Contig 013636:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009B17Sequence628018406emb|CBI17573.3|1e-63unnamed protein product [Vitis vinifera]729013636 (2)emb|CDP09781.1|5e-89unnamed protein product [Coffea canephora]
JMFS075B06Sequence638013636 (2)ref|XP_011029222.1|8e-88PREDICTED: general transcription factor IIE subunit 2 [Populus euphratica]

Alignment

This contig is upended


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JMFS075B06-                                                        CCGTCGTTTGCTCCG
                      ____________________________________________________________
consensus                                                          CCGTCGTTTGCTCCG
 
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JMFS075B06-           GTTCCGGCAGTGCAGGACTTTATCTGCAGCAGCCTAGGGGAGCGCCTGACGGAGATACTC
                      ____________________________________________________________
consensus             GTTCCGGCAGTGCAGGACTTTATCTGCAGCAGCCTAGGGGAGCGCCTGACGGAGATACTC
 
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JMFS075B06-           AATAACCAATGGATTGGCAAGAGAGTCTGAATAGGTTTCAAAAGCAGCAGGAGAAGTGCC
                      ____________________________________________________________
consensus             AATAACCAATGGATTGGCAAGAGAGTCTGAATAGGTTTCAAAAGCAGCAGGAGAAGTGCC
 
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JMFS075B06-           AGTCTACCCTTACCAGTATTGCAGCTAAAGCTGGATCTTCAAAGGCAACTCCTCCCAAGG
                      ____________________________________________________________
consensus             AGTCTACCCTTACCAGTATTGCAGCTAAAGCTGGATCTTCAAAGGCAACTCCTCCCAAGG
 
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JMFS075B06-           CTGCATCCTCAACTGCTTCTGCAAATGCGAAGTCTCCTGCCCCTCCAGTCAAATTCTCTA
                      ____________________________________________________________
consensus             CTGCATCCTCAACTGCTTCTGCAAATGCGAAGTCTCCTGCCCCTCCAGTCAAATTCTCTA
 
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JMFS075B06-           ATGATACAGAAAGACTTCAACACATAAACAGCATAAGGAAAGGTCCTGTAGGAGCTCAGA
                      ____________________________________________________________
consensus             ATGATACAGAAAGACTTCAACACATAAACAGCATAAGGAAAGGTCCTGTAGGAGCTCAGA
 
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JMFS075B06-           TGAAACGTGTGATAGACCTGCTGCTGGATACTAGGCAAGCTTTTACAATAGAACAAATAA
                      ____________________________________________________________
consensus             TGAAACGTGTGATAGACCTGCTGCTGGATACTAGGCAAGCTTTTACAATAGAACAAATAA
 
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JMFS075B06-           ATGAACAATGTTACGTCGATATGAATGCCAACAAGGCTGTATTTGACAGTTTGAGAAACA
rJMFF009B17+                                                             TGAGAAACA
                      ____________________________________________________________
consensus             ATGAACAATGTTACGTCGATATGAATGCCAACAAGGCTGTATTTGACAGTTTGAGAAACA
 
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JMFS075B06-           ACCCAAAAGTCCACTATGATGGCAAGAAATTCTCTTACAAGTCGAAGCATGATCTCAAAA
rJMFF009B17+          ACCCAAAAGTCCACTATGATGGCAAGAAATTCTCTTACAAGTCGAAGCATGATCTCAAAA
                      ____________________________________________________________
consensus             ACCCAAAAGTCCACTATGATGGCAAGAAATTCTCTTACAAGTCGAAGCATGATCTCAAAA
 
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JMFS075B06-           ATAAAGATCAGTTACTGATTTTAATTAGGAAATTTCCTTGGGGTATTGCTGTCATCGATC
rJMFF009B17+          ATAAAGATCAGTTACTGATTTTAATTAGGAAATTTCCTTGGGGTATTGCTGTCATCGATC
                      ____________________________________________________________
consensus             ATAAAGATCAGTTACTGATTTTAATTAGGAAATTTCCTTGGGGTATTGCTGTCATCGATC
 
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JMFS075B06-           TCAAGGATGCATACCCAACTGTGATGGAAGACTTGCAGTCTCTGAAGGCTGGCGGGCAAA
rJMFF009B17+          TCAAGGATGCATACCCAACTGTGATGGAAGACTTGCAGTCTCTGAAGGCTGGCGGGCAAA
                      ____________________________________________________________
consensus             TCAAGGATGCATACCCAACTGTGATGGAAGACTTGCAGTCTCTGAAGGCTGGCGGGCAAA
 
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JMFS075B06-           TTTGGCTGCTGTCAAACTTCGAC                                     
rJMFF009B17+          TTTGGCTGCTGTCAAACTTCGACTCTCAGGAGGACATTGCATACCCTAATGATCCCGGGG
                      ____________________________________________________________
consensus             TTTGGCTGCTGTCAAACTTCGACTCTCAGGAGGACATTGCATACCCTAATGATCCCGGGG
 
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rJMFF009B17+          TGCGTATTAAGGTTGATGATGAACTGAAACAGCTATTCCGAGGAATTGAATTACCACGCG
                      ____________________________________________________________
consensus             TGCGTATTAAGGTTGATGATGAACTGAAACAGCTATTCCGAGGAATTGAATTACCACGCG
 
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rJMFF009B17+          ACATGCTTGACATTGAAAAAGAGCTCCAGAAGAATGGAATGAAACCTGCTACTAACACTG
                      ____________________________________________________________
consensus             ACATGCTTGACATTGAAAAAGAGCTCCAGAAGAATGGAATGAAACCTGCTACTAACACTG
 
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rJMFF009B17+          CAAAGAGGAGGGCAATGGCACATGTTCATGGCATTTCCTCCAAGCCCAAAACCAAGAAAA
                      ____________________________________________________________
consensus             CAAAGAGGAGGGCAATGGCACATGTTCATGGCATTTCCTCCAAGCCCAAAACCAAGAAAA
 
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rJMFF009B17+          AGAAGCACGAAATTAGCAAGAGGACCAAGCTTACAAACGCCCACCTTCCCGAGCTCTTTG
                      ____________________________________________________________
consensus             AGAAGCACGAAATTAGCAAGAGGACCAAGCTTACAAACGCCCACCTTCCCGAGCTCTTTG
 
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rJMFF009B17+          CAAAACTCAACTCCTCTGGTTCTTGATGTTGGATTAATCTGTTTAGGGATTATTAACCTT
                      ____________________________________________________________
consensus             CAAAACTCAACTCCTCTGGTTCTTGATGTTGGATTAATCTGTTTAGGGATTATTAACCTT
 
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rJMFF009B17+          TGTGCCAGGAAAGACCAGTAGGATCTTGACTCTATCTAGTTAGAAGACGCTTAGACCCAT
                      ____________________________________________________________
consensus             TGTGCCAGGAAAGACCAGTAGGATCTTGACTCTATCTAGTTAGAAGACGCTTAGACCCAT
 
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rJMFF009B17+          TAGTGGGTAGAATCCTCATATCTGTTCACTTGTTTAACCCTTTCGAGTAGGCTGTATTTG
                      ____________________________________________________________
consensus             TAGTGGGTAGAATCCTCATATCTGTTCACTTGTTTAACCCTTTCGAGTAGGCTGTATTTG
 
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rJMFF009B17+          AAAACAAAAACACATTATAATGTTACCACCCATGATCCGTGCTTTATGTGCTATAAAAAT
                      ____________________________________________________________
consensus             AAAACAAAAACACATTATAATGTTACCACCCATGATCCGTGCTTTATGTGCTATAAAAAT