| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF047H22 | Sequence | 641 | 007843 (4) | emb|CDP02679.1| | 2e-11 | unnamed protein product [Coffea canephora] | 615 | 013839 (4) | |||
| JMSF011C19 | Sequence | 365 | 007843 (4) | emb|CDP02679.1| | 6e-05 | unnamed protein product [Coffea canephora] | 801 | 013839 (4) | ref|XP_009606293.1| | 3e-12 | PREDICTED: transcription factor GTE2-like [Nicotiana tomentosiformis] |
| JMSF018A01 | Sequence | 516 | 007843 (4) | emb|CDP02679.1| | 3e-05 | unnamed protein product [Coffea canephora] | 763 | 013839 (4) | ref|XP_009606293.1| | 1e-07 | PREDICTED: transcription factor GTE2-like [Nicotiana tomentosiformis] |
| JMSF018A05 | Sequence | 303 | 007843 (4) | 762 | 013839 (4) | ref|XP_009606293.1| | 2e-09 | PREDICTED: transcription factor GTE2-like [Nicotiana tomentosiformis] | |||
This contig is upended
. : . : . : . : . : . :
rJMSF011C19+ AA
____________________________________________________________
consensus AA
. : . : . : . : . : . :
rJMSF011C19+ CTGAGGGTGATGAGATTGAACCTGACATTGAGGCACCTGACAATGAACCACTATGGGAAC
rJMSF018A05+ CAATGAAACACTATGGGAAC
rJMSF018A01+ CTATGGGAAC
____________________________________________________________
consensus CTGAGGGTGATGAGATTGAACCTGACATTGAGGCACCTGACAATGAACCACTATGGGAAC
. : . : . : . : . : . :
rJMSF011C19+ TGGATAGGTTTGTGGGCTATCAGAAAAAGGCTTTAAGCAAGATGATGAGGCAAGGCCTCA
rJMSF018A05+ TGGATAGGTTTGTGGGCTATCAGAAAAAGGCTTTAAGCAAGATGATGAGGCAAGGCCTCA
rJMSF018A01+ TGGATAGGTTTGTGGGCTATCAGAAAAAGGCTTTAAGCAAGATGATGAGGCAAGGCCTCA
____________________________________________________________
consensus TGGATAGGTTTGTGGGCTATCAGAAAAAGGCTTTAAGCAAGATGATGAGGCAAGGCCTCA
. : . : . : . : . : . :
rJMSF011C19+ TTCCAGGTGCTTCCCAAGAGAATATCATTGCAGAAGCTCTAGGAGAGAATGTCAGCAATT
rJMSF018A05+ TTCCAGGTGCTTCCCAAGAGAATATCATTGCAGAAGCTCTAGGAGAGAATGTCAGCAATT
rJMSF018A01+ TTCCAGGTGCTTCCCAAGAGAATATCATTGCAGAAGCTCTAGGAGAGAATGTCAGCAATT
____________________________________________________________
consensus TTCCAGGTGCTTCCCAAGAGAATATCATTGCAGAAGCTCTAGGAGAGAATGTCAGCAATT
. : . : . : . : . : . :
rJMSF011C19+ TCCCAGGAAATGTGGCTACACCAAACCCTGTGGAACATACAGACAAGAAAGATGAAGCTG
rJMSF018A05+ TCCCAGGAAATGTGGCTACACCAAACCCTGTGGAACATACAGACAAGAAAGATGAAGCTG
rJMSF018A01+ TCCCAGGAAATGTGGCTACACCAAACCCTGTGGAACATACAGACAAGAAAGATGAAGCTG
rJMFF047H22+ AAGAAAGATGAAGCTG
____________________________________________________________
consensus TCCCAGGAAATGTGGCTACACCAAACCCTGTGGAACATACAGACAAGAAAGATGAAGCTG
. : . : . : . : . : . :
rJMSF011C19+ ACGAAGAGGATGTTGATATTGGGGAAGAAAGTCCAATCAATAACTTCTCCCCAGTGAAGA
rJMSF018A05+ ACGAAGAGGATGTTGATATTGGGGAAGAAAGTCCAATCAATAACTTCTCCCCAGTGAAGA
rJMSF018A01+ ACGAAGAGGATGTTGATATTGGGGAAGAAAGTCCAATCAATAACTTCTCCCCAGTGAAGA
rJMFF047H22+ NCGAAGAGGATGTGATATTTGGGGAAGAAAGTCCAATCAATAACTTCTCCCCAGTGAAGA
____________________________________________________________
consensus ACGAAGAGGATGTTGATATTGGGGAAGAAAGTCCAATCAATAACTTCTCCCCAGTGAAGA
. : . : . : . : . : . :
rJMSF011C19+ TTGAGAAGGATGTGAGTAGATCCAGCAGCTCAAGCTCCAGCAGTGACTCTTCTTCCAGTG
rJMSF018A05+ TTGAGAAGGATGTGAGTAGATCCAGCAGCTCAAGCTCCAGCAGTGACTCTTCTTCCAGTG
rJMSF018A01+ TTGAGAAGGATGTGAGTAGATCCAGCAGCTCAAGCTCCAGCAGTGACTCTTCTTCCAGTG
rJMFF047H22+ TTGAGAAGGATGTGAGTAGATCCAGCAGCTCAAGCTCCAGCAGTGACTCTTCTTCCAGTG
____________________________________________________________
consensus TTGAGAAGGATGTGAGTAGATCCAGCAGCTCAAGCTCCAGCAGTGACTCTTCTTCCAGTG
. : . : . : . : . : . :
rJMSF011C19+ ATTCAGATTCAGGAAGCTCTTGTGGGAGTGACTCTGATGAGGATAGTGTACAGTTGCAAG
rJMSF018A05+ ATTCAGATTCAGGAAGCTCTTGTGGGAGTGACTCTGATGAGGATAGTGTACAGTTGCAAG
rJMSF018A01+ ATTCAGATTCAGGAAGCTCTTGTGGGAGTGACTCTGATGAGGATAGTGTACAGTTGCAAG
rJMFF047H22+ ATTCAGATTCAGGAAGCTCTTGTGGGAGTGACTCTGATGAGGATAGTGTACAGTTGCAAG
____________________________________________________________
consensus ATTCAGATTCAGGAAGCTCTTGTGGGAGTGACTCTGATGAGGATAGTGTACAGTTGCAAG
. : . : . : . : . : . :
rJMSF011C19+ AGACCTCTAAAATGTGATTCTTGATGGGTTTAGGGCAGACAGGGTTTATGGAGGCTTTCA
rJMSF018A05+ AGACCTCTAAAATGTGATTCTTGATGGGTTTAGGGCAGACAGGGTTTATGGAGGCTTTCA
rJMSF018A01+ AGACCTCTAAAATGTGATTCTTGATGGGTTTAGGGCAGACAGGGTTTATGGAGGCTTTCA
rJMFF047H22+ AGACCTCTAAAATGTGATTCTTGATGGGTTTAGGGCAGACAGGGTTTATGGAGGCTTTCA
____________________________________________________________
consensus AGACCTCTAAAATGTGATTCTTGATGGGTTTAGGGCAGACAGGGTTTATGGAGGCTTTCA
. : . : . : . : . : . :
rJMSF011C19+ TTCTGTTCTGAGTTATGTGATTTGCAGATTTGGTATGGAAGGTGAAGAATTGAAGCAGTT
rJMSF018A05+ TTCTGTTCTGAGTTATGTGATTTGCAGATTTGGTATGGAAGGTGAAGAATTGAAGCAGTT
rJMSF018A01+ TTCTGTTCTGAGTTATGTGATTTGCAGATTTGGTATGGAAGGTGAAGAATTGAAGCAGTT
rJMFF047H22+ TTCTGTTCTGAGTTATGTGATTTGCAGATTTGGTATGGAAGGTGAAGAATTGAAGCAGTT
____________________________________________________________
consensus TTCTGTTCTGAGTTATGTGATTTGCAGATTTGGTATGGAAGGTGAAGAATTGAAGCAGTT
. : . : . : . : . : . :
rJMSF011C19+ CTATGCATGGAGGCTTTTAAAAAAGGTGTAGTATTTGTAAAGAGTGACCAAATTTGGGGA
rJMSF018A05+ CTATGCATGGAGGCTTTTAAAAAAGGTGTAGTATTTGTAAAGAGTGACCAAATTTAGGGA
rJMSF018A01+ CTATGCATGGAGGCTTTTAAAAAAGGTGTAGTATTTGTAAAGAGTGACCAAATTTAGGGA
rJMFF047H22+ CTATGCATGGAGGCTTTTAAAAAAGGTGTAGTATTTGTAAAGAGTGACCAAATTTAGGGA
____________________________________________________________
consensus CTATGCATGGAGGCTTTTAAAAAAGGTGTAGTATTTGTAAAGAGTGACCAAATTTAGGGA
. : . : . : . : . : . :
rJMSF011C19+ GTAACTGGAGGTAGGTAACTGAGATGGGTTTTTTGTTAGCTATGGCAGAGTAGGATGTTA
rJMSF018A05+ GTAACTGGAGGTAGGTAACTGAGATGGGTTTTTTGTTAGCTATGGCAGAGTAGGATGTTA
rJMSF018A01+ GTAACTGGAGGTAGGTAACTGAGATGGGTTTTTTGTTAGCTATGGCAGAGTAGGATGTTA
rJMFF047H22+ GTAACTGGAGGTAGGTAACTGAGATGGGTTTTTTGTTAGCTATGGCAGAGTAGGATGTTA
____________________________________________________________
consensus GTAACTGGAGGTAGGTAACTGAGATGGGTTTTTTGTTAGCTATGGCAGAGTAGGATGTTA
. : . : . : . : . : . :
rJMSF011C19+ GTGAGGAACTTGCAGAAGAGTTCCTATAGGTATGGTCAGTAAGTAGTTGGGACAAATTAT
rJMSF018A05+ GTGAGGAACTTGCAGAAGAGTTCCTATAGGTATGGTCAGTAAGTAGTTGGGACAAATTAT
rJMSF018A01+ GTGAGGAACTTGCAGAAGAGTTCCTATAGGTATGGTCAGTAAGTAGTTGGGACAAATTAT
rJMFF047H22+ GTGAGGAACTTGCAGAAGAGTTCCTATAGGTATGGTCAGTAAGTAGTTGGGACAAATTAT
____________________________________________________________
consensus GTGAGGAACTTGCAGAAGAGTTCCTATAGGTATGGTCAGTAAGTAGTTGGGACAAATTAT
. : . : . : . : . : . :
rJMSF011C19+ TTTGTTTGTTTATAAAAAATCATAGTGTTTAGGAACATAGAAGTAATGTGTA-CAGGATG
rJMSF018A05+ TTTGTTTGTTTATAAAAAATCATAGTGTTTAGGAACATAGAAGTAATGTGTA-CAGGATG
rJMSF018A01+ TTTGTTTGTTTATAAAAAATCATAGTGTTTAGGAACATAGAAGTAATGTGTACCAGGATG
rJMFF047H22+ TTTGTTTGTTTATAAAAAATCATAGTGTTTAGGAACATAGAAGTAATGTGTA-CAGGATG
____________________________________________________________
consensus TTTGTTTGTTTATAAAAAATCATAGTGTTTAGGAACATAGAAGTAATGTGTA-CAGGATG
. : . : . : . : . : . :
rJMSF011C19+ AAATGGCTGGCTGGCTGGCT
rJMSF018A05+ AAATGGCTGGCTGGCTGGCT
rJMSF018A01+ AAATGGCTGGCTGGCTGGCTTGTAT
rJMFF047H22+ AAATGGCTGGCTGGCTGGCTTGTATTAGCCCAAAATGAATGAAGGCAACTAGCATTTTCT
____________________________________________________________
consensus AAATGGCTGGCTGGCTGGCTTGTATTAGCCCAAAATGAATGAAGGCAACTAGCATTTTCT