| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF013F16 | Sequence | 527 | 000538 (7) | emb|CDP07208.1| | 5e-110 | unnamed protein product [Coffea canephora] | 763 | 013658 (5) | ref|XP_002516768.1| | 4e-60 | rnase l inhibitor, putative [Ricinus communis] gb|EEF45666.1| rnase l inhibitor, |
| JMSF004E05 | Sequence | 416 | 000538 (7) | ref|XP_009770922.1| | 1e-68 | PREDICTED: ABC transporter E family member 2 [Nicotiana sylvestris] ref|XP_00977 | 283 | 013658 (5) | |||
| JMSF005F22 | Sequence | 347 | 000538 (7) | emb|CDP07208.1| | 2e-48 | unnamed protein product [Coffea canephora] | 456 | 013658 (5) | |||
| JMSF021A05 | Sequence | 711 | 000538 (7) | ref|XP_008377063.1| | 4e-122 | PREDICTED: ABC transporter E family member 2-like [Malus domestica] ref|XP_00837 | 796 | 013658 (5) | ref|XP_002516768.1| | 2e-75 | rnase l inhibitor, putative [Ricinus communis] gb|EEF45666.1| rnase l inhibitor, |
| JMSF027I02 | Sequence | 655 | 000538 (7) | emb|CDP07208.1| | 2e-131 | unnamed protein product [Coffea canephora] | 762 | 013658 (5) | ref|XP_002516768.1| | 9e-64 | rnase l inhibitor, putative [Ricinus communis] gb|EEF45666.1| rnase l inhibitor, |
This contig is upended
. : . : . : . : . : . :
rJMSF021A05+ CTGACATATATTTGATAGATGAACCAAGTGCTTACCTGGACTCTGAGCAGC
____________________________________________________________
consensus CTGACATATATTTGATAGATGAACCAAGTGCTTACCTGGACTCTGAGCAGC
. : . : . : . : . : . :
rJMSF027I02+ TTATACTTCATGCAAAGAAGACNACTTTTG
rJMSF021A05+ GTATTGGTGCTTCCAAAGTCATTAAGAGGTTTATACTTCATGCAAAGAAGACAGCTTTTG
rJMFF013F16+ AAGAGGTTTATACTTCATGCAAAGAAGACAGCTTTTG
____________________________________________________________
consensus GTATTGGTGCTTCCAAAGTCATTAAGAGGTTTATACTTCATGCAAAGAAGACAGCTTTTG
. : . : . : . : . : . :
rJMSF027I02+ TGGTAGAGCATGACTTCATAATGGCAACTTACCTGGCAGATAGAGTAATTGTGTATGAAG
rJMSF021A05+ TGGTAGAGCATGACTTCATAATGGCAACTTACCTGGCAGATAGAGTAATTGTGTATGAAG
rJMFF013F16+ TGGTAGAGCATGACTTCATAATGGCAACTTACCTGGCAGATAGAGTAATTGTGTATGAAG
____________________________________________________________
consensus TGGTAGAGCATGACTTCATAATGGCAACTTACCTGGCAGATAGAGTAATTGTGTATGAAG
. : . : . : . : . : . :
rJMSF027I02+ GGAGGCCATCGGTGGATTGTATTGCAAATTCACCACAATCATTGTTGACGGGAATGAACC
rJMSF021A05+ GGAGGCCATCGGTGGATTGTATTGCAAATTCACCACAATCATTGTTGACGGGAATGAACC
rJMFF013F16+ GGAGGCCATCGGTGGATTGTATTGCAAATTCACCACAATCATTGTTGACGGGAATGAACC
____________________________________________________________
consensus GGAGGCCATCGGTGGATTGTATTGCAAATTCACCACAATCATTGTTGACGGGAATGAACC
. : . : . : . : . : . :
rJMSF027I02+ TATTCTTATCTCATCTGGATATCACTTTCCGCCGGGACCCAACGAATTACCGGCCACGAA
rJMSF021A05+ TATTCTTATCTCATCTGGATATCACTTTCCGCCGGGACCCAACGAATTACCGGCCACGAA
rJMFF013F16+ TATTCTTATCTCATCTGGATATCACTTTCCGCCGGGACCCAACGAATTACCGGCCACGAA
____________________________________________________________
consensus TATTCTTATCTCATCTGGATATCACTTTCCGCCGGGACCCAACGAATTACCGGCCACGAA
. : . : . : . : . : . :
rJMSF005F22+ CC
rJMSF004E05+ TATTATTACC
rJMSF027I02+ TTAACAAACTCGACTCAACCAAGGACCGGGAACAAAAGAATGCTGGATCCTATTATTACC
rJMSF021A05+ TTAACAAACTCGACTCAACCAAGGACCGGGAACAAAAGAATGCTGGATCCTATTATTACC
rJMFF013F16+ TTAACAAACTCGACTCAACCAAGGACCGGGAACAAAAGAATGCTGGATCCTATTATTACC
____________________________________________________________
consensus TTAACAAACTCGACTCAACCAAGGACCGGGAACAAAAGAATGCTGGATCCTATTATTACC
. : . : . : . : . : . :
rJMSF005F22+ TGGATGATTGAGCTAATCATTATTCTGCAACAGGTTAGAGATGAGCTTCGTCATTTCTTT
rJMSF004E05+ TGGATGATTGAGCTAATCATTATTCTGCAACAGGTTAGAGATGAGCTTCGTCATTTCTTT
rJMSF027I02+ TGGATGATTGAGCTAATCATTATTCTGCAACAGGTTAGAGATGAGCTTCGTCATTTCTTT
rJMSF021A05+ TGGATGATTGAGCTAATCATTATTCTGCAACAGGTTAGAGATGAGCTTCGTCATTTCTTT
rJMFF013F16+ TGGATGATTGAGCTAATCATTATTCTGCAACAGGTTAGAGATGAGCTTCGTCATTTCTTT
____________________________________________________________
consensus TGGATGATTGAGCTAATCATTATTCTGCAACAGGTTAGAGATGAGCTTCGTCATTTCTTT
. : . : . : . : . : . :
rJMSF005F22+ TTACTGCCGCTGGTGCCTACATGTATAACAGGAGCTCCATCCTTCCCTCAGATGGGAAGT
rJMSF004E05+ TTACTGCCGNTGGTGCCTACATGTATAACAGAAGCTCCATCCTTCCCTCAGGTGGGAAGT
rJMSF027I02+ TTACTGCCGCTGGTGCCTACATGTATAACAGAAGCTCCATCCTTCCCTCAGGTGGGAAGT
rJMSF021A05+ TTACTGCCGCTGGTGCCTACATGTATAACAGAAGCTCCATCCTTCCCTCAGGTGGGAAGT
rJMFF013F16+ TTACTGCCGCTGGTGCCTACATGTATAACAGAAGCTCCATCCTTCCCTCAGGTGGGAAGT
____________________________________________________________
consensus TTACTGCCGCTGGTGCCTACATGTATAACAGAAGCTCCATCCTTCCCTCAGGTGGGAAGT
. : . : . : . : . : . :
rJMSF005F22+ GTTGAAAAGAAGCCCTGNTTATGGGTTTCAAATGCCACATTTTGGGTGATATATAAGAGG
rJMSF004E05+ GTTGAAAAGAAGCCCTGTTTATGGGTTTCAAATGCCNCATTTTGGGNGATATATNAGAGG
rJMSF027I02+ GTTGAAAAGAAGCCCTGTTTATGGGTTTCAAATGCCACATTTTGGGTGATATATAAGAGG
rJMSF021A05+ GTTGAAAAGAAGCCCTGTTTATGGGTTTCAAATGCCACATTTTGGGTGATATATAAGAGG
rJMFF013F16+ GTTGAAAAGAAGCCCTGTTTATGGGTTTCAAATGCCACATTTTGGGTGATATATAAGAGG
____________________________________________________________
consensus GTTGAAAAGAAGCCCTGTTTATGGGTTTCAAATGCCACATTTTGGGTGATATATAAGAGG
. : . : . : . : . : . :
rJMSF005F22+ CGGCACTTCTTTGTGAGGAGGATAAAGACTTCATAAAATCTATAGAGGCTCATTCATGAA
rJMSF004E05+ CGGCACTTCTTTGTGAGGAGGATAAAGNCTTCATAAAATCTATGGAGGNTCATTCATGAA
rJMSF027I02+ CGGCACTTCTTTGTGAGGAGGATAAAGACTTCATAAAATCTATAGAGGCTCATTCATGAA
rJMSF021A05+ CGGCACTTCTTTGTGAGGAGGATAAAGACTTCATAAAATCTATAGAGGCTCATTCATGAA
rJMFF013F16+ CGGCACTTCTTTGTGAGGAGGATAAAGACTTCATAAAATCTATAGAGGCTCATTCATGAA
____________________________________________________________
consensus CGGCACTTCTTTGTGAGGAGGATAAAGACTTCATAAAATCTATAGAGGCTCATTCATGAA
. : . : . : . : . : . :
rJMSF005F22+ GAGAACTACTCCCGGACTATAGTGCTGCAATATTGTGTCTTTATCTTNTACAGTATCTGT
rJMSF004E05+ GAGAACTACTCCCGGACTATAGTGCTGCAATAT
rJMSF027I02+ GAGAACTACTCCCGGACTATAGTGCTGCAATATTGTGTCTTTATCTTTTACAGTATTTGT
rJMSF021A05+ GAGAACTACTCCCGGACTATAGTGCTGCAATATTGTGTCTTTATCTTTTACAGTATTTGT
rJMFF013F16+ GAGAACTACTCCCGGACTATAGTGCTGCAATATTGTGTCTTTATCTTTTACAGTATTTGT
____________________________________________________________
consensus GAGAACTACTCCCGGACTATAGTGCTGCAATATTGTGTCTTTATCTTTTACAGTATTTGT
. : . : . : . : . : . :
rJMSF005F22+ TATTTACNTAGTGTAGTACGACACTTGGTTTGATATGTTTTTCTTCAATATTCTTGGGCC
rJMSF027I02+ TATTTAC-TAGTGTAGTACGACACTTGGTTTGATATGTTTTTCTTCAATATTCTTGGGCC
rJMSF021A05+ TATTTAC-TAGTGTAGTACGACACTTGGTTTGATATGTTTTTCTTCAATATTCTTGGGCC
rJMFF013F16+ TATTTAC-TAGTGTAGTACGACACTTGGTTTGATATGTTTTTCTTCAATATTCTTGGGCC
____________________________________________________________
consensus TATTTAC-TAGTGTAGTACGACACTTGGTTTGATATGTTTTTCTTCAATATTCTTGGGCC
. : . : . : . : . : . :
rJMSF005F22+ ATTTTGGGATAAATTTTCTGTTGTATTTTTTTAAATTTTATNTTTTAAATACCTCCGGCA
rJMSF027I02+ ATTTTGGGATAAATTTTCTGTTGTATTTTTTTAAATTTTATTTTTTAAATACCTCCGGCA
rJMSF021A05+ ATTTTGGGATAAATTTTCTGTTGTATTTTTTTAAATTTTATTTTTTAAATACCTCCGGCA
rJMFF013F16+ ATTTTGGGATAAATTTTCTGTTGTATTTTTTTAAATTTTATTTTTTAAATACCTCCGGCA
____________________________________________________________
consensus ATTTTGGGATAAATTTTCTGTTGTATTTTTTTAAATTTTATTTTTTAAATACCTCCGGCA
. : . : . : . : . : . :
rJMSF005F22+ GATGC
rJMSF027I02+ GATGC
rJMSF021A05+ GATGCATGTATTCACTGGAGATAGAT
rJMFF013F16+ GATGCATGTATTCACTGGAGATAGATGGAAAATAACCAACTGAATTAATACNGTCAGTNA
____________________________________________________________
consensus GATGCATGTATTCACTGGAGATAGATGGAAAATAACCAACTGAATTAATACNGTCAGTNA