clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF002H22 | Sequence | 447 | 002072 (10) | emb|CDP09038.1| | 1e-23 | unnamed protein product [Coffea canephora] | 731 | 013825 (10) | emb|CDP09038.1| | 1e-45 | unnamed protein product [Coffea canephora] |
JMFF003E15 | Sequence | 578 | 002072 (10) | emb|CDP09038.1| | 1e-38 | unnamed protein product [Coffea canephora] | 727 | 013825 (10) | emb|CDP09038.1| | 1e-45 | unnamed protein product [Coffea canephora] |
JMFF005M18 | Sequence | 410 | 002072 (10) | 726 | 013825 (10) | emb|CDP09038.1| | 7e-45 | unnamed protein product [Coffea canephora] | |||
JMFF014H07 | Sequence | 632 | 013825 (10) | emb|CDP09038.1| | 4e-33 | unnamed protein product [Coffea canephora] | |||||
JMFF045O19 | Sequence | 614 | 002072 (10) | emb|CDP09038.1| | 6e-35 | unnamed protein product [Coffea canephora] | 624 | 013825 (10) | emb|CDP09038.1| | 8e-22 | unnamed protein product [Coffea canephora] |
JMSF002N15 | Sequence | 114 | 002072 (10) | 718 | 013825 (10) | emb|CDP09038.1| | 1e-51 | unnamed protein product [Coffea canephora] | |||
JMSF004H22 | Sequence | 243 | 002072 (10) | 426 | 013825 (10) | emb|CDP09038.1| | 7e-12 | unnamed protein product [Coffea canephora] | |||
JMSF007G19 | Sequence | 110 | 002072 (10) | 745 | 013825 (10) | emb|CDP09038.1| | 1e-45 | unnamed protein product [Coffea canephora] | |||
JMSF046A01 | Sequence | 117 | 002072 (10) | 747 | 013825 (10) | emb|CDP09038.1| | 2e-46 | unnamed protein product [Coffea canephora] | |||
JMSF048C23 | Sequence | 112 | 002072 (10) | 683 | 013825 (10) | emb|CDP09038.1| | 4e-34 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF002N15+ TGGGCCTCCTA
____________________________________________________________
consensus TGGGCCTCCTA
. : . : . : . : . : . :
rJMSF002N15+ GGTTTCTGTTCACAATCAAAGAGGAAACCAAGGAGGATTTGGAGTCTGAGGATGGGAAAT
rJMFF002H22+ TCACAATCAAAGAGGAAACCAAGGAGGATTTGGAGTCTGAGGATGGGAAAT
rJMFF003E15+ CACAATCAAAGAGGAAACCAAGGAGGATTTGGAGTCTGAGGATGGGAAAT
rJMFF005M18+ CAATCAAAGAGGAAACCAAGGAGGATTTGGAGTCTGAGGATGGGAAAT
rJMSF007G19+ TCACAATCAAAGAGGAAACCAAGGAGGATTTGGAGTCTGAGGATGGGAAAT
rJMSF046A01+ TCACAATCAAAGAGGAAACCAAGGAGGATTTGGAGTCTGAGGATGGGAAAT
____________________________________________________________
consensus GGTTTCTGTTCACAATCAAAGAGGAAACCAAGGAGGATTTGGAGTCTGAGGATGGGAAAT
. : . : . : . : . : . :
rJMSF002N15+ CTAGGAAGGGTTCCAGAACTAGGAGCTTGAGCCATGACCTTATGATTGGTGTTGAAACAC
rJMFF002H22+ CTAGGAAGGGTTCCAGAACTAGGAGCTTGAGCCATGACCTTATGATTGGTGTTGAAACAC
rJMFF003E15+ CTAGGAAGGGTTCCAGAACTAGGAGCTTGAGCCATGACCTTATGATTGGTGTTGAAACAC
rJMFF005M18+ CTAGGAAGGGTTCCAGAACTAGGAGCTTGAGCCATGACCTTATGATTGGTGTTGAAACAC
rJMSF007G19+ CTAGGAAGGGTTCCAGAACTAGGAGCTTGAGCCATGACCTTATGATTGGTGTTGAAACAC
rJMSF048C23+ TCCAGAACTAGGAGCTTGAGCCATGACCTTATGATTGGTGTTGAAACAC
rJMSF046A01+ CTAGGAAGGGTTCCAGAACTAGGAGCTTGAGCCATGACCTTATGATTGGTGTTGAAACAC
____________________________________________________________
consensus CTAGGAAGGGTTCCAGAACTAGGAGCTTGAGCCATGACCTTATGATTGGTGTTGAAACAC
. : . : . : . : . : . :
rJMSF002N15+ CATTGCTTTCCCCCCTGTCTTCACCTCCATTAAAGCCTCTGGCTTTGGAGTCTTACAGCC
rJMFF002H22+ CATTGCTTTCCCCCCTGTCTTCACCTCCATTAAAGCCTCTGGCTTTGGAGTCTTACAGCC
rJMFF003E15+ CATTGCTTTCCCCCCTGTCTTCACCTCCATTAAAGCCTCTGGCTTTGGAGTCTTACAGCC
rJMFF005M18+ CATTGCTTTCCCCCCTGTCTTCACCTCCATTAAAGCCTCTGGCTTTGGAGTCTTACAGCC
rJMSF007G19+ CATTGCTTTCCCCCCTGTCTTCACCTCCATTAAAGCCTCTGGCTTTGGAGTCTTACAGCC
rJMSF048C23+ CATTGCTTTCCCCCCTGTCTTCACCTCCATTAAAGCCTCTGGCTTTGGAGTCTTACAGCC
rJMSF046A01+ CATTGCTTTCCCCCCTGTCTTCACCTCCATTAAAGCCTCTGGCTTTGGAGTCTTACAGCC
rJMFF014H07+ CTTCACCTCCATTAAAGCCTCTGGCTTTGGAGTCTTACAGCC
____________________________________________________________
consensus CATTGCTTTCCCCCCTGTCTTCACCTCCATTAAAGCCTCTGGCTTTGGAGTCTTACAGCC
. : . : . : . : . : . :
rJMSF002N15+ ACCATGGGCACTTCAACCCTCTGTTTGAGTCCTCAACAGAAGCAGCCCTGAACAGGATGA
rJMFF002H22+ ACCATGGGCACTTCAACCCTCTGTTTGAGTCCTCAACAGAAGCAGCCCTGAACAGGATGA
rJMFF003E15+ ACCATGGGCACTTCAACCCTCTGTTTGAGTCCTCAACAGAAGCAGCCCTGAACAGGATGA
rJMFF005M18+ ACCATGGGCACTTCAACCCTCTGTTTGAGTCCTCAACAGAAGCAGCCCTGAACAGGATGA
rJMSF007G19+ ACCATGGGCACTTCAACCCTCTGTTTGAGTCCTCAACAGAAGCAGCCCTGAACAGGATGA
rJMSF048C23+ ACCATGGGCACTTCAACCCTCTGTTTGAGTCCTCAACAGAAGCAGCCCTGAACAGGATGA
rJMSF046A01+ ACCATGGGCACTTCAACCCTCTGTTTGAGTCCTCAACAGAAGCAGCCCTGAACAGGATGA
rJMFF014H07+ ACCATGGGCACTTCAACCCTCTGTTTGAGTCCTCAACAGAAGCAGCCCTGAACAGGATGA
rJMFF045O19+ CAGAAGCAGCCCTGAACAGGATGA
____________________________________________________________
consensus ACCATGGGCACTTCAACCCTCTGTTTGAGTCCTCAACAGAAGCAGCCCTGAACAGGATGA
. : . : . : . : . : . :
rJMSF002N15+ GATCCTCTCCTCCTCCCAAGCTGAAGTTCCTGAGAGATGCTGAGGAGAAGCTGATTAAGA
rJMFF002H22+ GATCCTCTCCTCCTCCCAAGCTGAAGTTCCTGAGAGATGCTGAGGAGAAGCTGATTAAGA
rJMFF003E15+ GATCCTCTCCTCCTCCCAAGCTGAAGTTCCTGAGAGATGCTGAGGAGAAGCTGATTAAGA
rJMFF005M18+ GATCCTCTCCTCCTCCCAAGCTGAAGTTCCTGAGAGATGCTGAGGAGAAGCTGATTAAGA
rJMSF004H22+ CTGAGAGATGCTGAGGAGAAGCTGATTAAGA
rJMSF007G19+ GATCCTCTCCTCCTCCCAAGCTGAAGTTCCTGAGAGATGCTGAGGAGAAGCTGATTAAGA
rJMSF048C23+ GATCCTCTCCTCCTCCCAAGCTGAAGTTCCTGAGAGATGCTGAGGAGAAGCTGATTAAGA
rJMSF046A01+ GATCCTCTCCTCCTCCCAAGCTGAAGTTCCTGAGAGATGCTGAGGAGAAGCTGATTAAGA
rJMFF014H07+ GATCCTCTCCTCCTCCCAAGCTGAAGTTCCTGAGAGATGCTGAGGAGAAGCTGATTAAGA
rJMFF045O19+ GATCCTCTCCTCCTCCCAAGCTGAAGTTCCTGAGAGATGCTGAGGAGAAGCTGATTAAGA
____________________________________________________________
consensus GATCCTCTCCTCCTCCCAAGCTGAAGTTCCTGAGAGATGCTGAGGAGAAGCTGATTAAGA
. : . : . : . : . : . :
rJMSF002N15+ GGCTGGTTCAAGAAGCTGAGAAAAGGGCCCTCAGGAATGGTGGCTCAGTCCAAGATTCTG
rJMFF002H22+ GGCTGGTTCAAGAAGCTGAGAAAAGGGCCCTCAGGAATGGTGGCTCAGTCCAAGATTCTG
rJMFF003E15+ GGCTGGTTCAAGAAGCTGAGAAAAGGGCCCTCAGGAATGGTGGCTCAGTCCAAGATTCTG
rJMFF005M18+ GGCTGGTTCAAGAAGCTGAGAAAAGGGCCCTCAGGAATGGTGGCTCAGTCCAAGATTCTG
rJMSF004H22+ GGCTGGTTCAAGAAGCTGAGAAAAGGGCCCTCAGGAATGGTGGNTCAGTCCAAGATTCTG
rJMSF007G19+ GGCTGGTTCAAGAAGCTGAGAAAAGGGCCCTCAGGAATGGTGGCTCAGTCCAAGATTCTG
rJMSF048C23+ GGCTGGTTCAAGAAGCTGAGAAAAGGGCCCTCAGGAATGGTGGCTCAGTCCAAGATTCTG
rJMSF046A01+ GGCTGGTTCAAGAAGCTGAGAAAAGGGCCCTCAGGAATGGTGGCTCAGTCCAAGATTCTG
rJMFF014H07+ GGCTGGTTCAAGAAGCTGAGAAAAGGGCCCTCAGGAATGGTGGCTCAGTCCAAGATTCTG
rJMFF045O19+ GGCTGGTTCAAGAAGCTGAGAAAAGGGCCCTCAGGAATGGTGGCTCAGTCCAAGATTTTG
____________________________________________________________
consensus GGCTGGTTCAAGAAGCTGAGAAAAGGGCCCTCAGGAATGGTGGCTCAGTCCAAGATTCTG
. : . : . : . : . : . :
rJMSF002N15+ CACCCAAGCCTTCTCCAAACTCAAATGGGGTCACTGAAGTGAAAGATGGCTCCTTTATGT
rJMFF002H22+ CACCCAAGCCTTCTCCAAACTCAAATGGGGTCACTGAAGTGAAAGATGGCTCCTTTATGT
rJMFF003E15+ CACCCAAGCCTTCTCCAAACTCAAATGGGGTCACTGAAGTGAAAGATGGCTCCTTTATGT
rJMFF005M18+ CACCCAAGCCTTCTCCAAACTCAAATGGGGTCACTGAAGTGAAAGATGGCTCCTTTATGT
rJMSF004H22+ CACCCAAGCNTTCTCCAAACTCAAATGGGGTCACTGAAGTGAAAGATGGCTCCTTTATGT
rJMSF007G19+ CACCCAAGCCTTCTCCAAACTCAAATGGGGTCACTGAAGTGAAAGATGGCTCCTTTATGT
rJMSF048C23+ CACCCAAGCCTTCTCCAAACTCAAATGGGGTCACTGAAGTGAAAGATGGCTCCTTTATGT
rJMSF046A01+ CACCCAAGCCTTCTCCAAACTCAAATGGGGTCACTGAAGTGAAAGATGGCTCCTTTATGT
rJMFF014H07+ CACCCAAGCCTTCTCCAAACTCAAATGGGGTCACTGAAGTGAAAGATGGCTCCTTTATGT
rJMFF045O19+ CACCCAAGCCTTCTCCAAACTCAAATGGGGTCACTGAAGTGAAAGATGGCTCCTTTATGT
____________________________________________________________
consensus CACCCAAGCCTTCTCCAAACTCAAATGGGGTCACTGAAGTGAAAGATGGCTCCTTTATGT
. : . : . : . : . : . :
rJMSF002N15+ CTTTTCTTGATAGTAGCAAAGCAACAGAGGTTTGAGACAAACAGTTTCCTGGTACCACCC
rJMFF002H22+ CTTTTCTTGATAGTAGCAAAGCAACAGAGGTTTGAGACAAACAGTTTCCTGGTACCACCC
rJMFF003E15+ CTTTTCTTGATAGTAGCAAAGCAACAGAGGTTTGAGACAAACAGTTTCCTGGTACCACCC
rJMFF005M18+ CTTTTCTTGATAGTAGCAAAGCAACAGAGGTTTGAGACAAACAGTTTCCTGGTACCACCC
rJMSF004H22+ CTTTTCTTGATAGTAGCAAAGCAACAGAGGTTTGAGACAAACAGTTTCCTGGTACCACCC
rJMSF007G19+ CTTTTCTTGATAGTAGCAAAGCAACAGAGGTTTGAGACAAACAGTTTCCTGGTACCACCC
rJMSF048C23+ CTTTTCTTGATAGTAGCAAAGCAACAGAGGTTTGAGACAAACAGTTTCCTGGTACCACCC
rJMSF046A01+ CTTTTCTTGATAGTAGCAAAGCAACAGAGGTTTGAGACAAACAGTTTCCTGGTACCACCC
rJMFF014H07+ CTTTTCTTGATAGTAGCAAAGCAACAGAGGTTTGAGACAAACAGTTTCCTGGTACCACCC
rJMFF045O19+ CTTTTCTTGATAGTAGCAAAGCAACAGAGGTTTGAGACAAACAGTTTCCTGGTACCACCC
____________________________________________________________
consensus CTTTTCTTGATAGTAGCAAAGCAACAGAGGTTTGAGACAAACAGTTTCCTGGTACCACCC
. : . : . : . : . : . :
rJMSF002N15+ ATCTCCTTCACAGGTACTCCCATTGCCTTCTTCTCCCCCAACATTCCTACCACTTGACAG
rJMFF002H22+ ATCTCCTTCACAGGTACTCCCATTGCCTTCTTCTCCCCCAACATTCCTACCACTTGACAG
rJMFF003E15+ ATCTCCTTCACAGGTACTCCCATTGCCTTCTTCTCCCCCAACATTCCTACCACTTGACAG
rJMFF005M18+ ATCTCCTTCACAGGTACTCCCATTGCCTTCTTCTCCCCCAACATTCCTACCACTTGACAG
rJMSF004H22+ ATNTCCTTCACAGGTACTCCCATTGCCTTCTTCTCCCCCAACATTCCTACCACTTGACAG
rJMSF007G19+ ATCTCCTTCACAGGTACTCCCATTGCCTTCTTCTCCCCCAACATTCCTACCACTTGACAG
rJMSF048C23+ ATCTCCTTCACAGGTACTCCCATTGCCTTCTTCTCCCCCAACATTCCTACCACTTGACAG
rJMSF046A01+ ATCTCCTTCACAGGTACTCCCATTGCCTTCTTCTCCCCCAACATTCCTACCACTTGACAG
rJMFF014H07+ ATCTCCTTCACAGGTACTCCCATTGCCTTCTTCTCCCCCAACATTCCTACCACTTGACAG
rJMFF045O19+ ATTTCCTTCACAGGTACTCCCATTGCCTTTTTCTCCCCCAACATTCCTACCACTTGACAG
____________________________________________________________
consensus ATCTCCTTCACAGGTACTCCCATTGCCTTCTTCTCCCCCAACATTCCTACCACTTGACAG
. : . : . : . : . : . :
rJMSF002N15+ CAATTCTGGCATTCTGCTATGCACTAGATCTCCAACATGGCTTAGATCATCCTCTTGTTT
rJMFF002H22+ CAATTCTGGCATTCTGCTATGCACTAGATCTCCAACATGGCTTAGATCATCCTCTTGTTT
rJMFF003E15+ CAATTCTGGCATTCTGCTATGCACTAGATCTCCAACATGGCTTAGATCATCCTCTTGTTT
rJMFF005M18+ CAATTCTGGCACTCTGCTATGCACTAGATCTCCAACATGGCTTAGATCATCCTCTTGTTT
rJMSF004H22+ CAATTNTGGCATTCTGCTATGCACTAGATCTCCAACATGGCTTAGATCATCCTCTTGTTT
rJMSF007G19+ CAATTCTGGCATTCTGCTATGCACTAGATCTCCAACATGGCTTAGATCATCCTCTTGTTT
rJMSF048C23+ CAATTCTGGCATTCTGCTATGCACTAGATCTCCAACATGGCTTAGATCATCCTCTTGTTT
rJMSF046A01+ CAATTCTGGCATTCTGCTATGCACTAGATCTCCAACATGGCTTAGATCATCCTCTTGTTT
rJMFF014H07+ CAATTCTGGCATTCTGCTATGCACTAGATCTCCAACATGGCTTAGATCATCCTCTTGTTT
rJMFF045O19+ CAATTCTGGCATTTTGCTATGCACTAGATCTCCAACATGGCTTAGATCATCCTCTTGTTT
____________________________________________________________
consensus CAATTCTGGCATTCTGCTATGCACTAGATCTCCAACATGGCTTAGATCATCCTCTTGTTT
. : . : . : . : . : . :
rJMSF002N15+ CTTCCATTAACCAAAGTTACAGAAATCTAGATTACACCCCCTTTCTTTTTTCCTTCTTTT
rJMFF002H22+ CTTCCATTAACCAAAGTTACAGAAATCTAGATTACACCCCCTTTCTTTTTTCCTTCTTTT
rJMFF003E15+ CTTCCATTAACCAAAGTTACAGAAATCTAGATTACACCCCCTTTCTTTTTTCCTTCTTTT
rJMFF005M18+ CTTCCATTAACCAAAGTTACAGAAATCTAGATTACACCCCCTTTCTTTTTTCCTTCTTTT
rJMSF004H22+ CTTCCATTAACCAAAGTTACAGAAATCTAGATTACACCCCCTTTCTTTTTTCCTTCTTTT
rJMSF007G19+ CTTCCATTAACCAAAGTTACAGAAATCTAGATTACACCCCCTTTCTTTTTTCCTTCTTTT
rJMSF048C23+ CTTCCATTAACCAAAGTTACAGAAATCTAGATTACACCCCCTTTCTTTTTTCCTTCTTTT
rJMSF046A01+ CTTCCATTAACCAAAGTTACAGAAATCTAGATTACACCCCCTTTCTTTTTTCCTTCTTTT
rJMFF014H07+ CTTCCATTAACCAAAGTTACAGAAATCTAGATTACACCCCCTTTCTTTTTTCCTTCTTTT
rJMFF045O19+ CTTCCATTAACCAAAGTTACAGAAATCTAGATTACACCCCCTTTCTTTTTTCCTTCTTTT
____________________________________________________________
consensus CTTCCATTAACCAAAGTTACAGAAATCTAGATTACACCCCCTTTCTTTTTTCCTTCTTTT
. : . : . : . : . : . :
rJMSF002N15+ TAATTTATTGAATTGCTTGTAGGCCTTATTAGCAATTGTTTATGTTT
rJMFF002H22+ TAATTTATTGAATTGCTTGTAGGCCTTATTAGCAATTGTTTATGTTTTTCCTCTTCTGCT
rJMFF003E15+ TAATTTATTGAATTGCTTGTAGGCCTTATTAGCAATTGTTTATGTTTTTCCTCTTCTGCT
rJMFF005M18+ TAATTTATTGAATTGCTTGTAGGCCTTATTAGCAATTGTTTATGTTTTTCCTCTTCTGCT
rJMSF004H22+ TAATTTATTGAATTGCTNGTAGGCCTTATTAGCAA
rJMSF007G19+ TAATTTATTGAATTGCTTGTAGGCCTTATTAGCAATTGTTTATGTTTTTCCTCTTCTGCT
rJMSF048C23+ TAATTTATTGAATTGCTTGTAGGCCATATTAGCAATTGTTTATGTNTNTCCTNTTCNGCT
rJMSF046A01+ TAATTTATTGAATTGCTTGTAGGCCTTATTAGCAATTGTTTATGTTTTTCCTCTTCTGCT
rJMFF014H07+ TAATTTATTGAATTGCTTGTAGGCCTTATTAGCAATTGTTTATGTTTTTCCTCTTCTGCT
rJMFF045O19+ TAATTTATTGAATTGCTTGTAGGCCTTATTAGCAATTGTTTATGTTTTTCCTCTTCTGCT
____________________________________________________________
consensus TAATTTATTGAATTGCTTGTAGGCCTTATTAGCAATTGTTTATGTTTTTCCTCTTCTGCT
. : . : . : . : . : . :
rJMFF002H22+ TCTAAATTTCTAAATCAAAA
rJMFF003E15+ TCTAAATTTNTAAATCA
rJMFF005M18+ TCTAAATT
rJMSF007G19+ TCTAAATTTCTAAATCAAAATCCT
rJMSF048C23+ TCTAAATTTCTAAATCNAAATCCT
rJMSF046A01+ TCTAAATTTCTAAATCAAAATCCT
rJMFF014H07+ TCTAAATTTCTAAATCAAAATCCTTGTACAAAGTATCATGAGTTCCATTT
rJMFF045O19+ TCTAAATTTCTAAATCAAAATCCTTGTACAAAGTATCATGAGTTCCATTTTATGCATGCT
____________________________________________________________
consensus TCTAAATTTCTAAATCAAAATCCTTGTACAAAGTATCATGAGTTCCATTTTATGCATGCT
. : . : . : . : . : . :
rJMFF045O19+ TTTGGCTTATTGGTGXXXXXXXXXXXXXXXXXXXXCTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus TTTGGCTTATTGGTGNNNNNNNNNNNNNNNNNNNNCTCTCCAGGGTGATCCGCCATAAGG