| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF040K06 | Sequence | 545 | 009163 (4) | ref|XP_004236349.1| | 7e-64 | PREDICTED: uncharacterized protein LOC778252 [Solanum lycopersicum] | 821 | 013788 (4) | ref|XP_006351490.1| | 3e-79 | PREDICTED: uncharacterized protein LOC102591466 isoform X1 [Solanum tuberosum] |
| JMSF002C06 | Sequence | 299 | 009163 (4) | ref|XP_009410652.1| | 73.2 | PREDICTED: uncharacterized protein LOC103992598 [Musa acuminata subsp. malaccen | 713 | 013788 (4) | gb|AAS67373.1| | 6e-73 | CONSTANS interacting protein 5, partial [Solanum lycopersicum] |
| JMSF003G03 | Sequence | 355 | 009163 (4) | ref|XP_009410652.1| | 136 | PREDICTED: uncharacterized protein LOC103992598 [Musa acuminata subsp. malaccen | 777 | 013788 (4) | ref|XP_006351490.1| | 8e-85 | PREDICTED: uncharacterized protein LOC102591466 isoform X1 [Solanum tuberosum] |
| JMSF040M09 | Sequence | 620 | 009163 (4) | ref|XP_004236349.1| | 8e-75 | PREDICTED: uncharacterized protein LOC778252 [Solanum lycopersicum] | 902 | 013788 (4) | ref|XP_006351490.1| | 2e-104 | PREDICTED: uncharacterized protein LOC102591466 isoform X1 [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF040M09+ GATAAATACGAGGGCAAAAAGCT
____________________________________________________________
consensus GATAAATACGAGGGCAAAAAGCT
. : . : . : . : . : . :
rJMSF040M09+ GACTGAGTTAACTGATAGTGANGAATATAACAAAGAAANCAGTGTTGAGTACACCAAAAC
____________________________________________________________
consensus GACTGAGTTAACTGATAGTGANGAATATAACAAAGAAANCAGTGTTGAGTACACCAAAAC
. : . : . : . : . : . :
rJMSF040M09+ TTATTATCAGAATTCTCTACTTCCAAAAATGATTGTGAAAGTAAGTGTTAAGGATCTTGA
rJMSF003G03+ TGTTAAGGATCTTGA
rJMFF040K06+ CTTCCAAAAATGATTGTGAAAGTAAGTGTTAAGGATCTTGA
____________________________________________________________
consensus TTATTATCAGAATTCTCTACTTCCAAAAATGATTGTGAAAGTAAGTGTTAAGGATCTTGA
. : . : . : . : . : . :
rJMSF002C06+ CAAAAG
rJMSF040M09+ CTTAGAAGCTG-CCCTTATTGAGCGCCAGCATCATATTAAGATGAGTAACGAAGCAAAAG
rJMSF003G03+ CTTAGAAGCTG-CCCTTATTGAGCGCCAGCATCATATTAAGATGAGTAACGAAGCAAAAG
rJMFF040K06+ CTTAGAAGCTGCCCCTTATTGAGCGCCAGCATCATATTAAGATGAGTAACGAAGCAAAAG
____________________________________________________________
consensus CTTAGAAGCTG-CCCTTATTGAGCGCCAGCATCATATTAAGATGAGTAACGAAGCAAAAG
. : . : . : . : . : . :
rJMSF002C06+ AACGGGGAGNACAATACAAAATTACCAAGTTGAGACGTAATGTTGAAATGGATGAATATG
rJMSF040M09+ AACGGGGAGAACAATACAAAATTACCAAGTTGAGACGTAATGTTGAAATGGATGAATATG
rJMSF003G03+ AACGGGGAGAACAATACAAAATTACCAAGTTGAGACGTAATGTTGAAATGGATGAATATG
rJMFF040K06+ AACGGGGAGAACAATACAAAATTACCAAGTTGAGACGTAATGTTGAAATGGATGAATATG
____________________________________________________________
consensus AACGGGGAGAACAATACAAAATTACCAAGTTGAGACGTAATGTTGAAATGGATGAATATG
. : . : . : . : . : . :
rJMSF002C06+ ACTTTATCCATTGGCGTCGGTCATTGGAGGAAAGAGAGGCTCTTCTCAGAGATATTAGCT
rJMSF040M09+ ACTTTATCCATTGGCGTCGGTCATTGGAGGAAAGAGAGGCTCTTCTCAGAGATATTAGCT
rJMSF003G03+ ACTTTATCCATTGGCGTCGGTCATTGGAGGAAAGAGAGGCTCTTCTCAGAGATATTAGCT
rJMFF040K06+ ACTTTATCCATTGGCGTCGGTCATTGGAGGAAAGAGAGGCTCTTCTCAGAGATATTAGCT
____________________________________________________________
consensus ACTTTATCCATTGGCGTCGGTCATTGGAGGAAAGAGAGGCTCTTCTCAGAGATATTAGCT
. : . : . : . : . : . :
rJMSF002C06+ GCCGTAAAGCACTTGGGCTTCCACTAGATGAACCTGGCAGGTATATTGATCCTAGCATTT
rJMSF040M09+ GCCGTAAAGCACTTGGGCTTCCACTAGATGAACCTGGCAGGTATATTGATCCTAGCATTT
rJMSF003G03+ GCCGTAAAGCACTTGGGCTTCCACTAGATGAACCTGGCAGGTATATTGATCCTAGCATTT
rJMFF040K06+ GCCGTAAAGCACTTGGGCTTCCACTAGATGAACCTGGCAGGTATATTGATCCTAGCATTT
____________________________________________________________
consensus GCCGTAAAGCACTTGGGCTTCCACTAGATGAACCTGGCAGGTATATTGATCCTAGCATTT
. : . : . : . : . : . :
rJMSF002C06+ TAGGGAAGGATGAATATGATCCTGAAAGCCCACTATATCGTTATGACTATTGGGGAGAAC
rJMSF040M09+ TAGGGAAGGATGAATATGATCCTGAAAGCCCACTATATCGTTATGACTATTGGGGAGAAC
rJMSF003G03+ TAGGGAAGGATGAATATGATCCTGAAAGCCCACTATATCGTTATGACTATTGGGGAGAAC
rJMFF040K06+ TAGGGAAGGATGAATATGATCCTGAAAGCCCACTATATCGTTATGACTATTGGGGAGAAC
____________________________________________________________
consensus TAGGGAAGGATGAATATGATCCTGAAAGCCCACTATATCGTTATGACTATTGGGGAGAAC
. : . : . : . : . : . :
rJMSF002C06+ CAAAGAATTCAGAGAGGAGCAAGCAGGTGCGGGCAACAGATGCGTACAATAAATCCATAG
rJMSF040M09+ CAAAGAATTCAGAGAGGAGCAAGCAGGTGCGGGCAACAGATGCGTACAATAAATCCATAG
rJMSF003G03+ CAAAGAATTCAGAGAGGAGCAAGCAGGTGCGGGCAACAGATGCGTACAATAAATCCATAG
rJMFF040K06+ CAAAGAATTCAGAGAGGAGCAAGCAGGTGCGGGCAACAGATGCGTACAATAAATCCATAG
____________________________________________________________
consensus CAAAGAATTCAGAGAGGAGCAAGCAGGTGCGGGCAACAGATGCGTACAATAAATCCATAG
. : . : . : . : . : . :
rJMSF002C06+ TTGGAAATGGTACTGTTTGGTATGAAATGTCTTATGAGGAAGCCATCAAGCAGCAGATCC
rJMSF040M09+ TTGGAAATGGTACTGTTTGGTATGAAATGTCTTATGAGGAAGCCATCAAGCAGCAGATCC
rJMSF003G03+ TTGGAAATGGTACTGTTTGGTATGAAATGTCTTATGAGGAAGCCATCAAGCAGCAGATCC
rJMFF040K06+ TTGGAAATGGTACTGTTTGGTATGAAATGTCTTATGAGGAAGCCATCAAGCAGCAGATCC
____________________________________________________________
consensus TTGGAAATGGTACTGTTTGGTATGAAATGTCTTATGAGGAAGCCATCAAGCAGCAGATCC
. : . : . : . : . : . :
rJMSF002C06+ AGAGGGAAGCCCAAGGTCTTGGGCAGAAGATGGAAGATGAAGCCAATGAAGAGACATATG
rJMSF040M09+ AGAGGGAAGCCCAAGGTCTTGGGCAGAAGATGGAAGATGAAGCCAATGAAGAGACATATG
rJMSF003G03+ AGAGGGAAGCCCAAGGTCTTGGGCAGAAGATGGAAGATGAAGCCAATGAAGAGACATATG
rJMFF040K06+ AGAGGGAAGCCCAAGGTCTTGGGCAGAAGATGGAAGATGAAGCCAATGAAGAGACATATG
____________________________________________________________
consensus AGAGGGAAGCCCAAGGTCTTGGGCAGAAGATGGAAGATGAAGCCAATGAAGAGACATATG
. : . : . : . : . : . :
rJMSF002C06+ AGGACGACAGTGATGACGACGACTTTGATTACAGCATACTAGGAGGCCCGAGTGACGATT
rJMSF040M09+ AGGACGACAGTGATGACGACGACTTTGATTACAGCATACTAGGAGGCCCGAGTGACGATT
rJMSF003G03+ AGGACGACAGTGATGACGACGACTTTGATTACAGCATACTAGGAGGCCCGAGTGACGATT
rJMFF040K06+ AGGACGACAGTGATGACGACGACTTTGATTACAGCATACTAGGAGGCCCGAGTGACGATT
____________________________________________________________
consensus AGGACGACAGTGATGACGACGACTTTGATTACAGCATACTAGGAGGCCCGAGTGACGATT
. : . : . : . : . : . :
rJMSF002C06+ TTTCCACCCAACCTCATGTCAATGGTACTGAATCTTCTAGGTTGTCAGATGAAGGAATGT
rJMSF040M09+ TTTCCACCCAACCTCATGTCAATGGTACTGAATCTTCTAGGTTGTCAGATGAAGGAATGT
rJMSF003G03+ TTTCCACCCAACCTCATGTCAATGGTACTGAATCTTCTAGGTTGTCAGATGAAGGAATGT
rJMFF040K06+ TTTCCACCCAACCTCATGTCAATGGTACTGAATCTTCTAGGTTGTCAGATGAAGGAATGT
____________________________________________________________
consensus TTTCCACCCAACCTCATGTCAATGGTACTGAATCTTCTAGGTTGTCAGATGAAGGAATGT
. : . : . : . : . : . :
rJMSF002C06+ TTGAGGATTAGGTGTAAATCTGTAATGGTATGTGACGAAGTGAAGAAGATATATGATTAG
rJMSF040M09+ TTGAGGATTAGGTGTAAATCTGTAATGGTATGTGACGAAGTGAAGAAGATATATGATTAG
rJMSF003G03+ TTGAGGATTAGGTGTAAATCTGTAATGGTATGTGACGAAGTGAAGAAGGTATATGATTAG
rJMFF040K06+ TTGAGGATTAGGTGTAAATCTGTAATGGTATGTGACGAAGTGAAGAAGATATATGATTAG
____________________________________________________________
consensus TTGAGGATTAGGTGTAAATCTGTAATGGTATGTGACGAAGTGAAGAAGATATATGATTAG
. : . : . : . : . : . :
rJMSF002C06+ TGAGAACCCCAGTGGGTGGCTGTAGCATTGAGTGTAGTATGTATTAGCGTCTTCATTCAC
rJMSF040M09+ TGAGAACCCCAGTGGGTGGCTGTAGCATTGAGTGTAGTATGTATTAGCGTCTTCATTCAC
rJMSF003G03+ TGAGAACCCCAGTGGGTGGCTGTAGCATTGAGTGTAGTATGTATTAGCGTCTTCATTCAC
rJMFF040K06+ TGAGAACCCCAGTGGGTGGCTGTAGCATTGAGTGTAGTATGTATTAGCGTCTTCATTCAC
____________________________________________________________
consensus TGAGAACCCCAGTGGGTGGCTGTAGCATTGAGTGTAGTATGTATTAGCGTCTTCATTCAC
. : . : . : . : . : . :
rJMSF002C06+ TGAAAATTTTGGCATTCCTTTAC
rJMSF040M09+ TGAAAATTTTGGCATTCCTTTAC
rJMSF003G03+ TGAAAATTTTGGCATTCCTTTAC
rJMFF040K06+ TGAAAATTTTGGCATTCCTTTACAACTTTCCATTGATTGGTTTTTGTGTTCCCTACACCT
____________________________________________________________
consensus TGAAAATTTTGGCATTCCTTTACAACTTTCCATTGATTGGTTTTTGTGTTCCCTACACCT