clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF011O12 | Sequence | 594 | 003858 (3) | ref|XP_009761283.1| | 128 | PREDICTED: uncharacterized protein LOC104213475 [Nicotiana sylvestris] | 733 | 013651 (3) | emb|CDO99871.1| | 3e-18 | unnamed protein product [Coffea canephora] |
JMSF044D12 | Sequence | 713 | 003858 (3) | ref|XP_006345860.1| | 1e-33 | PREDICTED: micronuclear linker histone polyprotein-like isoform X2 [Solanum tub | 734 | 013651 (3) | emb|CDO99871.1| | 9e-11 | unnamed protein product [Coffea canephora] |
JMSF044H20 | Sequence | 710 | 003858 (3) | ref|XP_006345860.1| | 6e-33 | PREDICTED: micronuclear linker histone polyprotein-like isoform X2 [Solanum tub | 634 | 013651 (3) | emb|CDO99871.1| | 1e-07 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF044D12+ GCGAGTGAAATTCGTGGAAGAACGGAGATTCCTG
rJMFF011O12+ AACGGAGATTCCTG
____________________________________________________________
consensus GCGAGTGAAATTCGTGGAAGAACGGAGATTCCTG
. : . : . : . : . : . :
rJMSF044D12+ CCGGATGNCCCGGCACTTTTCAGATTGCCAACAGACTTACATCGGGATACAACTTCTATT
rJMFF011O12+ CCGGATG-CCCGGCACTTTTCAGATTGCCAACAGACTTACATCGGGATACAACTTCTATT
____________________________________________________________
consensus CCGGATGNCCCGGCACTTTTCAGATTGCCAACAGACTTACATCGGGATACAACTTCTATT
. : . : . : . : . : . :
rJMSF044H20+ CTCTACAATTCAGTATGGTAAATCGNTCCCCTGAAACTGTTTCCGATATGTTCTTCCCC
rJMSF044D12+ CCTCTACAATTCAGTATGGTAAATCGTTCCCCTGAAACTGTTTCCGATATGTTCTTCCCC
rJMFF011O12+ CCTCTACAATTCAGTATGGTAAATCGTTCCCCTGAAACTGTTTCCGATATGTTCTTCCCC
____________________________________________________________
consensus CCTCTACAATTCAGTATGGTAAATCGTTCCCCTGAAACTGTTTCCGATATGTTCTTCCCC
. : . : . : . : . : . :
rJMSF044H20+ AGCCATTTCCTCGAGTCTCGATCTACCTCTTCTGCAGGGAGTCCATTCTCTTCCATCCCC
rJMSF044D12+ AGCCATTTCCTCGAGTCTCGATCTACCTCTTCTGCAGGGAGTCCATTCTCTTCCATCCCC
rJMFF011O12+ AGCCATTTCCTCGAGTCTCGATCTACCTCTTCTGCAGGGAGTCCATTCTCTTCCATCCCC
____________________________________________________________
consensus AGCCATTTCCTCGAGTCTCGATCTACCTCTTCTGCAGGGAGTCCATTCTCTTCCATCCCC
. : . : . : . : . : . :
rJMSF044H20+ ACCAACCCTTCTATACAAATTGGATCAAGAAATGCACCGTGGAGGCCAATGTTTGAGCCT
rJMSF044D12+ ACCAACCCTTCTATACAAATTGGATCAAGAAATGCACCGTGGAGGCCAATGTTTGAGCCT
rJMFF011O12+ ACCAACCCTTCTATACAAATTGGATCAAGAAATGCACCGTGGAGGCCAATGTTTGAGCCT
____________________________________________________________
consensus ACCAACCCTTCTATACAAATTGGATCAAGAAATGCACCGTGGAGGCCAATGTTTGAGCCT
. : . : . : . : . : . :
rJMSF044H20+ TCCGTTAATACCAGTCTACCCTCTTCCTCAAGATCGAATCTTTTCGATCCTCAGTCAAGT
rJMSF044D12+ TCCGTTAATACCAGTCTACCCTCTTCCTCAAGATCGAATCTTTTCGATCCTCAGTCAAGT
rJMFF011O12+ TCCGTTAATACCAGTCTACCCTCTTCCTCAAGATCGAATCTTTTCGATCCTCAGTCAAGT
____________________________________________________________
consensus TCCGTTAATACCAGTCTACCCTCTTCCTCAAGATCGAATCTTTTCGATCCTCAGTCAAGT
. : . : . : . : . : . :
rJMSF044H20+ GCAGCCAGTCCTTTTTCTAGTAACCATAGTTTCCCAACCTACCCTTTCTCCCCTGCCATG
rJMSF044D12+ GCAGCCAGTCCTTTTTCTAGTAACCATAGTTTCCCAACCTACCCTTTCTCCCCTGCCATG
rJMFF011O12+ GCAGCCAGTCCTTTTTNTAGTAACCATAGTTTCCCAACCTACCCTTTCTCCCCTGCCATG
____________________________________________________________
consensus GCAGCCAGTCCTTTTTCTAGTAACCATAGTTTCCCAACCTACCCTTTCTCCCCTGCCATG
. : . : . : . : . : . :
rJMSF044H20+ ACCCCGCAATTATCTTCTCCCATCGGATTCTCATCCGCCCATTCTGCCCGGGAAAACAAC
rJMSF044D12+ ACCCCGCAATTATCTTCTCCCATCGGATTCTCATCCGCCCATTCTGCCCGGGAAAACAAC
rJMFF011O12+ ACCCCGCAATTATCTTCTCCCATCGGATTCTCATCCGCCCATTCTGCCCGGGAAAACAAC
____________________________________________________________
consensus ACCCCGCAATTATCTTCTCCCATCGGATTCTCATCCGCCCATTCTGCCCGGGAAAACAAC
. : . : . : . : . : . :
rJMSF044H20+ ACACCACCTCCTGCAACACGCTTCTCGCTCTACGATGATCATGTAAGACCAAATATGCAC
rJMSF044D12+ ACACCACCTCCTGCAACACGCTTCTCGCTCTACGATGATCATGTAAGACCAAATATGCAC
rJMFF011O12+ ACACCACCTCCTGCAACACGCTTCTCGCTNTACGATGATCATGTAAGACCAAATATGCAC
____________________________________________________________
consensus ACACCACCTCCTGCAACACGCTTCTCGCTCTACGATGATCATGTAAGACCAAATATGCAC
. : . : . : . : . : . :
rJMSF044H20+ AGGTAGTATCTTGCTACTGTTTTTATAGCCATGCAGTTTTAATGTCTGAATGAAGATATT
rJMSF044D12+ AGGTAGTATCTTGCTACTGTTTTTATAGCCATGCAGTTTTAATGTCTGAATGAAGATATT
rJMFF011O12+ AGGTAGTATCTTGCTACTGTTTTTATAGCCATGCAGTTTTAATGTCTGAATGAAGATATT
____________________________________________________________
consensus AGGTAGTATCTTGCTACTGTTTTTATAGCCATGCAGTTTTAATGTCTGAATGAAGATATT
. : . : . : . : . : . :
rJMSF044H20+ TTTATTTGGGTTATATATTGTCATTTATTGCAACTGGGCACTTAGGTTTATAAATGTTTT
rJMSF044D12+ TTTATTTGGGTTATATATTGTCATTTATTGCAACTGGGCACTTAGGTTTATAAATGTTTT
rJMFF011O12+ TTTATTTGGGTTATATATTGTCATTTATTGCAACTGGGCACTTAGGTTTATAAATGTTTT
____________________________________________________________
consensus TTTATTTGGGTTATATATTGTCATTTATTGCAACTGGGCACTTAGGTTTATAAATGTTTT
. : . : . : . : . : . :
rJMSF044H20+ ATAAGCAGCTGTTGTTGTATCTAAGATATATATTGGCTTGTAAACTTTTACAGTAGCTCA
rJMSF044D12+ ATAAGCAGCTGTTGTTGTATCTAAGATATATATTGGCTTGTAAACTTTTACAGTAGCTCA
rJMFF011O12+ ATAAGCAGCTGTTGTTGTATCTAAGATATATATTGGCTTGTAAACTTTTACAGTAGCTCA
____________________________________________________________
consensus ATAAGCAGCTGTTGTTGTATCTAAGATATATATTGGCTTGTAAACTTTTACAGTAGCTCA
. : . : . : . : . : . :
rJMSF044H20+ TAGAAATGCGGTTTGTAAGAAGGTAATAAACAAC
rJMSF044D12+ TAGAAATGCGGTTTGTAAGAAGGTAATAAACAAC
rJMFF011O12+ TAGAAATGCGGTTTGTAAGAAGGTAATAAACAACATATATGTATTTTTCATGTTAATAAG
____________________________________________________________
consensus TAGAAATGCGGTTTGTAAGAAGGTAATAAACAACATATATGTATTTTTCATGTTAATAAG