clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF008F03 | Sequence | 791 | 013891 (4) | ref|XP_006357457.1| | 1e-27 | PREDICTED: putative late blight resistance protein homolog R1B-23-like [Solanum | |||||
JMSF008J01 | Sequence | 335 | 003904 (5) | gb|AAV88066.1| | 2e-05 | NBS-LRR protein [Ipomoea batatas] | 740 | 013891 (4) | ref|XP_009618655.1| | 8e-28 | PREDICTED: putative late blight resistance protein homolog R1B-16 [Nicotiana to |
JMSF035N18 | Sequence | 669 | 003904 (5) | gb|AAV88066.1| | 2e-07 | NBS-LRR protein [Ipomoea batatas] | 655 | 013891 (4) | ref|XP_009618655.1| | 2e-26 | PREDICTED: putative late blight resistance protein homolog R1B-16 [Nicotiana to |
JMSF050I13 | Sequence | 677 | 003904 (5) | gb|AAV88066.1| | 2e-07 | NBS-LRR protein [Ipomoea batatas] | 743 | 013891 (4) | ref|XP_006357457.1| | 6e-28 | PREDICTED: putative late blight resistance protein homolog R1B-23-like [Solanum |
This contig is upended
. : . : . : . : . : . :
rJMSF008F03+ TTCAGTTGATTGG
____________________________________________________________
consensus TTCAGTTGATTGG
. : . : . : . : . : . :
rJMSF050I13+ CTACAACATTTAGATAGTTACAAAGG-T
rJMSF008J01+ CTACAACATTTAGATAGTTACAAAGGTT
rJMSF008F03+ ATTAATAAAACGAGCATTTAGAGTTTCCACAACTACACCATTTAGATAGTTACAAAGG-T
____________________________________________________________
consensus ATTAATAAAACGAGCATTTAGAGTTTCCACAACTACAACATTTAGATAGTTACAAAGG-T
. : . : . : . : . : . :
rJMSF050I13+ CTGCGTGATTTTCCCATATTTTTTCATCAAAACTTGAAGAGCATTTTTGGGTTGTTTCTT
rJMSF008J01+ CTGCGTGATTTTCCCATA-TTTTTCATCAAAACTTGAAGAGCATTTTTGGGTTGTTTCTT
rJMSF008F03+ CTGCGTGATTTTCCCATATTTTTTCATCAAAACTTGAAGAGCATTTTTGGGTTGTTTCTT
____________________________________________________________
consensus CTGCGTGATTTTCCCATATTTTTTCATCAAAACTTGAAGAGCATTTTTGGGTTGTTTCTT
. : . : . : . : . : . :
rJMSF050I13+ CATCAATGCACAAAAGAATTATTTAAAAATATTCCATACCTAAAGAAGGTAGGGATTGTA
rJMSF008J01+ CATCAATGCACAAAAGAATTATTTAAAAATATTCCATACCTAAAGAAGGTAGGGATTGTA
rJMSF035N18+ CAATGCACAAAAGAATTATTTAAAAATATTCCATACCTAAAGAAGGTAGGGATTGTA
rJMSF008F03+ CATCAATGCACAAAAGAATTATTTAAAAATATTCCATACCTAAAGAAGGTAGGGATTGTA
____________________________________________________________
consensus CATCAATGCACAAAAGAATTATTTAAAAATATTCCATACCTAAAGAAGGTAGGGATTGTA
. : . : . : . : . : . :
rJMSF050I13+ TTTGGAGATGGTTTTTGGAGTGATGATTGCATTAATAACATTGCCTATTCACACCAGCTC
rJMSF008J01+ TTTGGAGATGGTTTTTGGAGTGATGATTGCATTAATAACATTGCCTATTCACACCAGCTC
rJMSF035N18+ TTTGGAGATGGTTTTTGGAGTGATGATTGCATTAATAACATTGCCTATTCACACCAGCTC
rJMSF008F03+ TTTGGAGATGGTTTTTGGAGTGATGATTGCATTAATAACATTGCCTATTCACACCAGCTC
____________________________________________________________
consensus TTTGGAGATGGTTTTTGGAGTGATGATTGCATTAATAACATTGCCTATTCACACCAGCTC
. : . : . : . : . : . :
rJMSF050I13+ CAGAGTCTGCATCTTTGTCATCTATTTATTGGGCCTCGGTTGGTGATTCCAAATAATAAC
rJMSF008J01+ CAGAGTCTGCATCTTTGTCATCTATTTATTGGGCCTCGGTTGGTGATTCCAAATAATAAC
rJMSF035N18+ CAGAGTCTGCATCTTTGTCATCTATTTATTGGGCCTCGGTTGGTGATTCCAAATAATAAC
rJMSF008F03+ CAGAGTCTGCATCTTTGTCATCTATTTATTGGGCCTCGGTTGGTGATTCCAAATAATAAC
____________________________________________________________
consensus CAGAGTCTGCATCTTTGTCATCTATTTATTGGGCCTCGGTTGGTGATTCCAAATAATAAC
. : . : . : . : . : . :
rJMSF050I13+ CACCTTGTTTGCTTGAAAAACCTTATGAGGTTGAGGTTTTCCTACTTGAGATTTGAGTGG
rJMSF008J01+ CACCTTGTTTGCTTGAAAAACCTTATGAGGTTGAGGTTTTCCTACTTGAGATTTGAGTGG
rJMSF035N18+ CACCTTGTTTGCTTGAAAAACCTTATGAGGTTGAGGTTTTCCTACTTGAGATTTGAGTGG
rJMSF008F03+ CACCTTGTTTGCTTGAAAAACCTTATGAGGTTGAGGTTTTCCTACTTGAGATTTGAGTGG
____________________________________________________________
consensus CACCTTGTTTGCTTGAAAAACCTTATGAGGTTGAGGTTTTCCTACTTGAGATTTGAGTGG
. : . : . : . : . : . :
rJMSF050I13+ AAGGCAATTAATATTCTTAGCAAGTGGCCTAAACTTGAGGTACTAAGGTTAAACAATTGT
rJMSF008J01+ AAGGCAATTAATATTCTTAGCAAGTGGCCTAAACTTGAGGTACTAAGGTTAAACAATTGT
rJMSF035N18+ AAGGCAATTAATATTCTTAGCAAGTGGCCTAAACTTGAGGTACTAAGGTTAAACAATTGT
rJMSF008F03+ AAGGCAATTAATATTCTTAGCAAGTGGCCTAAACTTGAGGTACTAAGGTTAAACAATTGT
____________________________________________________________
consensus AAGGCAATTAATATTCTTAGCAAGTGGCCTAAACTTGAGGTACTAAGGTTAAACAATTGT
. : . : . : . : . : . :
rJMSF050I13+ GACATCATTGGTGAAGAGTGGGAACTATTGGAGAATGAGAATTTTGACCACTTAATTTAT
rJMSF008J01+ GACATCATTGGTGAAGAGTGGGAACTATTGGAGAATGAGAATTTTGACCACTTAATTTAT
rJMSF035N18+ GACATCATTGGTGAAGAGTGGGAACTATTGGAGAATGAGAATTTTGACCACTTAATTTAT
rJMSF008F03+ GACATCATTGGTGAAGAGTGGGAACTATTGGAGAATGAGAATTTTGACCACTTAATTTAT
____________________________________________________________
consensus GACATCATTGGTGAAGAGTGGGAACTATTGGAGAATGAGAATTTTGACCACTTAATTTAT
. : . : . : . : . : . :
rJMSF050I13+ TTGGAACTTTTTCGCAATGGTCTAAAGCATTGGGAAGCAAGTGCCTGTCATTTCCCAAAT
rJMSF008J01+ TTGGAACTTTTTCGCAATGGTCTAAAGCATTGGGAAGCAAGTGCCTGTCATTTCCCAAAT
rJMSF035N18+ TTGGAACTTTTTCGCAATGGTCTAAAGCATTGGGAAGCAAGTGCCTGTCATTTCCCAAAT
rJMSF008F03+ TTGGAACTTTTTCGCAATGGTCTAAAGCATTGGGAAGCAAGTGCCTGTCATTTCCCAAAT
____________________________________________________________
consensus TTGGAACTTTTTCGCAATGGTCTAAAGCATTGGGAAGCAAGTGCCTGTCATTTCCCAAAT
. : . : . : . : . : . :
rJMSF050I13+ CTTGAGCGCCTAGTTCTTATAAGGTGTCCTCAATTGGTAAAGATCCCAGCTGACTTTGCA
rJMSF008J01+ CTTGAGCGCCTAGTTCTTATAAGGTGTCCTCAATTGGTAAAGATCCCAGCTGACTTTGCA
rJMSF035N18+ CTTGAGCGCCTAGTTCTTATAAGGTGTCCTCAATTGGTAAAGATCCCAGCTGACTTTGCA
rJMSF008F03+ CTTGAGCGCCTAGTTCTTATAAGGTGTCCTCAATTGGTAAAGATCCCAGCTGACTTTGCA
____________________________________________________________
consensus CTTGAGCGCCTAGTTCTTATAAGGTGTCCTCAATTGGTAAAGATCCCAGCTGACTTTGCA
. : . : . : . : . : . :
rJMSF050I13+ GAAATTCTAAATTTAAAGTCAATCGAATTGACTGAGTGTCTTTGTTCTGCGGTGGATTCT
rJMSF008J01+ GAAATTCTAAATTTAAAGTCAATCGAATTGACTGAGTGTCTTTGTTCTGCGGTGGATTCT
rJMSF035N18+ GAAATTCTAAATTTAAAGTCAATCGAATTGACTGAGTGTCTTTGTTCTGCGGTGGATTCT
rJMSF008F03+ GAAATTCTAAATTTAAAGTCAATCGAATTGACTGAGTGTCTTTGTTCTGCGGTGGATTCT
____________________________________________________________
consensus GAAATTCTAAATTTAAAGTCAATCGAATTGACTGAGTGTCTTTGTTCTGCGGTGGATTCT
. : . : . : . : . : . :
rJMSF050I13+ GCAAAGGAAATTCAAGAACAGCAACATGAGTATGGAAATGATAATATGGTCGTCATTGAG
rJMSF008J01+ GCAAAGGAAATTCAAGAACAGCAACATGAGTATGGAAATGATAATATGGTCGTCATTGAG
rJMSF035N18+ GCAAAGGAAATTCAAGAACAGCAACATGAGTATGGAAATGATAATATGGTCGTCATTGAG
rJMSF008F03+ GCAAAGGAAATTCAAGAACAGCAACATGAGTATGGAAATGATAATATGGTCGTCATTGAG
____________________________________________________________
consensus GCAAAGGAAATTCAAGAACAGCAACATGAGTATGGAAATGATAATATGGTCGTCATTGAG
. : . : . : . : . : . :
rJMSF050I13+ GAAAATACTATATCGGAATGGTGATGATGATGATGATGATAA
rJMSF008J01+ GAAAATACTATATCGG-ATGGTGATGATGATGATGATGATAA
rJMSF035N18+ GAAAATACTATATCGG-ATGGTGATGATGATGATGATGATAA
rJMSF008F03+ GAAAATACTATATCGG-ATGGTGATGATGATGATGATGATAACTGATAATGATGATAATG
____________________________________________________________
consensus GAAAATACTATATCGG-ATGGTGATGATGATGATGATGATAACTGATAATGATGATAATG