| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF004C10 | Sequence | 316 | 006539 (5) | ref|XP_007025158.1| | 8e-17 | Purine permease 10 [Theobroma cacao] gb|EOY27780.1| Purine permease 10 [Theobrom | 455 | 013898 (3) | gb|AAS79605.1| | 4e-59 | putative tRNA isopentenylpyrophosphatase [Ipomoea trifida] |
| JMSF004E12 | Sequence | 382 | 003528 (2) | gb|AAS79605.1| | 5e-61 | putative tRNA isopentenylpyrophosphatase [Ipomoea trifida] | 441 | 013898 (3) | gb|AAS79605.1| | 2e-46 | putative tRNA isopentenylpyrophosphatase [Ipomoea trifida] |
| JMSF009F12 | Sequence | 366 | 003528 (2) | gb|AAS79605.1| | 4e-64 | putative tRNA isopentenylpyrophosphatase [Ipomoea trifida] | 824 | 013898 (3) | gb|AAS79605.1| | 7e-60 | putative tRNA isopentenylpyrophosphatase [Ipomoea trifida] |
This contig is upended
. : . : . : . : . : . :
rJMSF009F12+ CAACGACTTTTTGACATGCTATTTCATAAACATGAAGAATCTTG
____________________________________________________________
consensus CAACGACTTTTTGACATGCTATTTCATAAACATGAAGAATCTTG
. : . : . : . : . : . :
rJMSF009F12+ TGATGCATCCNTCTCCCAAACATGGAGTATCGAGTCTTTTAAACAAACTATACAGGATAT
____________________________________________________________
consensus TGATGCATCCNTCTCCCAAACATGGAGTATCGAGTCTTTTAAACAAACTATACAGGATAT
. : . : . : . : . : . :
rJMSF009F12+ TCTATATGGTTCTTGTGATGATGAGAGAAAAGTTCTTCTCACTGCAGCTATTGATCAAAT
____________________________________________________________
consensus TCTATATGGTTCTTGTGATGATGAGAGAAAAGTTCTTCTCACTGCAGCTATTGATCAAAT
. : . : . : . : . : . :
rJMSF009F12+ GAAATTTAACACCAGAAGACTAGTTCGCCGCCAAGTAAGGAAAATCTAATTTGCAACCTT
____________________________________________________________
consensus GAAATTTAACACCAGAAGACTAGTTCGCCGCCAAGTAAGGAAAATCTAATTTGCAACCTT
. : . : . : . : . : . :
rJMSF009F12+ TGTATGCTTCCTCCTGTACACTTGAAACCAAAAGTGAAATTTACTCAAATAGTTATCCAA
____________________________________________________________
consensus TGTATGCTTCCTCCTGTACACTTGAAACCAAAAGTGAAATTTACTCAAATAGTTATCCAA
. : . : . : . : . : . :
rJMSF009F12+ TTGGAAAGCGTTAAATTCTTCATTGTTGACGACTTTGTTGTTCCCAGAGGAGAAGGCTTC
____________________________________________________________
consensus TTGGAAAGCGTTAAATTCTTCATTGTTGACGACTTTGTTGTTCCCAGAGGAGAAGGCTTC
. : . : . : . : . : . :
rJMSF004C10+ TTGGATGGGAGATACATTACATTGATGTTACAAGCTCCATAT
rJMSF009F12+ AACGCCTGCAAATGCTCTTTGGATGGGAGATACATTACATTGATGTTACAAGCTCCATAT
____________________________________________________________
consensus AACGCCTGCAAATGCTCTTTGGATGGGAGATACATTACATTGATGTTACAAGCTCCATAT
. : . : . : . : . : . :
rJMSF004E12+ TGATGAGACCTGGGCAGCAGAAGTGGTCTTGCCAGCTGCGACCACAATAG
rJMSF004C10+ TAGGGGCTTCTGATGAGACCTGGGCAGCAGAAGTGGTCTTGCCAGCTGCGACCACAATAG
rJMSF009F12+ TAGGGGCTTCTGATGAGACCTGGGCAGCAGAAGTGGTCTTGCCAGCTGCGACCACAATAG
____________________________________________________________
consensus TAGGGGCTTCTGATGAGACCTGGGCAGCAGAAGTGGTCTTGCCAGCTGCGACCACAATAG
. : . : . : . : . : . :
rJMSF004E12+ AATCCTNTNTCAATCGCCAATCCTGCCCGGAAAACGCCAGAAATAACACCGACAACATAA
rJMSF004C10+ AATCCTTTCTCAATCGCCAATCCTGCCCGGAAAACGCCAGAAATAACACCGACAACATAA
rJMSF009F12+ AATCCTTTCTCAATCGCCAATCCTGCCCGGAAAACGCCAGAAATAACACCGACAACATAA
____________________________________________________________
consensus AATCCTTTCTCAATCGCCAATCCTGCCCGGAAAACGCCAGAAATAACACCGACAACATAA
. : . : . : . : . : . :
rJMSF004E12+ AACTAAAGCAAAGGGATCTCTGGAGTCAGTATATTTGTGAGGCATGCGGGAACAAGGTCC
rJMSF004C10+ AACTAAAGCAAAGGGATCTCTGGAGTCAGTATATTTGTGAGGCATGCGGGAACAAGGTCC
rJMSF009F12+ AACTAAAGCAAAGGGATCTCTGGAGTCAGTATATTTGTGAGGCATGCGGGAACAAGGTCC
____________________________________________________________
consensus AACTAAAGCAAAGGGATCTCTGGAGTCAGTATATTTGTGAGGCATGCGGGAACAAGGTCC
. : . : . : . : . : . :
rJMSF004E12+ TTAGAGGTGCTCATGAATGGGAACAACACAGACAAGGCCGTAGCCATCGAAAACGAATTT
rJMSF004C10+ TTAGAGGTGCTCATGAATGGGAACAACACAGACAAGGCCGTAGCCATCGAAAACGAATTT
rJMSF009F12+ TTAGAGGTGCTCATGAATGGGAACAACACAGACAGGGCCGTAGCCATCGAAAACGAATTT
____________________________________________________________
consensus TTAGAGGTGCTCATGAATGGGAACAACACAGACAAGGCCGTAGCCATCGAAAACGAATTT
. : . : . : . : . : . :
rJMSF004E12+ CTAAGCTTAAGAAGTTTGAGAGAATGTCTGTAAATTAGCAGCACCNTCACATTTTCTTCT
rJMSF004C10+ CTAAGCTTAAGAAGTTTGAGAGAATGTCTGTAAATTAGCAGCACCATCACATTTTCTTCT
rJMSF009F12+ CTAAGCTTAAGAAGTTTGAGAGAATGTCTGTAAATTAGCAGCACCATCACATTTTCTTCT
____________________________________________________________
consensus CTAAGCTTAAGAAGTTTGAGAGAATGTCTGTAAATTAGCAGCACCATCACATTTTCTTCT
. : . : . : . : . : . :
rJMSF004E12+ CGNTAGGCCTGCAAAAATGACTCTAGGAAACCNTTATGCTCCTTCAACCTTAAATACCGT
rJMSF004C10+ CGCTAGGCCTGCAAAAATGACTCTAGGAAACCATTATGCTCCTTCAACCTTAAATACCGT
rJMSF009F12+ CGCTAGGCCTGCAAAAATGACTCTAGGAAACCATTATGCTCCTTCAACCTTAAATACCGT
____________________________________________________________
consensus CGCTAGGCCTGCAAAAATGACTCTAGGAAACCATTATGCTCCTTCAACCTTAAATACCGT
. : . : . : . : . : . :
rJMSF004E12+ CTTCTTNTTCATCTTTCNNATGTTCTCATCTATGCTTCATA
rJMSF004C10+ CTTCTTTTTCATCTTTCTTATGTTCTNATCTATGCTTCATA
rJMSF009F12+ CTTCTTTTTCATCTTTCTTATGTTCTTATCTATGCTTCATATTTCATAGCCAGTATGCTT
____________________________________________________________
consensus CTTCTTTTTCATCTTTCTTATGTTCTTATCTATGCTTCATATTTCATAGCCAGTATGCTT