Contig 013858:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021M23Sequence721013858 (2)gb|ADV04059.1|3e-112DEAD/DEAH box helicase 8 [Hevea brasiliensis]
JMFF050E01Sequence616006474 (5)ref|XP_009794054.1|6e-57PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like isoform X2 [Nicotiana syl597013858 (2)gb|ADV04059.1|1e-72DEAD/DEAH box helicase 8 [Hevea brasiliensis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF021M23+                                         CAGTATTATGCTTTTGTTGAAGAAAGGCA
                      ____________________________________________________________
consensus                                            CAGTATTATGCTTTTGTTGAAGAAAGGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF021M23+          GAAAGTGCATTGCCTGAACACACTCTTCTCCAAGCTACAAATCAACCAATCAATTATTTT
                      ____________________________________________________________
consensus             GAAAGTGCATTGCCTGAACACACTCTTCTCCAAGCTACAAATCAACCAATCAATTATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF021M23+          CTGCAATTCTGTAAATCGTGTTGAACTTCTAGCCAAGAAGATCACAGAGCTTGGCTATTC
                      ____________________________________________________________
consensus             CTGCAATTCTGTAAATCGTGTTGAACTTCTAGCCAAGAAGATCACAGAGCTTGGCTATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF021M23+          TTGCTTTTACATTCATGCAAAGATGCTTCAAGACCACCGAAATAGAGTATTTCATGACTT
rJMFF050E01+                    ATTCATGCAAAGATGCTTCAAGACCACCGAAATAGAGTATTTCATGACTT
                      ____________________________________________________________
consensus             TTGCTTTTACATTCATGCAAAGATGCTTCAAGACCACCGAAATAGAGTATTTCATGACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF021M23+          CCGCAATGGTGCCTGTAGGAATCTTGTTTGTACTGATCTGTTTACAAGAGGGATAGATAT
rJMFF050E01+          CCGCAATGGTGCCTGTAGGAATCTTGTTTGTACTGATCTGTTTACAAGAGGGATAGATAT
                      ____________________________________________________________
consensus             CCGCAATGGTGCCTGTAGGAATCTTGTTTGTACTGATCTGTTTACAAGAGGGATAGATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF021M23+          TCAAGCAGTCAATGTTGTTATTAATTTTGATTTCCCAAAGAATTCAGAAACATATCTACA
rJMFF050E01+          TCAAGCAGTCAATGTTGTTATTAATTTTGATTTCCCAAAGAATTCAGAAACATATCTACA
                      ____________________________________________________________
consensus             TCAAGCAGTCAATGTTGTTATTAATTTTGATTTCCCAAAGAATTCAGAAACATATCTACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF021M23+          CAGGGTTGGACGATCTGGGAGATACGGTCACCTTGGCCTGGCTGTAAACCTGATAACTTA
rJMFF050E01+          CAGGGTTGGACGATCTGGGAGATACGGTCACCTTGGCCTGGCTGTAAACCTGATAACTTA
                      ____________________________________________________________
consensus             CAGGGTTGGACGATCTGGGAGATACGGTCACCTTGGCCTGGCTGTAAACCTGATAACTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF021M23+          TGAGGACCGCTTCAATCTGTATAGAATTGAGCAAGAACTTGGAACTGAGATCAAGCAAAT
rJMFF050E01+          TGAGGACCGCTTCAATCTGTATAGAATTGAGCAAGAACTTGGAACTGAGATCAAGCAAAT
                      ____________________________________________________________
consensus             TGAGGACCGCTTCAATCTGTATAGAATTGAGCAAGAACTTGGAACTGAGATCAAGCAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF021M23+          TCCTCCACATATAGATCAGACTATATACTGCC                            
rJMFF050E01+          TCCTCCACATATAGATCAGACTATATACTGCCGATGATGTGTGATTGATAGCTATGTGGT
                      ____________________________________________________________
consensus             TCCTCCACATATAGATCAGACTATATACTGCCGATGATGTGTGATTGATAGCTATGTGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050E01+          CAATAGTGGTTACAGTGAATTGCTCAGGCCTCCTTTCACTGAAAGTACAACACTATTGAG
                      ____________________________________________________________
consensus             CAATAGTGGTTACAGTGAATTGCTCAGGCCTCCTTTCACTGAAAGTACAACACTATTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050E01+          GTGCTTTACTTGAATTTGAGGTAGAAAATGAAAAGACTGGATGCTGCATTGGTGTTTCAA
                      ____________________________________________________________
consensus             GTGCTTTACTTGAATTTGAGGTAGAAAATGAAAAGACTGGATGCTGCATTGGTGTTTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050E01+          GGTGCATCCCAAGGAAATTGTGTGTACATATATCCTAAATAGCTGCCTGGATTCACTCTA
                      ____________________________________________________________
consensus             GGTGCATCCCAAGGAAATTGTGTGTACATATATCCTAAATAGCTGCCTGGATTCACTCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050E01+          AAAAGTTCCTGAATCGAACCTTTTACTAGGTGTTGTTATGTTGCATTTGCTTCTATAAAC
                      ____________________________________________________________
consensus             AAAAGTTCCTGAATCGAACCTTTTACTAGGTGTTGTTATGTTGCATTTGCTTCTATAAAC