Contig 013735:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027O07Sequence577003506 (4)gb|KHG11946.1|1e-08Serine/threonine-protein kinase HT1 [Gossypium arboreum]725013735 (3)emb|CDO99532.1|3e-98unnamed protein product [Coffea canephora]
JMSF001P10Sequence262003506 (4)731013735 (3)emb|CDO99532.1|2e-107unnamed protein product [Coffea canephora]
JMSF032D06Sequence677003506 (4)ref|XP_011013425.1|3e-13PREDICTED: serine/threonine-protein kinase HT1-like [Populus euphratica] ref|XP699013735 (3)emb|CDO99532.1|8e-111unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF032D06+             GTTCATTCATTCACGAGGCATTATTCATAGGGATCTCAAACCAGAGAATATACTTAT
rJMSF001P10+                           GAGGCATTATTCATAGGGATCTCAAACCAGAGAATATACTTAT
rJMFF027O07+                                                                 CTTAT
                      ____________________________________________________________
consensus                GTTCATTCATTCACGAGGCATTATTCATAGGGATCTCAAACCAGAGAATATACTTAT
 
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rJMSF032D06+          TGATGAGGAGTTTCATCTCAAAGTAGCTGATTTTGGGATAGCTTGTGAGGAGGCATATTG
rJMSF001P10+          TGATGAGGAGTTTCATCTCAAAGTAGCTGATTTTGGGATAGCTTGTGAGGAGGCATATTG
rJMFF027O07+          TGATGAGGAGTTTCATCTCAAAGTAGCTGATTTTGGGATAGCTTGTGAGGAGGCATATTG
                      ____________________________________________________________
consensus             TGATGAGGAGTTTCATCTCAAAGTAGCTGATTTTGGGATAGCTTGTGAGGAGGCATATTG
 
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rJMSF032D06+          TGATCTCCTGGCCGATGACCCAGGTTCTTATCGTTGGATGGCTCCCGAGATGATTAAACG
rJMSF001P10+          TGATCTCCTGGCCGATGACCCAGGTTCTTATCGTTGGATGGCTCCCGAGATGATTAAACG
rJMFF027O07+          TGATCTCCTGGCCGATGACCCAGGTTCTTATCGTTGGATGGCTCCCGAGATGATTAAACG
                      ____________________________________________________________
consensus             TGATCTCCTGGCCGATGACCCAGGTTCTTATCGTTGGATGGCTCCCGAGATGATTAAACG
 
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rJMSF032D06+          TAAGTCCTATGGTCGGAAGGTTGATGTGTATGGTTTTGGGCTCCTTTTATGGGAACTCGT
rJMSF001P10+          TAAGTCCTATGGTCGGAAGGTTGATGTGTATGGTTTTGGGCTCCTTTTATGGGAACTCGT
rJMFF027O07+          TAAGTCCTATGGTCGGAAGGTTGATGTGTATGGTTTTGGGCTCCTTTTATGGGAACTCGT
                      ____________________________________________________________
consensus             TAAGTCCTATGGTCGGAAGGTTGATGTGTATGGTTTTGGGCTCCTTTTATGGGAACTCGT
 
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rJMSF032D06+          GACTGGATGCATCCCTTATGAAGATATGACTCCGGTTCAAGCAGCTTTTGCTGTAGTGAA
rJMSF001P10+          GACTGGATGCATCCCTTATGAAGATATGACTCCGGTTCAAGCAGCTTTTGCTGTAGTGAA
rJMFF027O07+          GACTGGATGCATCCCTTATGAAGATATGACTCCGGTTCAAGCAGCTTTTGCTGTAGTGAA
                      ____________________________________________________________
consensus             GACTGGATGCATCCCTTATGAAGATATGACTCCGGTTCAAGCAGCTTTTGCTGTAGTGAA
 
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rJMSF032D06+          CAAGAATATGAGACCAACGATTCCCGTGGAGTGCCCCCCTGCCATGAAAGCTTTGATTGA
rJMSF001P10+          CAAGAATATGAGACCAACGATTCCCGTGGAGTGCCCCCCTGCCATGAAAGCTTTGATTGA
rJMFF027O07+          CAAGAATATGAGACCAACGATTCCCGTGGAGTGCCCCCCTGCCATGAAAGCTTTGATTGA
                      ____________________________________________________________
consensus             CAAGAATATGAGACCAACGATTCCCGTGGAGTGCCCCCCTGCCATGAAAGCTTTGATTGA
 
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rJMSF032D06+          ACACTGTTGGTCTTTGCATCCAGAAAATAGGCCCGAGTTTTGGCAGATTGTTAAGATCTT
rJMSF001P10+          ACACTGTTGGTCTTTGCATCCAGAAAATAGGCCCGAGTTTTGGCAGATTGTTAAGATCTT
rJMFF027O07+          ACACTGTTGGTCTTTGCATCCAGAAAATAGGCCCGAGTTTTGGCAGATTGTTAAGATCTT
                      ____________________________________________________________
consensus             ACACTGTTGGTCTTTGCATCCAGAAAATAGGCCCGAGTTTTGGCAGATTGTTAAGATCTT
 
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rJMSF032D06+          AGAGCAGTTTGAGTCTTCACTTGCTAATGATGGGACCTTGAGTCTAGTGCATGGTTTAAC
rJMSF001P10+          AGAGCAGTTTGAGTCTTCACTTGCTAATGATGGGACCTTGAGTCTAGTGCATGGTTTAAC
rJMFF027O07+          AGAGCAGTTTGAGTCTTCACTTGCTAATGATGGGACCTTGAGTCTAGTGCATGGTTTAAC
                      ____________________________________________________________
consensus             AGAGCAGTTTGAGTCTTCACTTGCTAATGATGGGACCTTGAGTCTAGTGCATGGTTTAAC
 
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rJMSF032D06+          GTTTCAAGATCATAAAAAGGGGCGTCTCCATTGGATCCAAAAGCTTGGTCCCGTGCATTC
rJMSF001P10+          GTTTCAAGATCATAAAAAGGGGCGTCTCCATTGGATCCAAAAGCTTGGTCCCGTGCATTC
rJMFF027O07+          GTTTCAAGATCATAAAAAGGGGCGTCTCCATTGGATCCAAAAGCTTGGTCCCGTGCATTC
                      ____________________________________________________________
consensus             GTTTCAAGATCATAAAAAGGGGCGTCTCCATTGGATCCAAAAGCTTGGTCCCGTGCATTC
 
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rJMSF032D06+          AGATTCATTTTCCGTGCCAAAACCTAGATTTGCTTGATGTTTCTTGATGATCTGGAATTT
rJMSF001P10+          AGATTCATTTTCCGTGCCAAAACCTAGATTTGCTTGATGTTTCTTGATGATCTGGAATTT
rJMFF027O07+          AGATTCATTTTCCGTGCCAAAACCTAGATTTGCTTGATGTTTCTTGATGATCTGGAATTT
                      ____________________________________________________________
consensus             AGATTCATTTTCCGTGCCAAAACCTAGATTTGCTTGATGTTTCTTGATGATCTGGAATTT
 
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rJMSF032D06+          TTTTAGTTTCTCCAGGCCTCATTGTAACCGAAGAGGTTAATGTCTCAAGCCTTTTTTGTT
rJMSF001P10+          TTTTAGTTTCTCCAGGCCTCATTGTAACCGAAGAGGTTAATGTCTCAAGCCTTTTTTGTT
rJMFF027O07+          TTTTAGTTTCTCCAGGCCTCATTGTAACCGAAGAGGTTAATGTCTCAAGCCTTTTTTGTT
                      ____________________________________________________________
consensus             TTTTAGTTTCTCCAGGCCTCATTGTAACCGAAGAGGTTAATGTCTCAAGCCTTTTTTGTT
 
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rJMSF032D06+          TTTCTTTTTCCCTTTTTCCCCCCTGTATTCCTCNTCACTTTA                  
rJMSF001P10+          TTTCTTTTTCCCTTTTTCCCCCCTGTATTCCTCTTCACTTTATGCAGTGTGAATGATTAG
rJMFF027O07+          TTTCTTTTTCCCTTTTTCCCCCCTGTATTCCTCTTCACTTTATGCAGTGTGAATGATTAG
                      ____________________________________________________________
consensus             TTTCTTTTTCCCTTTTTCCCCCCTGTATTCCTCTTCACTTTATGCAGTGTGAATGATTAG
 
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rJMSF001P10+          GTGATAGGCATAATGGGCT                                         
rJMFF027O07+          GTGATAGGCATAATGGGCTTGAATGCCTTTGTAGTTTCTTACGTGATATATACACAAAAA
                      ____________________________________________________________
consensus             GTGATAGGCATAATGGGCTTGAATGCCTTTGTAGTTTCTTACGTGATATATACACAAAAA