Contig 013778:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038J12Sequence566013778 (2)ref|XP_009608698.1|1e-57PREDICTED: F-box protein PP2-B10-like [Nicotiana tomentosiformis]695013778 (2)emb|CDP21541.1|9e-34unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFF038J12-                                                                     AC
                      ____________________________________________________________
consensus                                                                       AC
 
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JMFF038J12-           TTTTGTCCTCTTTCATGGGAGAGAATTTTCTCATTTCTTCTTTACTAAGGAAGGGGATCG
                      ____________________________________________________________
consensus             TTTTGTCCTCTTTCATGGGAGAGAATTTTCTCATTTCTTCTTTACTAAGGAAGGGGATCG
 
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JMFF038J12-           GAGCTTATCGCCAGGGATGGACTATTTTGCAACCTTGCCGGAAGGCTGCATAGCCGAAAT
                      ____________________________________________________________
consensus             GAGCTTATCGCCAGGGATGGACTATTTTGCAACCTTGCCGGAAGGCTGCATAGCCGAAAT
 
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JMFF038J12-           CCTTTCGTTCACGTCGGCGGAAGACGCGGCGAGATTATCGGCGTTGTCGAAGGCGTTCAG
                      ____________________________________________________________
consensus             CCTTTCGTTCACGTCGGCGGAAGACGCGGCGAGATTATCGGCGTTGTCGAAGGCGTTCAG
 
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JMFF038J12-           GGCGGCGGCCGCGTCGGAAACTGTTTGGGACAGATTCCTTCCGCCGGATCCCGCCGATAT
                      ____________________________________________________________
consensus             GGCGGCGGCCGCGTCGGAAACTGTTTGGGACAGATTCCTTCCGCCGGATCCCGCCGATAT
 
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JMFF038J12-           CATCTCGAGATCGGTGTCTCCGGTGGTGTATTCCAACGCCAAAGAGCTTTACTTCTCCCT
                      ____________________________________________________________
consensus             CATCTCGAGATCGGTGTCTCCGGTGGTGTATTCCAACGCCAAAGAGCTTTACTTCTCCCT
 
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JMFF038J12-           CTGCGACTCCCCCATTCTCCTCGACGGAGGCAAACTGAGCTTTTCAGTTGATAAAAGGAG
                      ____________________________________________________________
consensus             CTGCGACTCCCCCATTCTCCTCGACGGAGGCAAACTGAGCTTTTCAGTTGATAAAAGGAG
 
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JMFF038J12-           CGGGAAGAAGTGCTTCATGATCGCGGCAAGAGAGCTGAATATTAGTTGGGGGAACAATCG
                      ____________________________________________________________
consensus             CGGGAAGAAGTGCTTCATGATCGCGGCAAGAGAGCTGAATATTAGTTGGGGGAACAATCG
 
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JMFF038J12-           GAGTTACTGGGTATTGAAATCTCACCCTGACTCCAGATTCTCAAAGGTGGCTAGTCTCCG
rJMFF038J12+                                   CCTGACTCCAGATTCTCAAAGGTGGCTAGTCTCCG
                      ____________________________________________________________
consensus             GAGTTACTGGGTATTGAAATCTCACCCTGACTCCAGATTCTCAAAGGTGGCTAGTCTCCG
 
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JMFF038J12-           GTCAATCTGCCGGCTTGATATTCGGGGCAAGATCGGAGCTCAAATGCTCTCTGAAACCAC
rJMFF038J12+          GTCAATCTGCCGGCTTGATATTCGGGGCAAGATCGGAGCTCAAATGCTCTCTGAAACCAC
                      ____________________________________________________________
consensus             GTCAATCTGCCGGCTTGATATTCGGGGCAAGATCGGAGCTCAAATGCTCTCTGAAACCAC
 
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JMFF038J12-           AAACTACGCGGCTTATCTTGTGTT                                    
rJMFF038J12+          AAACTACGCGGCTTATCTTGTGTTCCGATTAGTAGACAACCCCTACGGCTCTGAACCGGC
                      ____________________________________________________________
consensus             AAACTACGCGGCTTATCTTGTGTTCCGATTAGTAGACAACCCCTACGGCTCTGAACCGGC
 
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rJMFF038J12+          AAACGCGGTGGTTAGATTCGCTAGCCGGGAGAGCGTGGAGGAGGCGGAAATGCGAGCTAA
                      ____________________________________________________________
consensus             AAACGCGGTGGTTAGATTCGCTAGCCGGGAGAGCGTGGAGGAGGCGGAAATGCGAGCTAA
 
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rJMFF038J12+          TCGGGTGATATTATGCGGCGGCCAGTTTAAGAGACGTGGATTCACAAGGGAATTTGGAGG
                      ____________________________________________________________
consensus             TCGGGTGATATTATGCGGCGGCCAGTTTAAGAGACGTGGATTCACAAGGGAATTTGGAGG
 
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rJMFF038J12+          TGGAAACCGGCGGCAGGTTTGCCGGGAGAGAAGCGACGGGTGGATGGAGGTGGAAATGGG
                      ____________________________________________________________
consensus             TGGAAACCGGCGGCAGGTTTGCCGGGAGAGAAGCGACGGGTGGATGGAGGTGGAAATGGG
 
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rJMFF038J12+          CAGGTTTTTCGTGGACGGAGGAGTCGACGACGGCGATGTGGAAGCGCGGCTGATTGAGAC
                      ____________________________________________________________
consensus             CAGGTTTTTCGTGGACGGAGGAGTCGACGACGGCGATGTGGAAGCGCGGCTGATTGAGAC
 
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rJMFF038J12+          CTTGGACCTGAACTGGAAGAGCGGTCTCATTGTTGAAGGCATTGAGTTCCGGCCTACCTA
                      ____________________________________________________________
consensus             CTTGGACCTGAACTGGAAGAGCGGTCTCATTGTTGAAGGCATTGAGTTCCGGCCTACCTA
 
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rJMFF038J12+          AATCCAAAACAGCTCCACTCAAGCTTTTAAGATCAAATATTGGATCCATTTCCAATGCTC
                      ____________________________________________________________
consensus             AATCCAAAACAGCTCCACTCAAGCTTTTAAGATCAAATATTGGATCCATTTCCAATGCTC
 
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rJMFF038J12+          CACGCAAAGATGCATGTTAGTTGAGAAACAATGATGAACTCTGTTCAAAAATTGGTTTAA
                      ____________________________________________________________
consensus             CACGCAAAGATGCATGTTAGTTGAGAAACAATGATGAACTCTGTTCAAAAATTGGTTTAA
 
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rJMFF038J12+          ATTCACATTTGAAGTGGTCATTTGTAGTATTATTTTTAAGGAATAAGGGTCAAACACTTT
                      ____________________________________________________________
consensus             ATTCACATTTGAAGTGGTCATTTGTAGTATTATTTTTAAGGAATAAGGGTCAAACACTTT
 
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rJMFF038J12+          TTAGGAATAAGGGTCAAAAAGCGGATTTTCATACGGAATCCAAACACTAAAATCGAAAAA
                      ____________________________________________________________
consensus             TTAGGAATAAGGGTCAAAAAGCGGATTTTCATACGGAATCCAAACACTAAAATCGAAAAA