAAGAATGATATATAGGTTCAGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023C10+          ACAGCAAATG                                                  
rJMSF010J15+          ACAGCAAATGTGTAGTACAATTTTCTCATAACTTATAGCCCTTTTTGCTGTACTTAAATA
                      ____________________________________________________________
consensus             ACAGCAAATGTGTAGTACAATTTTCTCATAACTTATAGCCCTTTTTGCTGTACTTAAATA