| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF026P13 | Sequence | 501 | 013565 (8) | emb|CDP04914.1| | 6e-58 | unnamed protein product [Coffea canephora] | 764 | 013802 (4) | ref|XP_009601820.1| | 4e-60 | PREDICTED: alanine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_03133} [Nicotiana to |
| JMFF037L07 | Sequence | 595 | 013565 (8) | ref|XP_008461868.1| | 1e-81 | PREDICTED: alanine--tRNA ligase-like [Cucumis melo] | 758 | 013802 (4) | ref|XP_009601820.1| | 1e-61 | PREDICTED: alanine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_03133} [Nicotiana to |
| JMFF042P18 | Sequence | 646 | 013565 (8) | ref|XP_008461868.1| | 3e-84 | PREDICTED: alanine--tRNA ligase-like [Cucumis melo] | 560 | 013802 (4) | ref|XP_006347609.1| | 4e-38 | PREDICTED: alanine--tRNA ligase-like [Solanum tuberosum] |
| JMSF050B10 | Sequence | 669 | 013565 (8) | ref|XP_008461868.1| | 1e-80 | PREDICTED: alanine--tRNA ligase-like [Cucumis melo] | 802 | 013802 (4) | ref|XP_009601820.1| | 3e-62 | PREDICTED: alanine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_03133} [Nicotiana to |
This contig is upended
. : . : . : . : . : . :
rJMSF050B10+ TGAGGAGGGAATTGCCAAAGGTATTCGCAGAATTA
____________________________________________________________
consensus TGAGGAGGGAATTGCCAAAGGTATTCGCAGAATTA
. : . : . : . : . : . :
rJMSF050B10+ CTGCTGTCACACCAAACCGTGCTTTTGAGGCCATGAACTGGCATCCTTCCNTGAGAAGAA
rJMFF037L07+ TGAGAAGAA
rJMFF026P13+ TGAGAAGAA
____________________________________________________________
consensus CTGCTGTCACACCAAACCGTGCTTTTGAGGCCATGAACTGGCATCCTTCCNTGAGAAGAA
. : . : . : . : . : . :
rJMSF050B10+ AATAAAAGAAGCAGCTAGTGTTGAAGATAGCTTACTGGAAGAGAAAGTGACTACATTAAA
rJMFF037L07+ AATAAAAGAAGCAGCTAGTGTTGAAGATAGCTTACTGGAAGAGAAAGTGACTACATTAAA
rJMFF026P13+ AATAAAAGAAGCAGCTAGTGTTGAAGATAGCTTACTGGAAGAGAAAGTGACTACATTAAA
____________________________________________________________
consensus AATAAAAGAAGCAGCTAGTGTTGAAGATAGCTTACTGGAAGAGAAAGTGACTACATTAAA
. : . : . : . : . : . :
rJMSF050B10+ TGCTTCAGTGGAGAGGGCACAAATTCCTGCTGCCAAGAAAGATGAGCTCAAGCGTGAACT
rJMFF037L07+ TGCTTCAGTGGAGAGGGCACAAATTCCTGCTGCCAAGAAAGATGAGCTCAAGCGTGAACT
rJMFF026P13+ TGCTTCAGTGGAGAGGGCACAAATTCCTGCTGCCAAGAAAGATGAGCTCAAGCGTGAACT
____________________________________________________________
consensus TGCTTCAGTGGAGAGGGCACAAATTCCTGCTGCCAAGAAAGATGAGCTCAAGCGTGAACT
. : . : . : . : . : . :
rJMSF050B10+ CTCAAAGCTTCAGACCCGAGTTATACAAGCCAAAAAGAGGATTGCTGCTGAGAATTCACT
rJMFF037L07+ CTCAAAGCTTCAGACCCGAGTTATACAAGCCAAAAAGAGGATTGCTGCTGAGAATTCACT
rJMFF026P13+ CTCAAAGCTTCAGACCCGAGTTATACAAGCCAAAAAGAGGATTGCTGCTGAGAATTCACT
____________________________________________________________
consensus CTCAAAGCTTCAGACCCGAGTTATACAAGCCAAAAAGAGGATTGCTGCTGAGAATTCACT
. : . : . : . : . : . :
rJMSF050B10+ TAACGCTGTTAAAGCTGCCTCAGAAATGGCAGAAGCAGCTGTTTCAGGTGGAAAAGCGTA
rJMFF037L07+ TAACGCTGTTAAAGCTGCCTCAGAAATGGCAGAAGCAGCTGTTTCAGGTGGAAAAGCGTA
rJMFF026P13+ TAACGCTGTTAAAGCTGCCTCAGAAATGGCAGAAGCAGCTGTTTCAGGTGGAAAAGCGTA
rJMFF042P18+ GTTTCAGGTGGAAAAGCGTA
____________________________________________________________
consensus TAACGCTGTTAAAGCTGCCTCAGAAATGGCAGAAGCAGCTGTTTCAGGTGGAAAAGCGTA
. : . : . : . : . : . :
rJMSF050B10+ CTGTATCTTGCGTCTAGGTATTGGTCTGGATACAGCTGCAGTTCGTGATGCAGTTGTTAA
rJMFF037L07+ CTGTATCTTGCGTCTAGGTATTGGTCTGGATACAGCTGCAGTTCGTGATGCAGTTGTTAA
rJMFF026P13+ CTGTATCTTGCGTCTAGGTATTGGTCTGGATACAGCTGCAGTTCGTGATGCAGTTGTTAA
rJMFF042P18+ CTGTATCTTGCGTCTAGGTATTGGTCTGGATACAGCTGCAGTTCGTGATGCAGTTGTTAA
____________________________________________________________
consensus CTGTATCTTGCGTCTAGGTATTGGTCTGGATACAGCTGCAGTTCGTGATGCAGTTGTTAA
. : . : . : . : . : . :
rJMSF050B10+ AGTCATGGAGCAGAAGGGGATTGCAGTTCTGATTTTCAGCACAGATGAAGCAGCAAACAA
rJMFF037L07+ AGTCATGGAGCAGAAGGGGATTGCAGTTCTGATTTTCAGCACAGATGAAGCAGCAAACAA
rJMFF026P13+ AGTCATGGAGCAGAAGGGGATTGCAGTTNTGATTTTCAGCACAGATGAAGCAGCAAACAA
rJMFF042P18+ AGTCATGGAGCAGAAGGGGATTGCAGTTCTGATTTTCAGCACAGATGAAGCAGCAAACAA
____________________________________________________________
consensus AGTCATGGAGCAGAAGGGGATTGCAGTTCTGATTTTCAGCACAGATGAAGCAGCAAACAA
. : . : . : . : . : . :
rJMSF050B10+ GGTTTTGGTCTGTGCTGGGGTACCTGAGAAAGGTGATGTGTGCAAACAATTAAGTGTAAA
rJMFF037L07+ GGTTTTGGTCTGTGCTGGGGTACCTGAGAAAGGTGATGTGTGCAAACAATTAAGTGTAAA
rJMFF026P13+ GGTTTTGGTCTGTGCTGGGGTACCTGAGAAAGGTGATGTGTGCAAACAATTAAGTGTAAA
rJMFF042P18+ GGTTTTGGTCTGTGCTGGGGTACCTGAGAAAGGTGATGTGTGCAAACAATTAAGTGTAAA
____________________________________________________________
consensus GGTTTTGGTCTGTGCTGGGGTACCTGAGAAAGGTGATGTGTGCAAACAATTAAGTGTAAA
. : . : . : . : . : . :
rJMSF050B10+ AGAGTGGCTGAATGCTGCACTGAAGCCCTTAGGTGGTAAAGGTGGAGGAGGAAAAGGTGG
rJMFF037L07+ AGAGTGGCTGAATGCTGCACTGAAGCCCTTAGGTGGTAAAGGTGGAGGAGGAAAAGGTGG
rJMFF026P13+ AGAGTGGCTGAATGCTGCACTGAAGCCCTTAGGTGGTAAAGGTGGAGGAGGAAAAGGTGG
rJMFF042P18+ AGAGTGGCTGAATGCTGCACTGAAGCCCTTAGGTGGTAAAGGTGGAGGAGGAAAAGGTGG
____________________________________________________________
consensus AGAGTGGCTGAATGCTGCACTGAAGCCCTTAGGTGGTAAAGGTGGAGGAGGAAAAGGTGG
. : . : . : . : . : . :
rJMSF050B10+ CCTTGCTCAAGGACAGGCATCGGACCTGAAACATGTAGACGAGGCAATGGATTTGGCTGC
rJMFF037L07+ CCTTGCTCAAGGACAGGCATCGGACCTGAAACATGTAGACGAGGCAATGGATTTGGCTGC
rJMFF026P13+ CCTTGCTCAAGGACAGGCATCGGACCTGAAACATGTAGACGAGGCAATGGATTTGGCTGC
rJMFF042P18+ CCTTGCTCAAGGACAGGCATCGGACCTGAAACATGTAGACGAGGCAATGGATTTGGCTGC
____________________________________________________________
consensus CCTTGCTCAAGGACAGGCATCGGACCTGAAACATGTAGACGAGGCAATGGATTTGGCTGC
. : . : . : . : . : . :
rJMSF050B10+ ATCTTTTGCTTCTATTAAATTGAGTTGAAGAAACGCCTCACCTTTCCAGTCAGTAAAAGG
rJMFF037L07+ ATCTTTTGCTTCTATTAAATTGAGTTGAAGAAACGCCTCACCTTTCCAGTCAGTAAAAGG
rJMFF026P13+ ATCTTTTGCTTCTATTAAATTGAGTTGAAGAAACGCCTCACCTTTCCAGTCAGTAAAAGG
rJMFF042P18+ ATCTTTTGCTTCTATTAAATTGAGTTGAAGAAACGCCTCACCTTTCCAGTCAGTAAAAGG
____________________________________________________________
consensus ATCTTTTGCTTCTATTAAATTGAGTTGAAGAAACGCCTCACCTTTCCAGTCAGTAAAAGG
. : . : . : . : . : . :
rJMSF050B10+ TGCAATATTTGACAAAGTTGTGAGCAATTCAAGTCGTCTTCATTCTCTTTAAAACAACAC
rJMFF037L07+ TGCAATATTTGACAAAGTTGTGAGCAATTCAAGTCGTCTTCATTCTCTTTAAAACAACAC
rJMFF026P13+ TGCAATATTTGACAAAGTTGTGAGCAATTCAAGTCGTCTTCATTCTCTTTAAAACAACAC
rJMFF042P18+ TGCAATATTTGACAAAGTTGTGAGCAATTCAAGTCGTCTTCATTCTCTTTAAAACAACAC
____________________________________________________________
consensus TGCAATATTTGACAAAGTTGTGAGCAATTCAAGTCGTCTTCATTCTCTTTAAAACAACAC
. : . : . : . : . : . :
rJMSF050B10+ TACTATTTCATAACTTCCAATTCCTTCAGTGGTGGTTAC
rJMFF037L07+ TACTATTTCATAACTTCCAATTCCTTCAGTGGTGGTTACATGATATGTGATAAACAAAAT
rJMFF026P13+ TACTATTTCATAACTTCCAATTCCTTCAGTGGTGGTTACATGATATGTGATAAACAAAAT
rJMFF042P18+ TACTATTTCATAACTTCCAATTCCTTCAGTGGTGGTTACATGATATGTGATAAACAAAAT
____________________________________________________________
consensus TACTATTTCATAACTTCCAATTCCTTCAGTGGTGGTTACATGATATGTGATAAACAAAAT
. : . : . : . : . : . :
rJMFF037L07+ TCAAATGAATTGAGGATTTCATATTTA
rJMFF026P13+ TCAAATGAATTGAGGATTTCATATTTA
rJMFF042P18+ TCAAATGAATTGAGGATTTCATATTTATACACCTTTGATTGATTGATAGCCAAAAAAAAA
____________________________________________________________
consensus TCAAATGAATTGAGGATTTCATATTTATACACCTTTGATTGATTGATAGCCAAAAAAAAA