Contig 013891:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008F03Sequence791013891 (4)ref|XP_006357457.1|1e-27PREDICTED: putative late blight resistance protein homolog R1B-23-like [Solanum
JMSF008J01Sequence335003904 (5)gb|AAV88066.1|2e-05NBS-LRR protein [Ipomoea batatas]740013891 (4)ref|XP_009618655.1|8e-28PREDICTED: putative late blight resistance protein homolog R1B-16 [Nicotiana to
JMSF035N18Sequence669003904 (5)gb|AAV88066.1|2e-07NBS-LRR protein [Ipomoea batatas]655013891 (4)ref|XP_009618655.1|2e-26PREDICTED: putative late blight resistance protein homolog R1B-16 [Nicotiana to
JMSF050I13Sequence677003904 (5)gb|AAV88066.1|2e-07NBS-LRR protein [Ipomoea batatas]743013891 (4)ref|XP_006357457.1|6e-28PREDICTED: putative late blight resistance protein homolog R1B-23-like [Solanum

Alignment

This contig is upended


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rJMSF008F03+                                                         TTCAGTTGATTGG
                      ____________________________________________________________
consensus                                                            TTCAGTTGATTGG
 
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rJMSF050I13+                                          CTACAACATTTAGATAGTTACAAAGG-T
rJMSF008J01+                                          CTACAACATTTAGATAGTTACAAAGGTT
rJMSF008F03+          ATTAATAAAACGAGCATTTAGAGTTTCCACAACTACACCATTTAGATAGTTACAAAGG-T
                      ____________________________________________________________
consensus             ATTAATAAAACGAGCATTTAGAGTTTCCACAACTACAACATTTAGATAGTTACAAAGG-T
 
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rJMSF050I13+          CTGCGTGATTTTCCCATATTTTTTCATCAAAACTTGAAGAGCATTTTTGGGTTGTTTCTT
rJMSF008J01+          CTGCGTGATTTTCCCATA-TTTTTCATCAAAACTTGAAGAGCATTTTTGGGTTGTTTCTT
rJMSF008F03+          CTGCGTGATTTTCCCATATTTTTTCATCAAAACTTGAAGAGCATTTTTGGGTTGTTTCTT
                      ____________________________________________________________
consensus             CTGCGTGATTTTCCCATATTTTTTCATCAAAACTTGAAGAGCATTTTTGGGTTGTTTCTT
 
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rJMSF050I13+          CATCAATGCACAAAAGAATTATTTAAAAATATTCCATACCTAAAGAAGGTAGGGATTGTA
rJMSF008J01+          CATCAATGCACAAAAGAATTATTTAAAAATATTCCATACCTAAAGAAGGTAGGGATTGTA
rJMSF035N18+             CAATGCACAAAAGAATTATTTAAAAATATTCCATACCTAAAGAAGGTAGGGATTGTA
rJMSF008F03+          CATCAATGCACAAAAGAATTATTTAAAAATATTCCATACCTAAAGAAGGTAGGGATTGTA
                      ____________________________________________________________
consensus             CATCAATGCACAAAAGAATTATTTAAAAATATTCCATACCTAAAGAAGGTAGGGATTGTA
 
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rJMSF050I13+          TTTGGAGATGGTTTTTGGAGTGATGATTGCATTAATAACATTGCCTATTCACACCAGCTC
rJMSF008J01+          TTTGGAGATGGTTTTTGGAGTGATGATTGCATTAATAACATTGCCTATTCACACCAGCTC
rJMSF035N18+          TTTGGAGATGGTTTTTGGAGTGATGATTGCATTAATAACATTGCCTATTCACACCAGCTC
rJMSF008F03+          TTTGGAGATGGTTTTTGGAGTGATGATTGCATTAATAACATTGCCTATTCACACCAGCTC
                      ____________________________________________________________
consensus             TTTGGAGATGGTTTTTGGAGTGATGATTGCATTAATAACATTGCCTATTCACACCAGCTC
 
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rJMSF050I13+          CAGAGTCTGCATCTTTGTCATCTATTTATTGGGCCTCGGTTGGTGATTCCAAATAATAAC
rJMSF008J01+          CAGAGTCTGCATCTTTGTCATCTATTTATTGGGCCTCGGTTGGTGATTCCAAATAATAAC
rJMSF035N18+          CAGAGTCTGCATCTTTGTCATCTATTTATTGGGCCTCGGTTGGTGATTCCAAATAATAAC
rJMSF008F03+          CAGAGTCTGCATCTTTGTCATCTATTTATTGGGCCTCGGTTGGTGATTCCAAATAATAAC
                      ____________________________________________________________
consensus             CAGAGTCTGCATCTTTGTCATCTATTTATTGGGCCTCGGTTGGTGATTCCAAATAATAAC
 
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rJMSF050I13+          CACCTTGTTTGCTTGAAAAACCTTATGAGGTTGAGGTTTTCCTACTTGAGATTTGAGTGG
rJMSF008J01+          CACCTTGTTTGCTTGAAAAACCTTATGAGGTTGAGGTTTTCCTACTTGAGATTTGAGTGG
rJMSF035N18+          CACCTTGTTTGCTTGAAAAACCTTATGAGGTTGAGGTTTTCCTACTTGAGATTTGAGTGG
rJMSF008F03+          CACCTTGTTTGCTTGAAAAACCTTATGAGGTTGAGGTTTTCCTACTTGAGATTTGAGTGG
                      ____________________________________________________________
consensus             CACCTTGTTTGCTTGAAAAACCTTATGAGGTTGAGGTTTTCCTACTTGAGATTTGAGTGG
 
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rJMSF050I13+          AAGGCAATTAATATTCTTAGCAAGTGGCCTAAACTTGAGGTACTAAGGTTAAACAATTGT
rJMSF008J01+          AAGGCAATTAATATTCTTAGCAAGTGGCCTAAACTTGAGGTACTAAGGTTAAACAATTGT
rJMSF035N18+          AAGGCAATTAATATTCTTAGCAAGTGGCCTAAACTTGAGGTACTAAGGTTAAACAATTGT
rJMSF008F03+          AAGGCAATTAATATTCTTAGCAAGTGGCCTAAACTTGAGGTACTAAGGTTAAACAATTGT
                      ____________________________________________________________
consensus             AAGGCAATTAATATTCTTAGCAAGTGGCCTAAACTTGAGGTACTAAGGTTAAACAATTGT
 
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rJMSF050I13+          GACATCATTGGTGAAGAGTGGGAACTATTGGAGAATGAGAATTTTGACCACTTAATTTAT
rJMSF008J01+          GACATCATTGGTGAAGAGTGGGAACTATTGGAGAATGAGAATTTTGACCACTTAATTTAT
rJMSF035N18+          GACATCATTGGTGAAGAGTGGGAACTATTGGAGAATGAGAATTTTGACCACTTAATTTAT
rJMSF008F03+          GACATCATTGGTGAAGAGTGGGAACTATTGGAGAATGAGAATTTTGACCACTTAATTTAT
                      ____________________________________________________________
consensus             GACATCATTGGTGAAGAGTGGGAACTATTGGAGAATGAGAATTTTGACCACTTAATTTAT
 
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rJMSF050I13+          TTGGAACTTTTTCGCAATGGTCTAAAGCATTGGGAAGCAAGTGCCTGTCATTTCCCAAAT
rJMSF008J01+          TTGGAACTTTTTCGCAATGGTCTAAAGCATTGGGAAGCAAGTGCCTGTCATTTCCCAAAT
rJMSF035N18+          TTGGAACTTTTTCGCAATGGTCTAAAGCATTGGGAAGCAAGTGCCTGTCATTTCCCAAAT
rJMSF008F03+          TTGGAACTTTTTCGCAATGGTCTAAAGCATTGGGAAGCAAGTGCCTGTCATTTCCCAAAT
                      ____________________________________________________________
consensus             TTGGAACTTTTTCGCAATGGTCTAAAGCATTGGGAAGCAAGTGCCTGTCATTTCCCAAAT
 
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rJMSF050I13+          CTTGAGCGCCTAGTTCTTATAAGGTGTCCTCAATTGGTAAAGATCCCAGCTGACTTTGCA
rJMSF008J01+          CTTGAGCGCCTAGTTCTTATAAGGTGTCCTCAATTGGTAAAGATCCCAGCTGACTTTGCA
rJMSF035N18+          CTTGAGCGCCTAGTTCTTATAAGGTGTCCTCAATTGGTAAAGATCCCAGCTGACTTTGCA
rJMSF008F03+          CTTGAGCGCCTAGTTCTTATAAGGTGTCCTCAATTGGTAAAGATCCCAGCTGACTTTGCA
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consensus             CTTGAGCGCCTAGTTCTTATAAGGTGTCCTCAATTGGTAAAGATCCCAGCTGACTTTGCA
 
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rJMSF050I13+          GAAATTCTAAATTTAAAGTCAATCGAATTGACTGAGTGTCTTTGTTCTGCGGTGGATTCT
rJMSF008J01+          GAAATTCTAAATTTAAAGTCAATCGAATTGACTGAGTGTCTTTGTTCTGCGGTGGATTCT
rJMSF035N18+          GAAATTCTAAATTTAAAGTCAATCGAATTGACTGAGTGTCTTTGTTCTGCGGTGGATTCT
rJMSF008F03+          GAAATTCTAAATTTAAAGTCAATCGAATTGACTGAGTGTCTTTGTTCTGCGGTGGATTCT
                      ____________________________________________________________
consensus             GAAATTCTAAATTTAAAGTCAATCGAATTGACTGAGTGTCTTTGTTCTGCGGTGGATTCT
 
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rJMSF050I13+          GCAAAGGAAATTCAAGAACAGCAACATGAGTATGGAAATGATAATATGGTCGTCATTGAG
rJMSF008J01+          GCAAAGGAAATTCAAGAACAGCAACATGAGTATGGAAATGATAATATGGTCGTCATTGAG
rJMSF035N18+          GCAAAGGAAATTCAAGAACAGCAACATGAGTATGGAAATGATAATATGGTCGTCATTGAG
rJMSF008F03+          GCAAAGGAAATTCAAGAACAGCAACATGAGTATGGAAATGATAATATGGTCGTCATTGAG
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consensus             GCAAAGGAAATTCAAGAACAGCAACATGAGTATGGAAATGATAATATGGTCGTCATTGAG
 
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rJMSF050I13+          GAAAATACTATATCGGAATGGTGATGATGATGATGATGATAA                  
rJMSF008J01+          GAAAATACTATATCGG-ATGGTGATGATGATGATGATGATAA                  
rJMSF035N18+          GAAAATACTATATCGG-ATGGTGATGATGATGATGATGATAA                  
rJMSF008F03+          GAAAATACTATATCGG-ATGGTGATGATGATGATGATGATAACTGATAATGATGATAATG
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consensus             GAAAATACTATATCGG-ATGGTGATGATGATGATGATGATAACTGATAATGATGATAATG