Contig 013850:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009K15Sequence580001653 (10)ref|XP_011091261.1|2e-75PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Sesamum indicum]726013850 (9)
JMFF014C05Sequence585001653 (10)ref|XP_004247759.1|4e-61PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Solanum lycopersicum]489013850 (9)
JMFF015M14Sequence583001653 (10)ref|XP_011091261.1|2e-74PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Sesamum indicum]701013850 (9)
JMFF018I11Sequence586001653 (10)ref|XP_011091261.1|2e-75PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Sesamum indicum]722013850 (9)
JMFF019A16Sequence583001653 (10)ref|XP_011091261.1|2e-74PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Sesamum indicum]640013850 (9)
JMFF031L06Sequence605001653 (10)ref|XP_011091261.1|4e-80PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Sesamum indicum]655013850 (9)
JMFF031N15Sequence195001653 (10)725013850 (9)
JMFF049J21Sequence629001653 (10)ref|XP_011091261.1|5e-87PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Sesamum indicum]625013850 (9)
JMSF028O24Sequence667001653 (10)ref|XP_011091262.1|2e-96PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like isoform X1 [Sesamum i667013850 (9)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF018I11+ T
rJMFF009K15+ TCNT
                      ____________________________________________________________
consensus TCNT
 
. : . : . : . : . : . :
rJMFF018I11+ AATGTTGGAGGTGGAGGACNTACGGGTCAGTCTCCAACTGAAGCTGCAGGTTATGGGAA-
rJMFF009K15+ AATGTTGGAGGTGGAGGACCTACGGGTCAGTCTCCAACTGAAGCTGCAGGTTATGGGAAC
rJMFF031N15+ GAGGTGGAGGACCTACGGGTCAGTCTCCAACTGAAGCTGCAGGTTATGGGAA-
rJMSF028O24+ AAGCTGCAGGTTATGGGAA-
rJMFF015M14+ CTCCAACTGAAGCTGCAGGTTATGGGAA-
                      ____________________________________________________________
consensus AATGTTGGAGGTGGAGGACCTACGGGTCAGTCTCCAACTGAAGCTGCAGGTTATGGGAA-
 
. : . : . : . : . : . :
rJMFF018I11+ CCAAGGTTATGGTTATGGTGGCTATGGTGGAAATGATGGATCTTATGG-AAATCCAGCTG
rJMFF031L06+ TATGGTTATGGTGGCTATGGTGGAAATGATGGATCTTATGGAAAATCCAGCNG
rJMFF019A16+ GGAAATGATGGATCTTATGG-AAATCCAGCTG
rJMFF009K15+ CCAAGGTTATGGTTATGGTGGCTATGGTGGAAATGATGGATCTTATGG-AAATCCAGCTG
rJMFF031N15+ CCAAGGTTATGGTTATGGTGGCTATGGTGGAAATGATGGATCTTATGG-AAATCCAGCTG
rJMSF028O24+ CCAAGGTTATGGTTATGGTGGCTATGGTGGAAATGATGGATCTTATGG-AAATCCAGCTG
rJMFF015M14+ CCAAGGTTATGGTTATGGTGGCTATGGTGGAAATGATGGATCTTATGG-AAATCCAGCTG
                      ____________________________________________________________
consensus CCAAGGTTATGGTTATGGTGGCTATGGTGGAAATGATGGATCTTATGG-AAATCCAGCTG
 
. : . : . : . : . : . :
rJMFF018I11+ CTTAT-GGGGCTGTAGGACGTTCTGCTGGTGGTCCAA-GTAGCAATTCCCCT--GCTGGT
rJMFF031L06+ CTTAT-GGGGCNGTAGGACGTTCTGNTGGTGGTCCAA-GTAGCAATTCCCCT--GCTGGT
rJMFF019A16+ CNTATGGGGGCTGTAGGACGTTCTGCTGGTGNTCCAAGGTAGCAATTCCCCCTGCCTGGT
rJMFF014C05+ CTGGT
rJMFF009K15+ CTTAT-GGGGCTGTAGGACGTTCTGCTGGTGGTCCAA-GTAGCAATTCCCCT--GCTGGT
rJMFF031N15+ CTTAT-GGGGCTGTAGGACGTTCTGCTGGTGGTCCAA-GTAGCAATTCCCCT--GCTGGT
rJMSF028O24+ CTTAT-GGGGCTGTAGGACGTTCTGCTGGTGGTCCAA-GTAGCAATTCCCCT--GCTGGT
rJMFF015M14+ CTTAT-GGGGCTGTAGGACGTTCTGCTGGTGGTCCAA-GTAGCAATTCCCCT--GCTGGT
rJMFF049J21+ TCCAA-GTAGCAATTCCCCT--GCTGGT
                      ____________________________________________________________
consensus CTTAT-GGGGCTGTAGGACGTTCTGCTGGTGGTCCAA-GTAGCAATTCCCCT--GCTGGT
 
. : . : . : . : . : . :
rJMFF018I11+ GGTGGTGGTACAGGAGAGCTGCAAGCTGGTGCTGGTGGTTATGGGGCGTATGGTGATGCC
rJMFF031L06+ GGTGGTGGTACAGGAGAGCTGCAAGCTGGTGCTGGTGGTTATGGGGCGTATGGTGATGCC
rJMFF019A16+ GGTGGTGGTACAGGAGAGCTGCAAGCTGNTGCTGGTGGTTATGGGGCGTATGGTGATGCC
rJMFF014C05+ GGTGGTGGTACAGGAGAGCTGCAAGCTGGTGCTGGTGGNTATGGGGCGTATGGNNATGCC
rJMFF009K15+ GGTGGTGGTACAGGAGAGCTGCAAGCTGGTGCTGGTGGTTATGGGGCGTATGGTGATGCC
rJMFF031N15+ GGTGGTGGTACAGGAGAGCTGCAAGCTGGTGCTGGTGGTTATGGGGCGTATGGTGATGCC
rJMSF028O24+ GGTGGTGGTACAGGAGAGCTGCAAGCTGGTGCTGGTGGTTATGGGGCGTATGGTGATGCC
rJMFF015M14+ GGTGGTGGTACAGGAGAGCTGCAAGCTGGTGCTGGTGGTTATGGGGCGTATGGTGATGCC
rJMFF049J21+ GGTGGTGGTACAGGAGAGCTGCAAGCTGGTGCTGGTGGTTATGGGGCGTATGGTGATGCC
                      ____________________________________________________________
consensus GGTGGTGGTACAGGAGAGCTGCAAGCTGGTGCTGGTGGTTATGGGGCGTATGGTGATGCC
 
. : . : . : . : . : . :
rJMFF018I11+ AGTGGAAATTCTGGATATGGAAATGCAGGATGGAGGTCTGATGCATCACAGCCTTCTGGA
rJMFF031L06+ AGTNGAAATTCTGGATATGGAAATGCAGGATGGAGGTCTGNTGCATCACAGCCTTCTGGG
rJMFF019A16+ AGTGGAAATTCTGGATATGGAAATGCAGGATGGAGGTCTGATGCATCACAGCCTTCTGGG
rJMFF014C05+ AGNNGAAATTNTGGATANGGAAATGCAGGATGGAGGTNNGATGCATCNCANCCTTCTGGG
rJMFF009K15+ AGTGGAAATTCTGGATATGGAAATGCAGGATGGAGGTCTGATGCATCACAGCCTTCTGGG
rJMFF031N15+ AGTGGAAATTCTGGATATGGAAATGCAGGATGGAGGTCTGATGCATCACAGCCTTCTGGG
rJMSF028O24+ AGTGGAAATTCTGGATATGGAAATGCAGGATGGAGGTCTGATGCATCACAGCCTTCTGGG
rJMFF015M14+ AGTGGAAATTCTGGATATGGAAATGCAGGATGGAGGTCTGATGCATCACAGCCTTCTGGG
rJMFF049J21+ AGTGGAAATTCTGGATATGGAAATGCAGGATGGAGGTCTGATGCATCACAGCCTTCTGGA
                      ____________________________________________________________
consensus AGTGGAAATTCTGGATATGGAAATGCAGGATGGAGGTCTGATGCATCACAGCCTTCTGGG
 
. : . : . : . : . : . :
rJMFF018I11+ AATTATGGATCAAATGGCAGCCAAGTTAGCTATGGAGGTGGATATGGTGGTGCGCCAGGT
rJMFF031L06+ AATTATGGATCAAATGGCAGCCAAGNTAGCTATGGAGGTGGATATGGTGGTGCGCCAGGT
rJMFF019A16+ AATTATGGATCAAATGGCAGCCAAGTTAGCTATGGAGGTGGATATGGTGGTGCGCCAGGT
rJMFF014C05+ AATTATGGATCAAATGGCAGCCAANNTAGCTATGGAGGTGGATATGGTGGTGCGCCAGGT
rJMFF009K15+ AATTATGGATCAAATGGCAGCCAAGTTAGCTATGGAGGTGGATATGGTGGTGCGCCAGGT
rJMFF031N15+ AATTATGGATCAAATGGCAGCCAAGTTAGCTATGGAGGTGGATATGGTGGTGCGCCAGGT
rJMSF028O24+ AATTATGGATCAAATGGCAGCCAAGTTAGCTATGGAGGTGGATATGGTGGTGCGCCAGGT
rJMFF015M14+ AATTATGGATCAAATGGCAGCCAAGTTAGCTATGGAGGTGGATATGGTGGTGCGCCAGGT
rJMFF049J21+ AATTATGGATCAAATGGCAGCCAAGTTAGCTATGGAGGTGGATATGGTGGTGCGCCAGGT
                      ____________________________________________________________
consensus AATTATGGATCAAATGGCAGCCAAGTTAGCTATGGAGGTGGATATGGTGGTGCGCCAGGT
 
. : . : . : . : . : . :
rJMFF018I11+ CGGCAAACTCAACAACAGTGATCACAAACACAATCTCATGCAACTCATTTATTTTCTGGA
rJMFF031L06+ CGGCAAACTCAACAACAGTGATCACAAACACAATCTCATGCAACTCATTTATTTTCTGGA
rJMFF019A16+ CGGCAAACTCAACAACAGTGATCACAAACACAATCTCATGCAACTCATTTATTTTCTGGA
rJMFF014C05+ CGGCAAACTCAACAACAGTGATCNCAAACACAATCTCATGCAANTCATTTATTTTCTGGA
rJMFF009K15+ CGGCAAACTCAACAACAGTGATCACAAACACAATCTCATGCAACTCATTTATTTTCTGGA
rJMFF031N15+ CGGCAAACTCAACAACAGTGATCACAAACACAATCTCATGCAACTCATTTATTTTCTGGA
rJMSF028O24+ CGGCAAACTCAACAACAGTGATCACAAACACAATCTCATGCAACTCATTTATTTTCTGGA
rJMFF015M14+ CGGCAAACTCAACAACAGTGATCACAAACACAATCTCATGCAACTCATTTATTTTCTGGA
rJMFF049J21+ CGGCAAACTCAACAACAGTGATCACAAACACAATCTCATGCAACTCATTTATTTTCTGGA
                      ____________________________________________________________
consensus CGGCAAACTCAACAACAGTGATCACAAACACAATCTCATGCAACTCATTTATTTTCTGGA
 
. : . : . : . : . : . :
rJMFF018I11+ AGTCTACTCATCATCGATCTTGTGTTTCATGAGCTGAGAGGGAGGGAGGCTGTTTCAATA
rJMFF031L06+ AGTNTANTCATCATCGATCTTGTGTTTCATGAGCTGAGAGGGAGGGAGGCTGTTTCAATA
rJMFF019A16+ AGTCTACTCATCATCGATCTTGTGTTTCATGAGCTGAGAGGGAGGGAGGCTGTTTCAATA
rJMFF014C05+ AGTNTANTCATCATCGATCTTGTGTTTCATGAGCTGAGAGGGAGGGAGGCTGTTTCAATN
rJMFF009K15+ AGTCTACTCATCATCGATCTTGTGTTTCATGAGCTGAGAGGGAGGGAGGCTGTTTCAATA
rJMFF031N15+ AGTCTACTCATCATCGATCTTGTGTTTCATGAGCTGAGAGGGAGGGAGGCTGTTTCAATA
rJMSF028O24+ AGTCTACTCATCATCGATCTTGTGTTTCATGAGCTGAGAGGGAGGGAGGCTGTTTCAATA
rJMFF015M14+ AGTCTACTCATCATCGATCTTGTGTTTCATGAGCTGAGAGGGAGGGAGGCTGTTTCAATA
rJMFF049J21+ AGTCTACTCATCATCGATCTTGTGTTTCATGAGCTGAGAGGGAGGGAGGCTGTTTCAATA
                      ____________________________________________________________
consensus AGTCTACTCATCATCGATCTTGTGTTTCATGAGCTGAGAGGGAGGGAGGCTGTTTCAATA
 
. : . : . : . : . : . :
rJMFF018I11+ CATCATACCTGCGTAATGGGACTGGTTGGATTGCTTGAATCCCAGTAGTTTGTTATTCTA
rJMFF031L06+ CATCATNCNTGCGTAATGGGACTGGTTGGATTGCTTGAATCCCAGTAGTTTGTTATTCTA
rJMFF019A16+ CATCATACCTGCGTAATGGGACTGGTTGGATTGCTTGAATCCCAGTAGTTTGTTATTCTA
rJMFF014C05+ CATCATNCNTGCGTAATGGGNNTGGTTGGATTGCTTGAATCCCAGTAGTTNGTTATTNTN
rJMFF009K15+ CATCATACCTGCGTAATGGGACTGGTTGGATTGCTTGAATCCCAGTAGTTTGTTATTCTA
rJMFF031N15+ CATCATACCTGCGTAATGGGACTGGTTGGATTGCTTGAATCCCAGTAGTTTGTTATTCTA
rJMSF028O24+ CATCATACCTGCGTAATGGGACTGGTTGGATTGCTTGAATCCCAGTAGTTTGTTATTCTA
rJMFF015M14+ CATCATACCTGCGTAATGGGACTGGTTGGATTGCTTGAATCCCAGTAGTTTGTTATTCTA
rJMFF049J21+ CATCATACCTGCGTAATGGGACTGGTTGGATTGCTTGAATCCCAGTAGTTTGTTATTCTA
                      ____________________________________________________________
consensus CATCATACCTGCGTAATGGGACTGGTTGGATTGCTTGAATCCCAGTAGTTTGTTATTCTA
 
. : . : . : . : . : . :
rJMFF018I11+ CAATAAGTAGCATTATACAGTAGACGTAACTTATTATTTGCTGTTTAAGTGTAGTTTTTA
rJMFF031L06+ CAATAAGTAGCATTATACAGTNGACGTAACTTATTATTTGCTGTTTAAGTGTAGTTANTA
rJMFF019A16+ CAATAAGTAGCATTATACAGTAGACGTAACTTATTATTTGCTGTTTAAGTGTAGTTTTTA
rJMFF014C05+ CAATAAGTAGCATTNTACAGTNGACGTAACTTATTATTTGCTGTTTAAGTGTAGTTNNTA
rJMFF009K15+ CAATAAGTAGCATTATACAGTAGACGTAACTTATTATTTGCTGTTTAAGTGTAGTTTTTA
rJMFF031N15+ CAATAAGTAGCATTATACAGTAGACGTAACTTATTATTTGCTGTTTAAGTGTAGTTTTTA
rJMSF028O24+ CAATAAGTAGCATTATACAGTAGACGTAACTTATTATTTGCTGTTTAAGTGTAGTTTTTA
rJMFF015M14+ CAATAAGTAGCATTATACAGTAGACGTAACTTATTATTTGCTGTTTAAGTGTAGTTTTTA
rJMFF049J21+ CAATAAGTAGCATTATACAGTAGACGTAACTTATTATTTGCTGTTTAAGTGTAGTTTTTA
                      ____________________________________________________________
consensus CAATAAGTAGCATTATACAGTAGACGTAACTTATTATTTGCTGTTTAAGTGTAGTTTTTA
 
. : . : . : . : . : . :
rJMFF018I11+ TTTTGGAAATTTGGCGTGCTTATTATTATTATTATCTCTTCCTTGGCTAATTTGGTGCAT
rJMFF031L06+ TTTTGGAAATNNGGCGTGCTTATTATTATTATTATCTCTTCCTTGGCTAATTTGGTGCAT
rJMFF019A16+ TTTTGGAAATTTGGCGTGCTTATTATTATTATTATCTCTTCCTTGGCTAATTTGGTGCAT
rJMFF014C05+ TTTTGGAAATNNGGCGTGCTTATTATTATTATTATCTCTTCCTTGGCTAATTNGGTGCAT
rJMFF009K15+ TTTTGGAAATTTGGCGTGCTTATTATTATTATTATCTCTTCCTTGGCTAATTTGGTGCAT
rJMFF031N15+ TTTTGGAAATTTGGCGTGCTTATTATTATTATTATCTCTTCCTTGGCTAATTTGGTGCAT
rJMSF028O24+ TTTTGGAAATTTGGCGTGCTTATTATTATTATTATCTCTTCCTTGGCTAATTTGGTGCAT
rJMFF015M14+ TTTTGGAAATTTGGCGTGCTTATTATTATTATTATCTCTTCCTTGGCTAATTTGGTGCAT
rJMFF049J21+ TTTTGGAAATTTGGCGTGCTTATTATTATTATTATCTCTTCCTTGGCTAATTTGGTGCAT
                      ____________________________________________________________
consensus TTTTGGAAATTTGGCGTGCTTATTATTATTATTATCTCTTCCTTGGCTAATTTGGTGCAT
 
. : . : . : . : . : . :
rJMFF018I11+ GGCTTCTCTCAGTCTGCACTGATATAGTTTGTGCTGAACTTATGTCTGCTTGATTTCTGC
rJMFF031L06+ GNCTTCTCTCAGTCTGCACTGATATAGNTNGTGCTGAACTNATGTCTGCNTGATTTCTGC
rJMFF019A16+ GGCTTCTCTCAGTCTGCACTGATATAGTTTGTGCTGAACTTATGTCTGCTTGATTTCTGC
rJMFF014C05+ GG
rJMFF009K15+ GGCTTCTCTCAGTCTGCACTGATATAGTTTGTGCTGAACTTATGTCTGCTTGATTTCTGC
rJMFF031N15+ GGCTTCTCTCAGTCTGCACTGATATAGTTTGTGCTGAACTTATGTCTGCTTGATTTCTGC
rJMSF028O24+ GGCTTCTCTCAGTCTGCACTGATATAGTTTGTGCTGAACTTATGTCTGCT
rJMFF015M14+ GGCTTCTCTCAGTCTGCACTGATATAGTTTGTGCTGAACTTATGTCTGCTTGATTTCTGC
rJMFF049J21+ GGCTTCTCTCAGTCTGCACTGATATAGTTTGTGCTGAACTTATGTCTGCTTGATTTCTGC
                      ____________________________________________________________
consensus GGCTTCTCTCAGTCTGCACTGATATAGTTTGTGCTGAACTTATGTCTGCTTGATTTCTGC
 
. : . : . : . : . : . :
rJMFF018I11+ AAGTCCT
rJMFF031L06+ AAGTCC
rJMFF019A16+ AAGTC
rJMFF009K15+ AAGTCCT
rJMFF031N15+ AAGTCCTTTGGTAA
rJMFF015M14+ AAGTCCTTTGGTAA
rJMFF049J21+ AAGTCCTTTGGTAATGAAGTTAGTATTGACAGCAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus AAGTCCTTTGGTAATGAAGTTAGTATTGACAGCAAAAAAAAAAAAAAAACTCTCCAGGGT