Contig 013823:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF005N11+                       ATATGCTGCCATTTTGGCGCAGTTGAAGAAACATGAAGCTACATTGA
rJMSF026M20+                                   TTTGGCGCAGTTGAAGAAACATGAAGCTACANTGA
                      ____________________________________________________________
consensus                          ATATGCTGCCATTTTGGCGCAGTTGAAGAAACATGAAGCTACATTGA
 
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rJMFF005N11+          AGTTCACATGTAGTGAGATGAGCACATTAAACCAGCACGAGGAGGCAATTGGAGATGAGG
rJMSF026M20+          AGTTCACATGTAGTGAGATGAGCACATTAAACCAGCACGAGGAGGCAATTGGAGATGAGG
                      ____________________________________________________________
consensus             AGTTCACATGTAGTGAGATGAGCACATTAAACCAGCACGAGGAGGCAATTGGAGATGAGG
 
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rJMFF005N11+          GAGATCCTAAAAGCTTAGCTTGGCAAATGCTAATTACTGCTAGGGATGCATGTTTACCAG
rJMSF026M20+          GAGATCCTAAAAGCTTAGCTTGGCAAATGCTAATTACTGCTAGGGATGCATGTTTACCAG
                      ____________________________________________________________
consensus             GAGATCCTAAAAGCTTAGCTTGGCAAATGCTAATTACTGCTAGGGATGCATGTTTACCAG
 
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rJMFF005N11+          TTTGCGGTGGGAATTTGCTTCCCTGCCATGACAGGGAATCCTATAACTATTTACTGGAAC
rJMSF026M20+          TTTGCGGTGGGAATTTGCTTCCCTGCCATGACAGGGAATCCTATAACTATTTACTGGAAC
rJMFF045L22+                                                TCCTATAACTATTTACTGGAAC
                      ____________________________________________________________
consensus             TTTGCGGTGGGAATTTGCTTCCCTGCCATGACAGGGAATCCTATAACTATTTACTGGAAC
 
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rJMFF005N11+          AATCCAAGCCCAAAGATGATCCAGATGGGCATCACTTCTTTTCTTTTACCTATCTTAGGC
rJMSF026M20+          AATCCAAGCCCAAAGATGATCCAGATGGGCATCACTTCTTTTCTTTTACCTATCTTAGGC
rJMFF045L22+          AATCCAAGCCCAAAGATGATCCAGATGGGCATCACTTCTTTTCTTTTACCTATCTTAGGC
                      ____________________________________________________________
consensus             AATCCAAGCCCAAAGATGATCCAGATGGGCATCACTTCTTTTCTTTTACCTATCTTAGGC
 
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rJMFF005N11+          TCAGTCCTGTTCTCTTGGACGCCCAAAATTTCATGGAATTTGAGCGATTTGTGAAGCAAA
rJMSF026M20+          TCAGTCCTGTTCTCTTGGACGCCCAAAATTTCATGGAATTTGAGCGATTTGTGAAGCAAA
rJMFF045L22+          TCAGTCCTGTTTTCTTGGACGCCCAAAATTTCATGGAATTTGAGCGATTTGTGAAGCAAA
                      ____________________________________________________________
consensus             TCAGTCCTGTTCTCTTGGACGCCCAAAATTTCATGGAATTTGAGCGATTTGTGAAGCAAA
 
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rJMFF005N11+          TGCATGGCGAGGTAGTTCTTGATGATATATAGGCATAGCTTGAGGAACACAAGCACATAG
rJMSF026M20+          TGCATGGCGAGGTAGTTCTTGATGATATATAGGCATAGCTTGAGGAACACAAGCACATAG
rJMFF045L22+          TGCATGGCGAGGTAGTTCTTGATGATATATAGGCATAGCTTGAGGAACACAAGCACATAG
                      ____________________________________________________________
consensus             TGCATGGCGAGGTAGTTCTTGATGATATATAGGCATAGCTTGAGGAACACAAGCACATAG
 
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rJMFF005N11+          CGCATATCCCCTCCGTTCTGTCCTGCAAGAAAATGGGGTTTGGGTGTAGAATGGAGTTAT
rJMSF026M20+          CGCATATCCCCTCCGTTCTGTCCTGTAAGAAAATGGGGTTTGGGTGTAGAATGGAGTTAT
rJMFF045L22+          CGCATATCCCCTCCGTTCTGTCCTGCAAGAAAATGGGGTTTGGGTGTAGAATGGAGTTAT
                      ____________________________________________________________
consensus             CGCATATCCCCTCCGTTCTGTCCTGCAAGAAAATGGGGTTTGGGTGTAGAATGGAGTTAT
 
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rJMFF005N11+          ATACTGTAGTACAAATATTGATACAAGTAAAGGAATGGATGATACTTCCCAATTTCCATA
rJMSF026M20+          ATACTGTAGTACAAATATTGATACAAGTAAAGGAATGGATGATACTTCCCAATTTCCATA
rJMFF045L22+          ATACTGTAGTACAAATATTGATACAAGTAAAGGAATGGATGATACTTCCCAATTTCCATA
                      ____________________________________________________________
consensus             ATACTGTAGTACAAATATTGATACAAGTAAAGGAATGGATGATACTTCCCAATTTCCATA
 
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rJMFF005N11+          TCTAGGCTTTTAGAAGCATAGGTATTATTTGTGTATCCTTGTAGTGGCATATCTTACTCC
rJMSF026M20+          TCTAGGCTTTTAGAAGCATAGGTATTATTTGTGTATCCTTGTAGTGGCATATCTTACTCC
rJMFF045L22+          TTTAGGCTTTTAGAAGCATAGGTATTATTTGTGTATCCTTGTAGTGGCATATCTTACTCC
                      ____________________________________________________________
consensus             TCTAGGCTTTTAGAAGCATAGGTATTATTTGTGTATCCTTGTAGTGGCATATCTTACTCC
 
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rJMFF005N11+          AACTATAACATGAGTCCTTCATTGTTTGGAGTTTACCCCAATGCTAAACTGTAAAGAGTT
rJMSF026M20+          AACTATAACATGAGTCCTTCATTGTTTGGAGTTTACCCCAATGCTAAACTGTAAAGAGTT
rJMFF045L22+          AACTATAACATGAGTCCTTCATTGTTTGGAGTTTACCCCAATGCTAAACTGTAAAGAGTT
                      ____________________________________________________________
consensus             AACTATAACATGAGTCCTTCATTGTTTGGAGTTTACCCCAATGCTAAACTGTAAAGAGTT
 
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rJMFF005N11+          ATTTAGAGGTGGGACTAGCAGTATTTTACAGAATGAGGTGCAGGCTTATGGTGAAATGTA
rJMSF026M20+          ATTTAGAGGTGGGACTAGCAGTATTTTACAGAATGAGGTGCAGGCTTATGGTGAAATGTA
rJMFF045L22+          ATTTAGAGGTGGGACTAGCAGTATTTTACAGAATGAGGTGCAGGCTTATGGTGAAATGTA
                      ____________________________________________________________
consensus             ATTTAGAGGTGGGACTAGCAGTATTTTACAGAATGAGGTGCAGGCTTATGGTGAAATGTA
 
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rJMFF005N11+          AAGGTGGAAATTTCCTTGTTNCCCTGTCCTCTTTTAGTGTAATGGAAAGT          
rJMSF026M20+          AAGGTGGAAATTTCCTTGTT-CCCTGTCCTCTTTTAGTGTAATNGAAAGT          
rJMFF045L22+          AAGGTGGAAATTTCCTTGTT-CCCTGTCCTCTTTTAGTGTAATGGAAAGTTCCATTAATT
                      ____________________________________________________________
consensus             AAGGTGGAAATTTCCTTGTT-CCCTGTCCTCTTTTAGTGTAATGGAAAGTTCCATTAATT