Contig 013659:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011C09Sequence537011496 (15)ref|XP_009618053.1|7e-48PREDICTED: casein kinase II subunit alpha, chloroplastic-like isoform X2 [Nicot656013659 (5)ref|XP_010548455.1|6e-83PREDICTED: casein kinase II subunit alpha, chloroplastic [Tarenaya hassleriana]
JMFF013I09Sequence600011496 (15)ref|XP_006364417.1|9e-92PREDICTED: casein kinase II subunit alpha, chloroplastic-like [Solanum tuberosu481013659 (5)emb|CDP02590.1|1e-25unnamed protein product [Coffea canephora]
JMSF010A17Sequence250011496 (15)667013659 (5)ref|XP_010548455.1|6e-93PREDICTED: casein kinase II subunit alpha, chloroplastic [Tarenaya hassleriana]
JMSF033N20Sequence656011496 (15)ref|XP_009788911.1|2e-69PREDICTED: casein kinase II subunit alpha, chloroplastic-like isoform X3 [Nicot673013659 (5)emb|CDP02590.1|2e-69unnamed protein product [Coffea canephora]
JMSF039F03Sequence646011496 (15)ref|XP_009618052.1|3e-65PREDICTED: casein kinase II subunit alpha-like isoform X1 [Nicotiana tomentosif822013659 (5)ref|XP_010548455.1|2e-118PREDICTED: casein kinase II subunit alpha, chloroplastic [Tarenaya hassleriana]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF039F03+ TCACAATGTCCTTATTGATCATGAGAAGAGGAAACTTTGGCTAA
                      ____________________________________________________________
consensus TCACAATGTCCTTATTGATCATGAGAAGAGGAAACTTTGGCTAA
 
. : . : . : . : . : . :
rJMSF039F03+ TAGATTGGGGACTCGCAGAATTTTATCATCCTGGGAAAGAATATAATGTCCGTGTGGCCT
                      ____________________________________________________________
consensus TAGATTGGGGACTCGCAGAATTTTATCATCCTGGGAAAGAATATAATGTCCGTGTGGCCT
 
. : . : . : . : . : . :
rJMSF010A17+ CTAGGTATTTTAAAGGCCCTGAACTTCTTGTTGATCTACAAGACTATGATTACTCGCTGG
rJMSF033N20+ CTATGATTACTCGCTGG
rJMFF011C09+ TACAAGACTATGATTACTCGCTGG
rJMSF039F03+ CTAGGTATTTTAAAGGCCCTGAACTTCTTGTTGATCTACAAGACTATGATTACTCGCTGG
                      ____________________________________________________________
consensus CTAGGTATTTTAAAGGCCCTGAACTTCTTGTTGATCTACAAGACTATGATTACTCGCTGG
 
. : . : . : . : . : . :
rJMSF010A17+ ATTTGTGGAGCTTAGGTTGCATGCTTGCTGG-AATGATATTCCGGAAAGAGCCATTCTTT
rJMSF033N20+ ATTTGTGGAGCTTAGGTTGCATGCTTGCTGGAAATGATATTCCGGAAAGAGCCATTCTTT
rJMFF011C09+ ATTTGTGGAGCTTAGGTTGCATGCTTGCTGG-AATGATATTCCGGAAAGAGCCATTCTTT
rJMSF039F03+ ATTTGTGGAGCTTAGGTTGCATGCTTGCTGG-AATGATATTCCGGAAAGAGCCATTCTTT
                      ____________________________________________________________
consensus ATTTGTGGAGCTTAGGTTGCATGCTTGCTGG-AATGATATTCCGGAAAGAGCCATTCTTT
 
. : . : . : . : . : . :
rJMSF010A17+ TATGGACATGACAATTACGATCAACTTGTCAAGATTGCTAAGGTATTAGGAACGGATGAA
rJMSF033N20+ TATGGACATGACAATTACGATCAACTTGTCAAGATTGCTAAGGTATTAGGAACGGATGAA
rJMFF011C09+ TATGGACATGACAATTACGATCAACTTGTCAAGATTGCTAAGGTATTAGGAACGGATGAA
rJMSF039F03+ TATGGACATGACAATTACGATCAACTTGTCAAGATTGCTAAGGTATTAGGAACGGATGAA
                      ____________________________________________________________
consensus TATGGACATGACAATTACGATCAACTTGTCAAGATTGCTAAGGTATTAGGAACGGATGAA
 
. : . : . : . : . : . :
rJMSF010A17+ TTAAATGCTTATCTAAATAAGTATCGTTTAGAATTAGATCCAAACCTTGCAGCCCTTGTT
rJMSF033N20+ TTAAATGCTTATCTAAATAAGTATCGTTTAGAATTAGATCCAAACCTTGCAGCCCTTGTT
rJMFF011C09+ TTAAATGCTTATNTAAATAAGTATCGTTTAGAATTAGATCCAAACCTTGCAGCCCTTGTT
rJMSF039F03+ TTAAATGCTTATCTAAATAAGTATCGTTTAGAATTAGATCCAAACCTTGCAGCCCTTGTT
                      ____________________________________________________________
consensus TTAAATGCTTATCTAAATAAGTATCGTTTAGAATTAGATCCAAACCTTGCAGCCCTTGTT
 
. : . : . : . : . : . :
rJMSF010A17+ GGAAGGCATAGCAGGAAACCATGGTCGAAGTTCATTAACGCTGAAAATCAACATTTAGCT
rJMSF033N20+ GGAAGGCATAGCAGGAAACCATGGTCGAAGTTCATTAACGCTGAAAATCAACATTTAGCT
rJMFF011C09+ GGAAGGCATAGCAGGAAACCATGGTCGAAGTTCATTAACGCTGAAAATCAACATTTAGCT
rJMSF039F03+ GGAAGGCATAGCAGGAAACCATGGTCGAAGTTCATTAACGCTGAAAATCAACATTTAGCT
rJMFF013I09+ GGAAACCATGGTCGAAGTTCATTAACGNTGAAAATCAACATTTAGCT
                      ____________________________________________________________
consensus GGAAGGCATAGCAGGAAACCATGGTCGAAGTTCATTAACGCTGAAAATCAACATTTAGCT
 
. : . : . : . : . : . :
rJMSF010A17+ GTCCCCGAGGCAATTGATTTCGTGGACAAGTTGCTCCGTTATGATCATCAGGAACGGCCA
rJMSF033N20+ GTCCCCGAGGCAATTGATTTCGTGGACAAGTTGCTCCGTTATGATCATCAGGAACGGCCA
rJMFF011C09+ GTCCCCGAGGCAATTGATTTCGTGGACAAGTTGCTCCGTTATGATCATCAGGAACGGCCA
rJMSF039F03+ GTCCCCGAGGCAATTGATTTCGTGGACAAGTTGCTCCGTTATGATCATCAGGAACGGCCA
rJMFF013I09+ GTCCCCGAGGCAATTGATTTCGTGGACAAGTTGCTCCGTTANGATCATCAGGAACGGCCA
                      ____________________________________________________________
consensus GTCCCCGAGGCAATTGATTTCGTGGACAAGTTGCTCCGTTATGATCATCAGGAACGGCCA
 
. : . : . : . : . : . :
rJMSF010A17+ ACTGCAAAAGAAGCTATGGCTCATCCATACTTGTACCCTGTGAGAAACGCTGAAAGCAGC
rJMSF033N20+ ACTGCAAAAGAAGCTATGGCTCATCCATACTTGTACCCTGTGAGAAACGCTGAAAGCAGC
rJMFF011C09+ ACTGCAAAAGAAGCTATGGCTCATCCATACTTGTACCCTGTGAGAAACGCTGAAAGCAGC
rJMSF039F03+ ACTGCAAAAGAAGCTATGGCTCATCCATACTTGTACCCTGTGAGAAACGCTGAAAGCAGC
rJMFF013I09+ ACTGCAAAAGAAGNTATGGCTCATCCATACTTGTACCCTGTGNGAAACGCTGAAAGCAGC
                      ____________________________________________________________
consensus ACTGCAAAAGAAGCTATGGCTCATCCATACTTGTACCCTGTGAGAAACGCTGAAAGCAGC
 
. : . : . : . : . : . :
rJMSF010A17+ AGAGCTCGCCCCCAGTAGGACACGCCCGCCTGCTGCACGTTTCCAATAACTCGGCGCGTT
rJMSF033N20+ AGAGCTCGCCCCCAGTAGGACACGCCCGCCTGCTGCACGTTTCCAATAACTCGGCGCGTT
rJMFF011C09+ AGAGCTCGCCCCCAGTAGGACACGCCCGCCTGCTGCACGTTTCCAATAACTCGGCGCGTT
rJMSF039F03+ AGAGCTCGCCCCCAGTAGGACACGCCCGCCTGCTGCACGTTTCCAATAACTCGGCGCGTT
rJMFF013I09+ AGAGCTCGCCCCCAGTAGGACACGCCCGCCTGCTGCACGTTTCCAATAACTCGGCGCGTT
                      ____________________________________________________________
consensus AGAGCTCGCCCCCAGTAGGACACGCCCGCCTGCTGCACGTTTCCAATAACTCGGCGCGTT
 
. : . : . : . : . : . :
rJMSF010A17+ TGTTCACTACACTTGCTGGAATACTGTGAAATTGTGGAACAGTGGAAGTATTTTCATAAT
rJMSF033N20+ TGTTCACTACACTTGCTGGAATACTGTGAAATTGTGGAACAGTGGAAGTATTTTCATAAT
rJMFF011C09+ TGTTCACTACACTTGCTGGAATACTGTGAAATTGTGGAACAGTGGAAGTATTTTCATAAT
rJMSF039F03+ TGTTCACTACACTTGCTGGAATACTGTGAAATTGTGGAACAGTGGAAGTATTTTCATAAT
rJMFF013I09+ TGTTCACTACACTTGCTGGAATACTGNGAAATTGTGGAACAGTGGAAGTATTTTCATAAT
                      ____________________________________________________________
consensus TGTTCACTACACTTGCTGGAATACTGTGAAATTGTGGAACAGTGGAAGTATTTTCATAAT
 
. : . : . : . : . : . :
rJMSF010A17+ CCAGTCAATTTTTTTTTTCTTTTGCTTTTTCTATTTTCTGGTCGATTTGATTCTCCATTG
rJMSF033N20+ CCAGTCAATTTTTTTTTTCTTTTGCTTTTTCTATTTTCTGGTCGATTTGATTCTCCATTG
rJMFF011C09+ CCAGTCAATTTTTTTTTTCTTTTGCTTTTTCTATTTTCTGGTCGATTTGATTCTCCATTG
rJMSF039F03+ CCAGTCAATTTTTTTTTTCTTTTGCTTTTTCTATTTTCTGGTCGATTTGATTCTCCATTG
rJMFF013I09+ CCAGTCAATTTTTTTTTTCTTTTGCTTTTTCTATTTTCTGGTCGATTTGATTCTCCATTG
                      ____________________________________________________________
consensus CCAGTCAATTTTTTTTTTCTTTTGCTTTTTCTATTTTCTGGTCGATTTGATTCTCCATTG
 
. : . : . : . : . : . :
rJMSF010A17+ GAAAGTAAGATCTCCTGTTGCCCTGTTGGTCATGAATGGCAGAAACACACTGAATTTTTC
rJMSF033N20+ GAAAGTAAGATCTCCTGTTGCCCTGTTGGTCATGAATGGCAGAAACACACTGAATTTTTC
rJMFF011C09+ GAAAGTAAGATCTCCTGTTGCCCTGTTGGTCATGAATGGCAGAAACACACTGAATTTTTC
rJMSF039F03+ GAAAGTAAGATCTCCTGTTGCCCTGTTGGTCATGAATGGCAGAAACACACTGAATTTTTC
rJMFF013I09+ GAAAGTAAGATCTCCTGTTGCCCTGTTGGTCATGAATGGCAGAAACACACTGAATTTTTC
                      ____________________________________________________________
consensus GAAAGTAAGATCTCCTGTTGCCCTGTTGGTCATGAATGGCAGAAACACACTGAATTTTTC
 
. : . : . : . : . : . :
rJMSF010A17+ TTTTTT
rJMSF033N20+ TTTTTTCTTATGCGATTTCTCTGAGTCAATCACGTGATTATGTAGTCGCTCCCAAC
rJMFF011C09+ TTTTTTCTTATGCGATT
rJMSF039F03+ TTTTTTCTTATGCGATTTCTCTGAGTCAATCACGTGATTATGTAGTCGCTCCCAAC
rJMFF013I09+ TTTTTTCTTATGCGATTTCTCNGAGTCAATCACGTGATTATGTAGTCGCTCCCAACACAA
                      ____________________________________________________________
consensus TTTTTTCTTATGCGATTTCTCTGAGTCAATCACGTGATTATGTAGTCGCTCCCAACACAA