| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009A03 | Sequence | 489 | 006380 (5) | ref|XP_009798717.1| | 174 | PREDICTED: uncharacterized protein LOC104244894 [Nicotiana sylvestris] | 671 | 013809 (4) | ref|XP_007049600.1| | 1e-50 | Uncharacterized protein isoform 1 [Theobroma cacao] gb|EOX93757.1| Uncharacteriz |
| JMFF043L18 | Sequence | 656 | 006380 (5) | ref|XP_009798717.1| | 274 | PREDICTED: uncharacterized protein LOC104244894 [Nicotiana sylvestris] | 571 | 013809 (4) | ref|XP_011080534.1| | 2e-24 | PREDICTED: uncharacterized protein LOC105163773 isoform X1 [Sesamum indicum] |
| JMSF025J16 | Sequence | 668 | 006380 (5) | ref|XP_009798717.1| | 270 | PREDICTED: uncharacterized protein LOC104244894 [Nicotiana sylvestris] | 762 | 013809 (4) | ref|XP_007049600.1| | 1e-70 | Uncharacterized protein isoform 1 [Theobroma cacao] gb|EOX93757.1| Uncharacteriz |
| JMSF041G16 | Sequence | 711 | 006380 (5) | ref|XP_009798717.1| | 295 | PREDICTED: uncharacterized protein LOC104244894 [Nicotiana sylvestris] | 653 | 013809 (4) | ref|XP_007049600.1| | 2e-63 | Uncharacterized protein isoform 1 [Theobroma cacao] gb|EOX93757.1| Uncharacteriz |
This contig is upended
. : . : . : . : . : . :
rJMSF041G16+ AATACTC
rJMSF025J16+ ANGGCTGGTTTGANTAGAGAAGGAGCTAAGAATATGATGGGAGGTGGAATACTC
____________________________________________________________
consensus ANGGCTGGTTTGANTAGAGAAGGAGCTAAGAATATGATGGGAGGTGGAATACTC
. : . : . : . : . : . :
rJMSF041G16+ GATGAGAGAAATGACCGTGGCCTGGATACACTTCCTGAATCTGAGGTCAACTTTTTAACC
rJMSF025J16+ GATGAGAGAAATGACCGTGGCCTGGATACACTTCCTGAATCTGAGGTCAACTTTTTAACC
rJMFF009A03+ TGAGGTCAACTTTTTAACC
____________________________________________________________
consensus GATGAGAGAAATGACCGTGGCCTGGATACACTTCCTGAATCTGAGGTCAACTTTTTAACC
. : . : . : . : . : . :
rJMSF041G16+ AAGCTTGTTGCCCTTAAACCAGGGAAAACTGTGCGTGAGATGATAAAAAATGTTATGCTA
rJMSF025J16+ AAGCTTGTTGCCCTTAAACCAGGGAAAACTGTGCGTGAGATGATAAAAAATGTTATGCTA
rJMFF009A03+ AAGCTTGTNGCCNTTAAACCAGGGAAAACTGTGCGTGAGATGATAAAAAATGTTATGCTA
____________________________________________________________
consensus AAGCTTGTTGCCCTTAAACCAGGGAAAACTGTGCGTGAGATGATAAAAAATGTTATGCTA
. : . : . : . : . : . :
rJMSF041G16+ GGGAAAGATGAAGGTGCAGAAAGTCCAGATAGTAATGAAAAGAGTGGTGCTGGGCAAAAG
rJMSF025J16+ GGGAAAGATGAAGGTGCAGAAAGTCCAGATAGTAATGAAAAGAGTGGTGCTGGGCAAAAG
rJMFF009A03+ GGGAAAGATGAAGGTGCAGAAAGTCCAGATAGTAATGAAAAGAGTGGTGCTGGGCAAAAG
____________________________________________________________
consensus GGGAAAGATGAAGGTGCAGAAAGTCCAGATAGTAATGAAAAGAGTGGTGCTGGGCAAAAG
. : . : . : . : . : . :
rJMSF041G16+ AAGTCTGGTGGAATTTTTGGAAGGACTAGTGTCAGTGGTGTTAAACCATTGCCTGTACGT
rJMSF025J16+ AAGTCTGGTGGAATTTTTGGAAGGACTAGTGTCAGTGGTGTTAAACCATTGCCTGTACGT
rJMFF009A03+ AAGTCTGGTGGAATTTTTGGAAGGACTAGTGTCAGTGGTGTTAAACCATTGCCTGTACGT
rJMFF043L18+ TGTCAGTGGTGTTAAACCATTGCCTGTACGT
____________________________________________________________
consensus AAGTCTGGTGGAATTTTTGGAAGGACTAGTGTCAGTGGTGTTAAACCATTGCCTGTACGT
. : . : . : . : . : . :
rJMSF041G16+ CCTGGCATGTTTCTTGAGACTGTTACTAAGGTGTTAGGTGGAATATATACAGGAAATATC
rJMSF025J16+ CCTGGCATGTTTCTTGAGACTGTTACTAAGGTGTTAGGTGGAATATATACAGGAAATATC
rJMFF009A03+ CCTGGCATGTTTCTTGAGACTGTTACTAAGGTGTTAGGTGGAATATATACAGGAAATATC
rJMFF043L18+ CCTGGCATGTTTCTTGAGACTGTTACTAAGGTGTTAGGTGGAATATATACAGGAAATATC
____________________________________________________________
consensus CCTGGCATGTTTCTTGAGACTGTTACTAAGGTGTTAGGTGGAATATATACAGGAAATATC
. : . : . : . : . : . :
rJMSF041G16+ TCTGGGGTTACAGCACAGCATCTTGAATGGGTTCATCAGAACACACTTCAAATTCTTCAA
rJMSF025J16+ TCTGGGGTTACAGCACAGCATCTNGAATGGGTTCATCAGAACACACTTCAAATTCTTCAA
rJMFF009A03+ TCTGGGGTTNCAGCACAGCATCTTGAATGGGTTCATCAGAACACACTTCAAATTCTTCAA
rJMFF043L18+ TCTGGGGTTACAGCACAGCATCTTGAATGGGTTCATCAGAACACACTTCAAATTCTTCAA
____________________________________________________________
consensus TCTGGGGTTACAGCACAGCATCTTGAATGGGTTCATCAGAACACACTTCAAATTCTTCAA
. : . : . : . : . : . :
rJMSF041G16+ GAAATTGCGTTCTAGGCCCTTTCACCATAGCACAGGAACATCTGTTTTTGGCTCACTTCT
rJMSF025J16+ GAAATTGCGTTCTAGGCCCTTTCACCATAGCACAGGAACATCTGTTTTTGGCTCACTTCT
rJMFF009A03+ GAAATTGCGTTCTAGGCCCTTTCACCATAGCACAGGAACATCTGTTTTTGGCTCACTTCN
rJMFF043L18+ GAAATTGCGTTCTAGGCCCTTTCACCATAGCACAGGAACATCTGTTTTTGGCTCACTTCT
____________________________________________________________
consensus GAAATTGCGTTCTAGGCCCTTTCACCATAGCACAGGAACATCTGTTTTTGGCTCACTTCT
. : . : . : . : . : . :
rJMSF041G16+ GGAACATGGCCTGTCAAAATTCAAATAGTCAAGAGCTGATTTTCACACGTCGTGTAGCAT
rJMSF025J16+ GGAACATGGCCTGTCAAAATTCAAATAGTCAAGAGCTGATTTTCACACGTCGTGTAGCAT
rJMFF009A03+ GGAACATGGCCTGTCAAAATTCAAATAGTCAAGAGCTGATTTTCACACGTCGTGTAGCAT
rJMFF043L18+ GGAACATGGCCTGTCAAAATTCAAATAGTCAAGAGCTGATTTTCACACGTCGTGTAGCAT
____________________________________________________________
consensus GGAACATGGCCTGTCAAAATTCAAATAGTCAAGAGCTGATTTTCACACGTCGTGTAGCAT
. : . : . : . : . : . :
rJMSF041G16+ TGTTAAGTCTACAGTCCCGCGACACTGAGCCTTCATGCTTCATAAATGTACGATGCATAT
rJMSF025J16+ TGTTAAGTCTACAGTCCCGCGACACTGAGCCTTCATGCTTCATAAATGTACGATGCATAT
rJMFF009A03+ TGTTAAGTCTACAGTCCCGCGACACTGAGCCTTCATGCTTCATAAATGTACGATGCATAT
rJMFF043L18+ TGTTAAGTCTACAGTCCCGCGACACTGAGCCTTCATGCTTCATAAATGTACGATGCATAT
____________________________________________________________
consensus TGTTAAGTCTACAGTCCCGCGACACTGAGCCTTCATGCTTCATAAATGTACGATGCATAT
. : . : . : . : . : . :
rJMSF041G16+ GTTAGAGTAATATAAGAAAAGAATACGAATAGAGAAACAGAAATGTTCAGATAGAATTTT
rJMSF025J16+ GTTAGAGTAATATAAGAAAAGAATACGAATAGAGAAACAGAAATGTTCAGATAGAATTTT
rJMFF009A03+ GTTAGAGTAATATAAGAAAAGAATACGAATAGAGAAACAGAAATGTTCAGATAGAATTTN
rJMFF043L18+ GTTAGAGTAATATAAGAAAAGAATACGAATAGAGAAACAGAAATGTTCAGATAGAATTTT
____________________________________________________________
consensus GTTAGAGTAATATAAGAAAAGAATACGAATAGAGAAACAGAAATGTTCAGATAGAATTTT
. : . : . : . : . : . :
rJMSF041G16+ GAAGGGAAATGCATACTTTATGTCTATTGTCAAGTTTGAGGCTTTA
rJMSF025J16+ GAAGGGAAATGCATACTTTATGTCTATTGTCAAGTTTGAGGCTTTATAATTATGCTAGTT
rJMFF009A03+ GAAGGGAAATGCATACTTTATGTCTATTGTCAAGTTTGAGGCTTTATAATTATGCTAGTN
rJMFF043L18+ GAAGGGAAATGCATACTTTATGTCTATTGTCAAGTTTGAGGCTTTATAATTATGCTAGTT
____________________________________________________________
consensus GAAGGGAAATGCATACTTTATGTCTATTGTCAAGTTTGAGGCTTTATAATTATGCTAGTT
. : . : . : . : . : . :
rJMSF025J16+ AGATACTAAATTGTATATTTATACCAAGTTAGAACTCAACCCGAC
rJMFF009A03+ AGATACTAAATTGTATATTTATACCAAGTTAGAACTCAACCCGAC
rJMFF043L18+ AGATACTAAATTGTATATTTATACCAAGTTAGAACTCAACCCGACNCCAGTATTTTGTTG
____________________________________________________________
consensus AGATACTAAATTGTATATTTATACCAAGTTAGAACTCAACCCGACNCCAGTATTTTGTTG
. : . : . : . : . : . :
rJMFF043L18+ GTAAATAAATTTCATTAACCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAG
____________________________________________________________
consensus GTAAATAAATTTCATTAACCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAG