Contig 013789:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040M16Sequence541013789 (6)ref|XP_011101536.1|9e-46PREDICTED: probable small nuclear ribonucleoprotein F isoform X1 [Sesamum indic552013789 (6)ref|XP_011101536.1|2e-36PREDICTED: probable small nuclear ribonucleoprotein F isoform X1 [Sesamum indic
JMSF037M23Sequence576013789 (6)ref|XP_011101536.1|2e-44PREDICTED: probable small nuclear ribonucleoprotein F isoform X1 [Sesamum indic529013789 (6)ref|XP_011101536.1|1e-44PREDICTED: probable small nuclear ribonucleoprotein F isoform X1 [Sesamum indic
JMSF044H07Sequence577013789 (6)ref|XP_011101536.1|1e-45PREDICTED: probable small nuclear ribonucleoprotein F isoform X1 [Sesamum indic531013789 (6)ref|XP_011101536.1|8e-46PREDICTED: probable small nuclear ribonucleoprotein F isoform X1 [Sesamum indic

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF037M23+ GAGCTCTTTTCCCTCCACAG-AACCCTAAACCCCTTAA
rJMSF044H07+ GAGCTCTTTTCCCTCCACAGAAACCCTAAACCCCTTAA
JMFF040M16- AACCCTAAACCCCTTAA
JMSF044H07- GAGCTCTTTTCCCTCCACAGAAACCCTAAACCCCTTAA
JMSF037M23- GAGCTCTTTTCCCTCCACAG-AACCCTAAACCCCTTAA
rJMFF040M16+ TAAACCCCTTAA
                      ____________________________________________________________
consensus GAGCTCTTTTCCCTCCACAGAAACCCTAAACCCCTTAA
 
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rJMSF037M23+ ACGCCATTTTTTTGGGTGCTCTCTCCGTGGAAAGCTTCAATGGCTACAGTACCAGTGAAT
rJMSF044H07+ ACGCCATTTTTTTGGGTGCTCTCTCCGTGGAAAGCTTCAATGGCTACAGTACCAGTGAAT
JMFF040M16- ACGCCATTTTTTTGGGTGCTCTCTCCGTGGAAAGCTTCAATGGCTACAGTACCAGTGAAT
JMSF044H07- ACGCCATTTTTTTGGGTGCTCTCTCCGTGGAAAGCTTCAATGGCTACAGTACCAGTGAAT
JMSF037M23- ACGCCATTTTTTTGGGTGCTCTCTCCGTGGAAAGCTTCAATGGCTACAGTACCAGTGAAT
rJMFF040M16+ ANGCCATTTTTTTGGGTGCTTTTTCCGNGGAAAGCTTCAATGGCTACAGTACCAGTGAAT
                      ____________________________________________________________
consensus ACGCCATTTTTTTGGGTGCTCTCTCCGTGGAAAGCTTCAATGGCTACAGTACCAGTGAAT
 
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rJMSF037M23+ CCCAAGCCTTTCCTGAACAACTTGACTGGAAAGCCTGTCATGGTGAAACTGAAGTGGGGA
rJMSF044H07+ CCCAAGCCTTTCCTGAACAACTTGACTGGAAAGCCTGTCATGGTGAAACTGAAGTGGGGA
JMFF040M16- CCCAAGCCTTTCCTGAACAACTTGACTGGAAAGCCTGTCATGGTGAAACTGAAGTGGGGA
JMSF044H07- CCCAAGCCTTTCCTGAACAACTTGACTGGAAAGCCTGTCATGGTGAAACTGAAGTGGGGA
JMSF037M23- CCCAAGCCTTTCCTGAACAACTTGACTGGAAAGCCTGTCATGGTGAAACTGAAGTGGGGA
rJMFF040M16+ CCCAANCCTTTNCTGAACNACTTGACTGGAAAGCCTGTCATGGTGAAACTGAAGTGGGGA
                      ____________________________________________________________
consensus CCCAAGCCTTTCCTGAACAACTTGACTGGAAAGCCTGTCATGGTGAAACTGAAGTGGGGA
 
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rJMSF037M23+ ATGGAGTACAAAGGATTTCTGGTTTCTGTGGGTTCATATATGAACTTGCAGCTGGCAAAT
rJMSF044H07+ ATGGAGTACAAAGGATTTCTGGTTTCTGTGGATTCATATATGAACTTGCAGCTGGCAAAT
JMFF040M16- ATGGAGTACAAAGGATTTCTGGTTTCTGTGGATTCATATATGAACTTGCAGCTGGCAAAT
JMSF044H07- ATGGAGTACAAAGGATTTCTGGTTTCTGTGGATTCATATATGAACTTGCAGCTGGCAAAT
JMSF037M23- ATGGAGTACAAAGGATTTCTGGTTTCTGTGGGTTCATATATGAACTTGCAGCTGGCAAAT
rJMFF040M16+ ATGGAGTACAAAGGATTTTTGGTTTCTGTGGATTCATATATGNACTTGCAGNTGGCAAAT
                      ____________________________________________________________
consensus ATGGAGTACAAAGGATTTCTGGTTTCTGTGGATTCATATATGAACTTGCAGCTGGCAAAT
 
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rJMSF037M23+ GCAGAAGAATACATTGATGGACAAAGCACTGGAACACTTGGAGAAATCCTCATCAGATGT
rJMSF044H07+ GCAGAAGAATACATTGATGGACAAAGCACTGGAACACTTGGAGAAATCCTCATCAGATGT
JMFF040M16- GCAGAAGAATACATTGATGGACAAAGCACTGGAACACTTGGAGAAATCCTCATCAGATGT
JMSF044H07- GCAGAAGAATACATTGATGGACAAAGCACTGGAACACTTGGAGAAATCCTCATCAGATGT
JMSF037M23- GCAGAAGAATACATTGATGGACAAAGCACTGGAACACTTGGAGAAATCCTCATCAGATGT
rJMFF040M16+ GCAGAAGAATACATTGATGGACAAAGCNCTGGAACACTTGGAGNAATCCTCATCAGANGT
                      ____________________________________________________________
consensus GCAGAAGAATACATTGATGGACAAAGCACTGGAACACTTGGAGAAATCCTCATCAGATGT
 
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rJMSF037M23+ AACAATGTCCTCTACCTTCGTGGGGTACCCGAGGATGAAGAGGTGGAAGATGCTGCTGAG
rJMSF044H07+ AACAATGTCCTCTACCTTCGTGGGGTACCCGAGGATGAAGAGGTGGAAGATGCTGCTGAG
JMFF040M16- AACAATGTCCTCTACCTTCGTGGGGTACCCGAGGATGAAGAGGTGGAAGATGCTGCTGAG
JMSF044H07- AACAATGTCCTCTACCTTCGTGGGGTACCCGAGGATGAAGAGGTGGAAGATGCTGCTGAG
JMSF037M23- AACAATGTCCTCTACCTTCGTGGGGTACCCGAGGATGAAGAGGTGGAAGATGCTGCTGAG
rJMFF040M16+ AACAATGTCCTTTACCTTNGTGGGGTACCCGAGGATGAAGAGGTGGAAGATGNTGCTGAG
                      ____________________________________________________________
consensus AACAATGTCCTCTACCTTCGTGGGGTACCCGAGGATGAAGAGGTGGAAGATGCTGCTGAG
 
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rJMSF037M23+ TAGAACTAGGAAGTCCACTTCGTGCTGTAGTCATCATCTGGAGAGGCAACCCGAGTACAA
rJMSF044H07+ TAGAACTAGGAAGTCCACTTCGTGCTGTAGTCATCATCTGGAGAGGCAACCCGAGTACAA
JMFF040M16- TAGAACTAGGAAGTCCACTTCGTGCTGTAGTCATCATCTGGAGAGGCAACCCGAGTACAA
JMSF044H07- TAGAACTAGGAAGTCCACTTCGTGCTGTAGTCATCATCTGGAGAGGCAACCCGAGTACAA
JMSF037M23- TAGAACTAGGAAGTCCACTTCGTGCTGTAGTCATCATCTGGAGAGGCAACCCGAGTACAA
rJMFF040M16+ TAGAANTAGGAAGTCCNCTTCGTGNTGTAGTNATCATTTGGNGAGGCAACCCGAGTACAA
                      ____________________________________________________________
consensus TAGAACTAGGAAGTCCACTTCGTGCTGTAGTCATCATCTGGAGAGGCAACCCGAGTACAA
 
. : . : . : . : . : . :
rJMSF037M23+ GCTCATGTCAAACGATGCTTCAGCCTATCCTCAGAATTGCATCATGTATTGGGTTATTAA
rJMSF044H07+ GCTCATGTCAAACGATGCTTCAGCCTATCCTCAGAATTGCATCATGTATTGGGTTATTAA
JMFF040M16- GCTCATGTCAAACGATGCTTCAGCCTATCCTCAGAATTGCATCATGTATTGGGTTATTAA
JMSF044H07- GCTCATGTCAAACGATGCTTCAGCCTATCCTCAGAATTGCATCATGTATTGGGTTATTAA
JMSF037M23- GCTCATGTCAAACGATGCTTCAGCCTATCCTCAGAATTGCATCATGTATTGGGTTATTAA
rJMFF040M16+ GCTCANGTCNAANGATGNTTCAGCCTATCCTCAGAATTGCATCANGTATTGGGTTATTNA
                      ____________________________________________________________
consensus GCTCATGTCAAACGATGCTTCAGCCTATCCTCAGAATTGCATCATGTATTGGGTTATTAA
 
. : . : . : . : . : . :
rJMSF037M23+ CCACCTTGTGTGTAATTAGTTAATGACACTAATCTTTTTTAAGGCTGCCTTTTGCTGTAA
rJMSF044H07+ CCACCTTGTGTGTAATTAGTTAATGACACTAATCTTTTTTAAGGCTGCCTTTTGCTGTAA
JMFF040M16- CCACCTTGTGTGTAATTAGTTAATGACACTAATCTTTTTTAAGGCTGCCTTTTGCTGTAA
JMSF044H07- CCACCTTGTGTGTAATTAGTTAATGACACTAATCTTTTTTAAGGCTGCCTTTTGCTGTAA
JMSF037M23- CCACCTTGTGTGTAATTAGTTAATGACACTAATCTTTTTTAAGGCTGCCTTTTGCTGTAA
rJMFF040M16+ CCNCCTTGTGTGTAACTAGNTAATGACNNTAATNTTTTNTAAGGNTGCCTTTTGNTGTAA
                      ____________________________________________________________
consensus CCACCTTGTGTGTAATTAGTTAATGACACTAATCTTTTTTAAGGCTGCCTTTTGCTGTAA
 
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rJMSF037M23+ AAGAT
rJMSF044H07+ AAGATTGTCGGAT
JMFF040M16- AAGATTGTCGGATTATTTCTTTCA
JMSF044H07- AAGATTGTCGGATTATTTCTTTCAGGGATGGATGGATGATTAAGGTGCCAAAA
JMSF037M23- AAGATTGTCGGATTATTTCTTTCAGGGATGGATGGATGATTAAGGTGCCAAAA
rJMFF040M16+ AAGATTGTCGGANTATTTNTTTCAGGGATGGATGGATGANTAAGGNGCCAAAATATCCCA
                      ____________________________________________________________
consensus AAGATTGTCGGATTATTTCTTTCAGGGATGGATGGATGATTAAGGTGCCAAAATATCCCA