clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF011C09 | Sequence | 537 | 011496 (15) | ref|XP_009618053.1| | 7e-48 | PREDICTED: casein kinase II subunit alpha, chloroplastic-like isoform X2 [Nicot | 656 | 013659 (5) | ref|XP_010548455.1| | 6e-83 | PREDICTED: casein kinase II subunit alpha, chloroplastic [Tarenaya hassleriana] |
JMFF013I09 | Sequence | 600 | 011496 (15) | ref|XP_006364417.1| | 9e-92 | PREDICTED: casein kinase II subunit alpha, chloroplastic-like [Solanum tuberosu | 481 | 013659 (5) | emb|CDP02590.1| | 1e-25 | unnamed protein product [Coffea canephora] |
JMSF010A17 | Sequence | 250 | 011496 (15) | 667 | 013659 (5) | ref|XP_010548455.1| | 6e-93 | PREDICTED: casein kinase II subunit alpha, chloroplastic [Tarenaya hassleriana] | |||
JMSF033N20 | Sequence | 656 | 011496 (15) | ref|XP_009788911.1| | 2e-69 | PREDICTED: casein kinase II subunit alpha, chloroplastic-like isoform X3 [Nicot | 673 | 013659 (5) | emb|CDP02590.1| | 2e-69 | unnamed protein product [Coffea canephora] |
JMSF039F03 | Sequence | 646 | 011496 (15) | ref|XP_009618052.1| | 3e-65 | PREDICTED: casein kinase II subunit alpha-like isoform X1 [Nicotiana tomentosif | 822 | 013659 (5) | ref|XP_010548455.1| | 2e-118 | PREDICTED: casein kinase II subunit alpha, chloroplastic [Tarenaya hassleriana] |
This contig is upended
. : . : . : . : . : . :
rJMSF039F03+ TCACAATGTCCTTATTGATCATGAGAAGAGGAAACTTTGGCTAA
____________________________________________________________
consensus TCACAATGTCCTTATTGATCATGAGAAGAGGAAACTTTGGCTAA
. : . : . : . : . : . :
rJMSF039F03+ TAGATTGGGGACTCGCAGAATTTTATCATCCTGGGAAAGAATATAATGTCCGTGTGGCCT
____________________________________________________________
consensus TAGATTGGGGACTCGCAGAATTTTATCATCCTGGGAAAGAATATAATGTCCGTGTGGCCT
. : . : . : . : . : . :
rJMSF010A17+ CTAGGTATTTTAAAGGCCCTGAACTTCTTGTTGATCTACAAGACTATGATTACTCGCTGG
rJMSF033N20+ CTATGATTACTCGCTGG
rJMFF011C09+ TACAAGACTATGATTACTCGCTGG
rJMSF039F03+ CTAGGTATTTTAAAGGCCCTGAACTTCTTGTTGATCTACAAGACTATGATTACTCGCTGG
____________________________________________________________
consensus CTAGGTATTTTAAAGGCCCTGAACTTCTTGTTGATCTACAAGACTATGATTACTCGCTGG
. : . : . : . : . : . :
rJMSF010A17+ ATTTGTGGAGCTTAGGTTGCATGCTTGCTGG-AATGATATTCCGGAAAGAGCCATTCTTT
rJMSF033N20+ ATTTGTGGAGCTTAGGTTGCATGCTTGCTGGAAATGATATTCCGGAAAGAGCCATTCTTT
rJMFF011C09+ ATTTGTGGAGCTTAGGTTGCATGCTTGCTGG-AATGATATTCCGGAAAGAGCCATTCTTT
rJMSF039F03+ ATTTGTGGAGCTTAGGTTGCATGCTTGCTGG-AATGATATTCCGGAAAGAGCCATTCTTT
____________________________________________________________
consensus ATTTGTGGAGCTTAGGTTGCATGCTTGCTGG-AATGATATTCCGGAAAGAGCCATTCTTT
. : . : . : . : . : . :
rJMSF010A17+ TATGGACATGACAATTACGATCAACTTGTCAAGATTGCTAAGGTATTAGGAACGGATGAA
rJMSF033N20+ TATGGACATGACAATTACGATCAACTTGTCAAGATTGCTAAGGTATTAGGAACGGATGAA
rJMFF011C09+ TATGGACATGACAATTACGATCAACTTGTCAAGATTGCTAAGGTATTAGGAACGGATGAA
rJMSF039F03+ TATGGACATGACAATTACGATCAACTTGTCAAGATTGCTAAGGTATTAGGAACGGATGAA
____________________________________________________________
consensus TATGGACATGACAATTACGATCAACTTGTCAAGATTGCTAAGGTATTAGGAACGGATGAA
. : . : . : . : . : . :
rJMSF010A17+ TTAAATGCTTATCTAAATAAGTATCGTTTAGAATTAGATCCAAACCTTGCAGCCCTTGTT
rJMSF033N20+ TTAAATGCTTATCTAAATAAGTATCGTTTAGAATTAGATCCAAACCTTGCAGCCCTTGTT
rJMFF011C09+ TTAAATGCTTATNTAAATAAGTATCGTTTAGAATTAGATCCAAACCTTGCAGCCCTTGTT
rJMSF039F03+ TTAAATGCTTATCTAAATAAGTATCGTTTAGAATTAGATCCAAACCTTGCAGCCCTTGTT
____________________________________________________________
consensus TTAAATGCTTATCTAAATAAGTATCGTTTAGAATTAGATCCAAACCTTGCAGCCCTTGTT
. : . : . : . : . : . :
rJMSF010A17+ GGAAGGCATAGCAGGAAACCATGGTCGAAGTTCATTAACGCTGAAAATCAACATTTAGCT
rJMSF033N20+ GGAAGGCATAGCAGGAAACCATGGTCGAAGTTCATTAACGCTGAAAATCAACATTTAGCT
rJMFF011C09+ GGAAGGCATAGCAGGAAACCATGGTCGAAGTTCATTAACGCTGAAAATCAACATTTAGCT
rJMSF039F03+ GGAAGGCATAGCAGGAAACCATGGTCGAAGTTCATTAACGCTGAAAATCAACATTTAGCT
rJMFF013I09+ GGAAACCATGGTCGAAGTTCATTAACGNTGAAAATCAACATTTAGCT
____________________________________________________________
consensus GGAAGGCATAGCAGGAAACCATGGTCGAAGTTCATTAACGCTGAAAATCAACATTTAGCT
. : . : . : . : . : . :
rJMSF010A17+ GTCCCCGAGGCAATTGATTTCGTGGACAAGTTGCTCCGTTATGATCATCAGGAACGGCCA
rJMSF033N20+ GTCCCCGAGGCAATTGATTTCGTGGACAAGTTGCTCCGTTATGATCATCAGGAACGGCCA
rJMFF011C09+ GTCCCCGAGGCAATTGATTTCGTGGACAAGTTGCTCCGTTATGATCATCAGGAACGGCCA
rJMSF039F03+ GTCCCCGAGGCAATTGATTTCGTGGACAAGTTGCTCCGTTATGATCATCAGGAACGGCCA
rJMFF013I09+ GTCCCCGAGGCAATTGATTTCGTGGACAAGTTGCTCCGTTANGATCATCAGGAACGGCCA
____________________________________________________________
consensus GTCCCCGAGGCAATTGATTTCGTGGACAAGTTGCTCCGTTATGATCATCAGGAACGGCCA
. : . : . : . : . : . :
rJMSF010A17+ ACTGCAAAAGAAGCTATGGCTCATCCATACTTGTACCCTGTGAGAAACGCTGAAAGCAGC
rJMSF033N20+ ACTGCAAAAGAAGCTATGGCTCATCCATACTTGTACCCTGTGAGAAACGCTGAAAGCAGC
rJMFF011C09+ ACTGCAAAAGAAGCTATGGCTCATCCATACTTGTACCCTGTGAGAAACGCTGAAAGCAGC
rJMSF039F03+ ACTGCAAAAGAAGCTATGGCTCATCCATACTTGTACCCTGTGAGAAACGCTGAAAGCAGC
rJMFF013I09+ ACTGCAAAAGAAGNTATGGCTCATCCATACTTGTACCCTGTGNGAAACGCTGAAAGCAGC
____________________________________________________________
consensus ACTGCAAAAGAAGCTATGGCTCATCCATACTTGTACCCTGTGAGAAACGCTGAAAGCAGC
. : . : . : . : . : . :
rJMSF010A17+ AGAGCTCGCCCCCAGTAGGACACGCCCGCCTGCTGCACGTTTCCAATAACTCGGCGCGTT
rJMSF033N20+ AGAGCTCGCCCCCAGTAGGACACGCCCGCCTGCTGCACGTTTCCAATAACTCGGCGCGTT
rJMFF011C09+ AGAGCTCGCCCCCAGTAGGACACGCCCGCCTGCTGCACGTTTCCAATAACTCGGCGCGTT
rJMSF039F03+ AGAGCTCGCCCCCAGTAGGACACGCCCGCCTGCTGCACGTTTCCAATAACTCGGCGCGTT
rJMFF013I09+ AGAGCTCGCCCCCAGTAGGACACGCCCGCCTGCTGCACGTTTCCAATAACTCGGCGCGTT
____________________________________________________________
consensus AGAGCTCGCCCCCAGTAGGACACGCCCGCCTGCTGCACGTTTCCAATAACTCGGCGCGTT
. : . : . : . : . : . :
rJMSF010A17+ TGTTCACTACACTTGCTGGAATACTGTGAAATTGTGGAACAGTGGAAGTATTTTCATAAT
rJMSF033N20+ TGTTCACTACACTTGCTGGAATACTGTGAAATTGTGGAACAGTGGAAGTATTTTCATAAT
rJMFF011C09+ TGTTCACTACACTTGCTGGAATACTGTGAAATTGTGGAACAGTGGAAGTATTTTCATAAT
rJMSF039F03+ TGTTCACTACACTTGCTGGAATACTGTGAAATTGTGGAACAGTGGAAGTATTTTCATAAT
rJMFF013I09+ TGTTCACTACACTTGCTGGAATACTGNGAAATTGTGGAACAGTGGAAGTATTTTCATAAT
____________________________________________________________
consensus TGTTCACTACACTTGCTGGAATACTGTGAAATTGTGGAACAGTGGAAGTATTTTCATAAT
. : . : . : . : . : . :
rJMSF010A17+ CCAGTCAATTTTTTTTTTCTTTTGCTTTTTCTATTTTCTGGTCGATTTGATTCTCCATTG
rJMSF033N20+ CCAGTCAATTTTTTTTTTCTTTTGCTTTTTCTATTTTCTGGTCGATTTGATTCTCCATTG
rJMFF011C09+ CCAGTCAATTTTTTTTTTCTTTTGCTTTTTCTATTTTCTGGTCGATTTGATTCTCCATTG
rJMSF039F03+ CCAGTCAATTTTTTTTTTCTTTTGCTTTTTCTATTTTCTGGTCGATTTGATTCTCCATTG
rJMFF013I09+ CCAGTCAATTTTTTTTTTCTTTTGCTTTTTCTATTTTCTGGTCGATTTGATTCTCCATTG
____________________________________________________________
consensus CCAGTCAATTTTTTTTTTCTTTTGCTTTTTCTATTTTCTGGTCGATTTGATTCTCCATTG
. : . : . : . : . : . :
rJMSF010A17+ GAAAGTAAGATCTCCTGTTGCCCTGTTGGTCATGAATGGCAGAAACACACTGAATTTTTC
rJMSF033N20+ GAAAGTAAGATCTCCTGTTGCCCTGTTGGTCATGAATGGCAGAAACACACTGAATTTTTC
rJMFF011C09+ GAAAGTAAGATCTCCTGTTGCCCTGTTGGTCATGAATGGCAGAAACACACTGAATTTTTC
rJMSF039F03+ GAAAGTAAGATCTCCTGTTGCCCTGTTGGTCATGAATGGCAGAAACACACTGAATTTTTC
rJMFF013I09+ GAAAGTAAGATCTCCTGTTGCCCTGTTGGTCATGAATGGCAGAAACACACTGAATTTTTC
____________________________________________________________
consensus GAAAGTAAGATCTCCTGTTGCCCTGTTGGTCATGAATGGCAGAAACACACTGAATTTTTC
. : . : . : . : . : . :
rJMSF010A17+ TTTTTT
rJMSF033N20+ TTTTTTCTTATGCGATTTCTCTGAGTCAATCACGTGATTATGTAGTCGCTCCCAAC
rJMFF011C09+ TTTTTTCTTATGCGATT
rJMSF039F03+ TTTTTTCTTATGCGATTTCTCTGAGTCAATCACGTGATTATGTAGTCGCTCCCAAC
rJMFF013I09+ TTTTTTCTTATGCGATTTCTCNGAGTCAATCACGTGATTATGTAGTCGCTCCCAACACAA
____________________________________________________________
consensus TTTTTTCTTATGCGATTTCTCTGAGTCAATCACGTGATTATGTAGTCGCTCCCAACACAA