| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF019L06 | Sequence | 580 | 007584 (5) | ref|XP_006365559.1| | 8e-67 | PREDICTED: DNA replication licensing factor MCM3 homolog 2-like [Solanum tubero | 717 | 013732 (3) | ref|XP_011085257.1| | 7e-50 | PREDICTED: DNA replication licensing factor MCM3 homolog 2 [Sesamum indicum] |
| JMFF027D23 | Sequence | 605 | 007584 (5) | ref|XP_006365559.1| | 5e-72 | PREDICTED: DNA replication licensing factor MCM3 homolog 2-like [Solanum tubero | 628 | 013732 (3) | ref|XP_011085257.1| | 5e-28 | PREDICTED: DNA replication licensing factor MCM3 homolog 2 [Sesamum indicum] |
| JMSF043C22 | Sequence | 775 | 007584 (5) | ref|XP_006365559.1| | 2e-116 | PREDICTED: DNA replication licensing factor MCM3 homolog 2-like [Solanum tubero | 785 | 013732 (3) | ref|XP_011085257.1| | 1e-56 | PREDICTED: DNA replication licensing factor MCM3 homolog 2 [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF043C22+ CTGATCAAATTGCAACTGCA
____________________________________________________________
consensus CTGATCAAATTGCAACTGCA
. : . : . : . : . : . :
rJMSF043C22+ TATGCAGAACTCAGAAAATGCCAGTGCAAATGCAAAGACTGGGGGAGGAACACTTCCAAT
____________________________________________________________
consensus TATGCAGAACTCAGAAAATGCCAGTGCAAATGCAAAGACTGGGGGAGGAACACTTCCAAT
. : . : . : . : . : . :
rJMSF043C22+ TACTGCCAGAACCTTAGAAACAATTATTCGGCTATCAACAGCCCATGCCAAGCTGAAGTT
rJMFF019L06+ CTGCCAGAACCTTAGAAACAATTATTCGGCTATCAACAGCCCATGCCAAGCTGAAGTT
____________________________________________________________
consensus TACTGCCAGAACCTTAGAAACAATTATTCGGCTATCAACAGCCCATGCCAAGCTGAAGTT
. : . : . : . : . : . :
rJMSF043C22+ GAGAAGACAGGTTCTGAAGTCTGATGTAGAAGCTGCTCTTCAAGTTCTAAACTTTGCAAT
rJMFF019L06+ GAGAAGACAGGTTCTGAAGTCTGATGTAGAAGCTGCTCTTCAAGTTCTAAACTTTGCAAT
rJMFF027D23+ CTGCTCTTCAAGTTCTAAACTTTGCAAT
____________________________________________________________
consensus GAGAAGACAGGTTCTGAAGTCTGATGTAGAAGCTGCTCTTCAAGTTCTAAACTTTGCAAT
. : . : . : . : . : . :
rJMSF043C22+ ATATCATCAAGAGCTGACAGAAATGGAGGAGCGTGAAAGAGAAAGGGAGCTGGAGAGGAA
rJMFF019L06+ ATATCATCAAGAGCTGACAGAAATGGAGGAGCGTGAAAGAGAAAGGGAGCTGGAGAGGAA
rJMFF027D23+ ATATCATCAAGAGCTGNCAGAAATGGAGGAGCGTGAAAGAGAAAGGGAGCTGGAGAGGAA
____________________________________________________________
consensus ATATCATCAAGAGCTGACAGAAATGGAGGAGCGTGAAAGAGAAAGGGAGCTGGAGAGGAA
. : . : . : . : . : . :
rJMSF043C22+ ACGCAGAGCTGAGGATGATGCTGGTGATAATGAAAGAAATGATGCTGCTGCTGCTGACAC
rJMFF019L06+ ACGCAGAGCTGAGGATGATGCTGGTGATAATGAAAGAAATGATGCTGCTGCTGCTGACAC
rJMFF027D23+ ACGCAGAGNTGAGGATGATGCTGGTGATAATGAAAGAAATGATGCTGCTNCTGCTGACNC
____________________________________________________________
consensus ACGCAGAGCTGAGGATGATGCTGGTGATAATGAAAGAAATGATGCTGCTGCTGCTGACAC
. : . : . : . : . : . :
rJMSF043C22+ TGATGGAACTCGCAATAATGGCAGTAAAAAGAGCAAGACTAATGAGGGTGGCACTACTAC
rJMFF019L06+ TGATGGAACTCGCAATAATGGCAGTAAAAAGAGCAAGACTAATGAGGGTGGCACTACTAC
rJMFF027D23+ TGATGGAACTCGCAATAATGGCAGTAAAAAGAGCAAGACTAATGAGGGTGGCACTNCTAC
____________________________________________________________
consensus TGATGGAACTCGCAATAATGGCAGTAAAAAGAGCAAGACTAATGAGGGTGGCACTACTAC
. : . : . : . : . : . :
rJMSF043C22+ AAGAACACATGAACATGAAACCATGGAAGTAGATGACCCCCCGACAGCTGAGATCAGCAT
rJMFF019L06+ AAGAACACATGAACATGAAACCATGGAAGTAGATGACCCCCCGACAGCTGAGATCAGCAT
rJMFF027D23+ AAGAACACATGAACATGAAACCATGGAACTAGATGACCCCCCGACAGCTGAGATCAGCAT
____________________________________________________________
consensus AAGAACACATGAACATGAAACCATGGAAGTAGATGACCCCCCGACAGCTGAGATCAGCAT
. : . : . : . : . : . :
rJMSF043C22+ ATCCCCAGAGAGAGTGGAGGCATTTAGTTCGGTGCTGGGTAGGCACAGGCATGCACACCA
rJMFF019L06+ ATCCCCAGAGAGAGTGGAGGCATTTAGCTCGGTGCTGGGTAGGCACAGGCATGCACACCA
rJMFF027D23+ ATCCCCAGAGAGAGTGGAGGCATTTAGCTCGGTGCTGGGTAGGCACAGGCATGCACACCA
____________________________________________________________
consensus ATCCCCAGAGAGAGTGGAGGCATTTAGCTCGGTGCTGGGTAGGCACAGGCATGCACACCA
. : . : . : . : . : . :
rJMSF043C22+ CTTGGAGCAAATGCCAATTGCTGACATCGGGGGTGTTGTAAACAATGGGGCAGCCTTACC
rJMFF019L06+ CTTGGAGCAAATGCCAATTGCTGACATCGGGGGTGTTGTAAACAATGGGGCAGCCTTACC
rJMFF027D23+ CTTGGAGCAAATGCCAATTGCTGACATCGGGGGTGTTGTAAACAATGGGGCAGCCTTACC
____________________________________________________________
consensus CTTGGAGCAAATGCCAATTGCTGACATCGGGGGTGTTGTAAACAATGGGGCAGCCTTACC
. : . : . : . : . : . :
rJMSF043C22+ CTATTCAAGCACAGAAATTATGTCTATTTTAAAGATAATGCAGGAAAAAGACCTGTTGAT
rJMFF019L06+ CTATTCAAGCACAGAAATTATGTCTATTTTAAAGATAATGCAGGAAAAAGACCTGTTGAT
rJMFF027D23+ CTATTCAAGCACAGAAATTATGTCTATTTTAAAGATAATGCAGGAAAAAGACCTGTTGAT
____________________________________________________________
consensus CTATTCAAGCACAGAAATTATGTCTATTTTAAAGATAATGCAGGAAAAAGACCTGTTGAT
. : . : . : . : . : . :
rJMSF043C22+ GATACATAAGGACGCAAGCACCGGCACTGATGTGGTTTACTTCATGTGATTGGAGATGTC
rJMFF019L06+ GATACATAAGGACGCAAGCACCGGCACTGATGTGGTTTACTTCATGTGATTGGAGATGTC
rJMFF027D23+ GATACATAAGGACGCAAGCACCGGCACTGATGTGGTTTACTTCATGTGATTGGAGATGTC
____________________________________________________________
consensus GATACATAAGGACGCAAGCACCGGCACTGATGTGGTTTACTTCATGTGATTGGAGATGTC
. : . : . : . : . : . :
rJMSF043C22+ CATTTATTGGTTTAGGTTAGGTTGGTTTGGTTTCTTTCTATCCGTTTTCCCTTAGAACAG
rJMFF019L06+ CATTTATTGGTTTAGGTTAGGTTGGTTTGGTTTCTTTCTATCCGTTTTCCCTTAGAACAG
rJMFF027D23+ CATTTATTGGTTTAGGTTAGGTTGGTTTGGTTTCTTTCTATCCGTTTTCCCTTAGAACAG
____________________________________________________________
consensus CATTTATTGGTTTAGGTTAGGTTGGTTTGGTTTCTTTCTATCCGTTTTCCCTTAGAACAG
. : . : . : . : . : . :
rJMSF043C22+ AACTCTGCTTCTTTGAGGTTGTGACTTATGAGATGTTTAAAGTAG
rJMFF019L06+ AACTCTGCTTCTTTGAGGTTGTGACTTATGAGATGTTTAAAGTAGTTATGAAGTTAATA
rJMFF027D23+ AACTCTGCTTCTTTGAGGTTGTGACTTATGAGATGTTTAAAGTAGTTATGAAGTTAATAT
____________________________________________________________
consensus AACTCTGCTTCTTTGAGGTTGTGACTTATGAGATGTTTAAAGTAGTTATGAAGTTAATAT