Contig 013781:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038M24Sequence512013573 (3)ref|XP_002277472.1|131PREDICTED: F-box/kelch-repeat protein At1g30090 [Vitis vinifera] emb|CAN75078.1|771013781 (3)ref|XP_009609743.1|169PREDICTED: F-box/kelch-repeat protein At1g30090 [Nicotiana tomentosiformis]
JMSF013D06Sequence461013573 (3)gb|KJB34963.1|1e-64hypothetical protein B456_006G092600 [Gossypium raimondii]784013781 (3)ref|XP_009609743.1|181PREDICTED: F-box/kelch-repeat protein At1g30090 [Nicotiana tomentosiformis]
JMSF051A02Sequence668013573 (3)ref|XP_002277472.1|190PREDICTED: F-box/kelch-repeat protein At1g30090 [Vitis vinifera] emb|CAN75078.1|729013781 (3)ref|XP_009609743.1|244PREDICTED: F-box/kelch-repeat protein At1g30090 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF051A02+          AACATGAAAACGAACATGGCTTCGTACGATGCAGCGGTTCTCGATGGGAAGCTTCTCGTG
                      ____________________________________________________________
consensus             AACATGAAAACGAACATGGCTTCGTACGATGCAGCGGTTCTCGATGGGAAGCTTCTCGTG
 
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rJMSF051A02+          ACGGAAGGCTGGTTTTGGCCCTTCTATGTTGGGCCGAGGGGTCAAATATACGACCCCGGA
rJMSF013D06+                                                      AATATACGACCCCGGA
                      ____________________________________________________________
consensus             ACGGAAGGCTGGTTTTGGCCCTTCTATGTTGGGCCGAGGGGTCAAATATACGACCCCGGA
 
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rJMSF051A02+          AGTGATAGCTGGGAGAGTATGGCCTCGGGGCTCAGAGAAGGCTGGACGGGCTCGAGCGTC
rJMSF013D06+          AGTGATAGCTGGGAGAGTATGGCCTCGGGGCTCAGAGAAGGCTGGACGGGCTCGAGCGTC
rJMFF038M24+                 GCTGGGAGAGTATGGCCTCGGGGCTCAGAGAAGGCTGGACGGGCTCGAGCGTC
                      ____________________________________________________________
consensus             AGTGATAGCTGGGAGAGTATGGCCTCGGGGCTCAGAGAAGGCTGGACGGGCTCGAGCGTC
 
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rJMSF051A02+          GTGATCGATGGGAGCTTGTTTGTTGTCCCGGAACACGAAAGGACAACGGTCAAGGTTTAT
rJMSF013D06+          GTGATCGATGGGAGCTTGTTTGTTGTCCCGGAACACGAAAGGACAACGGTCAAGGTTTAT
rJMFF038M24+          GTGATCGATGGGAGCTTGTTTGTTGTCCCGGAACACGAAAGGACAACGGTCAAGGTTTAT
                      ____________________________________________________________
consensus             GTGATCGATGGGAGCTTGTTTGTTGTCCCGGAACACGAAAGGACAACGGTCAAGGTTTAT
 
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rJMSF051A02+          GACAAAGAAACGGATTCGTGGAACAAAGTTAACGGCCCGCCTTTGCCACAGCAGATATGC
rJMSF013D06+          GACAAAGAAACGGATTCGTGGAACAAAGTTAACGGCCCGCCTTTGCCACAGCAGATATGC
rJMFF038M24+          GACAAAGAAACGGATTCGTGGAACAAAGTTAACGGCCCGCCTTTGCCACAGCAGATATGC
                      ____________________________________________________________
consensus             GACAAAGAAACGGATTCGTGGAACAAAGTTAACGGCCCGCCTTTGCCACAGCAGATATGC
 
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rJMSF051A02+          AAGCCTTTCTGCGTCAATTCCTGCAGCAACAAGATCATCGTCGTTGGTCGAAACCTTCAC
rJMSF013D06+          AAGCCTTTCTGCGTCAATTCCTGCAGCAACAAGATCATCGTCGTTGGTCGAAACCTTCAC
rJMFF038M24+          AAGCCTTTCTGCGTCAATTCCTGCAGCAACAAGATCATCGTCGTTGGTCGAAACCTTCAC
                      ____________________________________________________________
consensus             AAGCCTTTCTGCGTCAATTCCTGCAGCAACAAGATCATCGTCGTTGGTCGAAACCTTCAC
 
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rJMSF051A02+          GTCGCGGTCGGCATCGTCACGAGACAGCATCGAGGCGGCGATGAATCGCCCCGGAAAGAC
rJMSF013D06+          GTCGCGGTCGGCATCGTCACGAGACAGCATCGAGGCGGCGATGAATCGCCCCGGAAAGAC
rJMFF038M24+          GTCGCGGTCGGCATCGTCACGAGACAGCATCGAGGCGGCGATGAATCGCCCCGGAAAGAC
                      ____________________________________________________________
consensus             GTCGCGGTCGGCATCGTCACGAGACAGCATCGAGGCGGCGATGAATCGCCCCGGAAAGAC
 
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rJMSF051A02+          TTTTGTGTTGAATGGCAGGTGGTGGATGCTCCCCAATCTGTGTGTCATTTGATGCCATCA
rJMSF013D06+          TTTTGTGTTGAATGGCAGGTGGTGGATGCTCCCCAATCTGTGTGTCATTTGATGCCATCA
rJMFF038M24+          TTTTGTGTTGAATGGCAGGTGGTGGATGCTCCCCAATCTGTGTGTCATTTGATGCCATCA
                      ____________________________________________________________
consensus             TTTTGTGTTGAATGGCAGGTGGTGGATGCTCCCCAATCTGTGTGTCATTTGATGCCATCA
 
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rJMSF051A02+          AGTGCACAGGTGCTGTTTGCTTAGATTTCTTCTATTCGGAACGGTGGAAGTGGGCCCGCT
rJMSF013D06+          AGTGCACAGGTGCTGTTTGCTTAGATTTCTACTATTCGGAACGGTGGAAGTGGGCCCGCT
rJMFF038M24+          AGTGCACAGGTGCTGTTTGCTTAGATTTCTTCTATTCGGAACGGTGGAAGTGGGCCCGCT
                      ____________________________________________________________
consensus             AGTGCACAGGTGCTGTTTGCTTAGATTTCTTCTATTCGGAACGGTGGAAGTGGGCCCGCT
 
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rJMSF051A02+          TGCACGGGCAGCTTTGTTGGTTCCTGGGTGATAGGTGGAAGTGGGCCCGCCTGCACGGGC
rJMSF013D06+          TGCACGGGCAGCTTTGTTGGTTCCTGGGTGATAGGTGGAAGTGGGCCCGCCTGCACGGGC
rJMFF038M24+          TGCACGGGCAGCTTTGTTGGTTCCTGGGTGATAGGTGGAAGTGGGCCCGCCTGCACGGGC
                      ____________________________________________________________
consensus             TGCACGGGCAGCTTTGTTGGTTCCTGGGTGATAGGTGGAAGTGGGCCCGCCTGCACGGGC
 
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rJMSF051A02+          AGCTTTGCTGGTTCCTGGGTGATAGATTGCGGGCAAGAATGGTGGGAGTGTGGAGCAATA
rJMSF013D06+          AGCTTTGCTGGTTCCTGGGTGATAGATTGCGGGCAAGAATGGTGGGAGTGTGGAGCAATA
rJMFF038M24+          AGCTTTGCTGGTTCCTGGGTGATAGATTGCGGGCAAGAATGGTGGGAGTGTGGAGCAATA
                      ____________________________________________________________
consensus             AGCTTTGCTGGTTCCTGGGTGATAGATTGCGGGCAAGAATGGTGGGAGTGTGGAGCAATA
 
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rJMSF051A02+          TAGAGAGTGTTGGAAGGATAGTTATGATAGTGTGTGCATCTTCACTAAGGTTTTATAATT
rJMSF013D06+          TAGAGAGTGTTGGAAGGATAGTTATGATAGTGTGTGCATCTTCACTAAGGTTTTATAATT
rJMFF038M24+          TAGAGAGTGTTGGAAGGATAGTTATGATAGTGTGTGCATCTTCACTAAGGTTTTATAATT
                      ____________________________________________________________
consensus             TAGAGAGTGTTGGAAGGATAGTTATGATAGTGTGTGCATCTTCACTAAGGTTTTATAATT
 
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rJMSF051A02+          TATCATCTT                                                   
rJMSF013D06+          TATCATCTTTATGTTCTCATGTATTTATAGTTATAATAAATAGTATTTTGGATTTTGGAT
rJMFF038M24+          TATCATCTTTATGTTCTCATGTATTTATAGTTATAATAAATAGTATTTTGGATTTTGGAT
                      ____________________________________________________________
consensus             TATCATCTTTATGTTCTCATGTATTTATAGTTATAATAAATAGTATTTTGGATTTTGGAT
 
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rJMSF013D06+          TCTCCTTTACTTGAGTTTCTAATATATATATATATAGATAGATAGATACTACTCCTATAA
rJMFF038M24+          TCTCCTTTACTTGAGTTTCTAA--TATATATATATAGATAGATAGATACTACTCCTATAA
                      ____________________________________________________________
consensus             TCTCCTTTACTTGAGTTTCTAATATATATATATATAGATAGATAGATACTACTCCTATAA
 
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rJMSF013D06+          TGTAATATTGGAATAGAAAATAGTGAAAAGATTTTCATTT                    
rJMFF038M24+          TGTAATATTGGAATAGAAAATAGTGAAAAGATTTTCATTTTGAAATTTCAAATAAAAAAT
                      ____________________________________________________________
consensus             TGTAATATTGGAATAGAAAATAGTGAAAAGATTTTCATTTTGAAATTTCAAATAAAAAAT