Contig 013623:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007D02Sequence242010239 (3)ref|XP_010262557.1|1e-10PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nelumbo nucifera]749013623 (4)
JMFF008E04Sequence662013623 (4)
JMFF026P11Sequence470010239 (3)ref|XP_010262557.1|3e-27PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nelumbo nucifera]728013623 (4)
JMSF015I20Sequence442010239 (3)ref|XP_010262557.1|2e-27PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nelumbo nucifera]782013623 (4)

Alignment

This contig is upended


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rJMSF015I20+                                                  GGGCCATCAATCACAGCAAA
                      ____________________________________________________________
consensus                                                     GGGCCATCAATCACAGCAAA
 
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rJMFF008E04+                                          TTGCCTGTTTCGGTAGAGTTGGTTCATC
rJMSF015I20+          ATGGTGGCTTCAGAAGAGCTTTCTTCAACCTCTTGCCTGTTTCGGTAGAGTTGGTTCATC
rJMFF026P11+                                                 TTTCGGTAGAGTTGGTTCATC
rJMFF007D02+                                          TTGCCTGTTTCGGTAGAGTTGGTTCATC
                      ____________________________________________________________
consensus             ATGGTGGCTTCAGAAGAGCTTTCTTCAACCTCTTGCCTGTTTCGGTAGAGTTGGTTCATC
 
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rJMFF008E04+          ACATTCCAATTCTAGCTTAGGCTCTAGGATAACTCGCAGGAGTAGTAGTTCACTATCGAC
rJMSF015I20+          ACATTCCAATTCTAGCTTAGGCTCTAGGATAACTCGCAGGAGTAGTAGTTCACTATCGAC
rJMFF026P11+          ACATTCCAATTCTAGCTTAGGCTCTAGGATAACTCGCAGGAGTAGTAGTTCACTATCGAC
rJMFF007D02+          ACATTCCAATTCTAGCTTAGGCTCTAGGATAACTCGCAGGAGTAGTAGTTCACTATCGAC
                      ____________________________________________________________
consensus             ACATTCCAATTCTAGCTTAGGCTCTAGGATAACTCGCAGGAGTAGTAGTTCACTATCGAC
 
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rJMFF008E04+          CAGAAGACGCAGGGGCTGGAGTTTCGGGGCCAATGATGAACCTCAAAGGTGGTGATCTTC
rJMSF015I20+          CAGAAGACGCAGGGGCTGGAGTTTCGGGGCCAATGATGAACCTCAAAGGTGGTGATCTTC
rJMFF026P11+          CAGAAGACGCAGGGGCTGGAGTTTCGGGGCCAATGATGAACCTCAAAGGTGGTGATCTTC
rJMFF007D02+          CAGAAGACGCAGGGGCTGGAGTTTCGGGGCCAATGATGAACCTCAAAGGTGGTGATCTTC
                      ____________________________________________________________
consensus             CAGAAGACGCAGGGGCTGGAGTTTCGGGGCCAATGATGAACCTCAAAGGTGGTGATCTTC
 
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rJMFF008E04+          AATCCCCGGGAGAGATTGCTATCACGAGATGTAAATAACTAGATAATGATAATGCAATAG
rJMSF015I20+          AATCCCCGGGAGAGATTGCTATCACGAGATGTAAATAACTAGATAATGATAATGCAATAG
rJMFF026P11+          AATCCCCGGGAGAGATTGCTATCACGAGATGTAAATAACTAGATAATGATAATGCAATAG
rJMFF007D02+          AATCCCCGGGAGAGATTGCTATCACGAGATGTAAATAACTAGATAATGATAATGCAATAG
                      ____________________________________________________________
consensus             AATCCCCGGGAGAGATTGCTATCACGAGATGTAAATAACTAGATAATGATAATGCAATAG
 
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rJMFF008E04+          CGAATCTTCTGTGGCACATCCTGCTGTGGATACCGATTAACCACAAACAAAGCATTCGCG
rJMSF015I20+          CGAATCTTCTGTGGCACATCCTGCTGTGGATACCGATTAACCACAAACAAAGCATTCGCG
rJMFF026P11+          CGAATCTTCTGTGGCACATCCTGCTGTGGATACCGATTAACCACAAACAAAGCATTCGCG
rJMFF007D02+          CGAATCTTCTGTGGCACATCCTGCTGTGGATACCGATTAACCACAAACAAAGCATTCGCG
                      ____________________________________________________________
consensus             CGAATCTTCTGTGGCACATCCTGCTGTGGATACCGATTAACCACAAACAAAGCATTCGCG
 
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rJMFF008E04+          GGGACGTTGCAGAAGAGGTTTAGAAGTGATGGTTTAGTACCAGCTGTGGATAACTTTCGT
rJMSF015I20+          GGGACGTTGCAGAAGAGGTTTAGAAGTGATGGTTTAGTACCAGCTGTGGATAACTTTCGT
rJMFF026P11+          GGGACGTTGCAGAAGAGGTTTAGAAGTGATGGTTTAGTACCAGCTGTGGATAACTTTCGT
rJMFF007D02+          GGGACGTTGCAGAAGAGGTTTAGAAGTGATGGTTTAGTACCAGCTGTGGATAACTTTCGT
                      ____________________________________________________________
consensus             GGGACGTTGCAGAAGAGGTTTAGAAGTGATGGTTTAGTACCAGCTGTGGATAACTTTCGT
 
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rJMFF008E04+          GTGGAAGCTGCTGCAGAAGAGGTTTAGTGCAATAATACCTGCTGGGACTATGAACTTTCG
rJMSF015I20+          GTGGAAGCTGCTGCAGAAGAGGTTTAGTGCAATAATACCTGCTGGGACTATGAACTTTCG
rJMFF026P11+          GTGGAAGCTGCTGCAGAAGAGGTTTAGTGCAATAATACCTGCTGGGACTATGAACTTTCG
rJMFF007D02+          GTGGAAGCTGCTGCAGAAGAGGTTTAGTGCAATAATACCTGCTGGGACTATGAACTTTCG
                      ____________________________________________________________
consensus             GTGGAAGCTGCTGCAGAAGAGGTTTAGTGCAATAATACCTGCTGGGACTATGAACTTTCG
 
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rJMFF008E04+          CGTGAGAAGGTTTAGCAGTGAAGGATGACTTCAAGAACGAAAGAATCTAGGGGTTAGTGG
rJMSF015I20+          CGTGAGAAGGTTTAGCAGTGAAGGATGACTTCAAGAACGAAAGAATCTAGGGGTTAGTGG
rJMFF026P11+          CGTGAGAAGGTTTAGCAGTGAAGGATGACTTCAAGAACGAAAGAATCTAGGGGTTAGTGG
rJMFF007D02+          CGTGAGAAGGTTTAGCAGTGAAGGATGACTTCAAGAACGAAAGAATCTAGGGGTTAGTGG
                      ____________________________________________________________
consensus             CGTGAGAAGGTTTAGCAGTGAAGGATGACTTCAAGAACGAAAGAATCTAGGGGTTAGTGG
 
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rJMFF008E04+          AAGAAGAAGGTACACACAGCCTGGACTTTGCAATTAACCTGCATTTCTTTTCTTTAATTT
rJMSF015I20+          AAGAAGAAGGTACACACAGCCTGGACTTTGCAATTAACCTGCATTTCTTTTCTTTAATTT
rJMFF026P11+          AAGAAGAAGGTACACGCAGCCTGGACTTTGCAATTAACCTGCATTTCTTTTCTTTAATTT
rJMFF007D02+          AAGAAGAAGGTACACACAGCCTGGACTTTGCAATTAACCTGCATTTCTTTTCTTTAATTT
                      ____________________________________________________________
consensus             AAGAAGAAGGTACACACAGCCTGGACTTTGCAATTAACCTGCATTTCTTTTCTTTAATTT
 
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rJMFF008E04+          GATGATCCCGCATGATGATGCTAGGCCTTGCCTTTCAGCTTTAAACGTTTTTCTGTGCCG
rJMSF015I20+          GATGATCCCGCATGATGATGCTAGGCCTTGCCTTTCAGCTTTAAACGTTTTTCTGTGCCG
rJMFF026P11+          GATGATCCCGCATGATGATGCTAGGCCTTGCCTTTCAGCTTTAAACGTTTTTCTGTGCCG
rJMFF007D02+          GATGATCCCGCATGATGATGCTAGGCCTTGCCTTTCAGCTTTAAACGTTTTTCTGTGCCG
                      ____________________________________________________________
consensus             GATGATCCCGCATGATGATGCTAGGCCTTGCCTTTCAGCTTTAAACGTTTTTCTGTGCCG
 
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rJMFF008E04+          AGTAATTGAATCCTTACGAAGGATCATAAAACTTTATGATTATAGCTTTTTAAATTGTAT
rJMSF015I20+          AGTAATTGAATCCTTACGAAGGATCATAAAACTTTATGATTATAGCTTTTTAAATTGTAT
rJMFF026P11+          AGTAATTGAATCCTTACGAAGGATCATAAAACTTTATGATTATAGCTTTTTAAATTGTAT
rJMFF007D02+          AGTAATTGAATCCTTACGAAGGATCATAAAACTTTATGATTATAGCTTTTTAAATTGTAT
                      ____________________________________________________________
consensus             AGTAATTGAATCCTTACGAAGGATCATAAAACTTTATGATTATAGCTTTTTAAATTGTAT
 
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rJMFF008E04+          GATCTTTGGTGGAGCATGACAAGATGACATCT                            
rJMSF015I20+          GATCTTTGGTGGAGCATGACAAGATGACATCTTCATTCATACTTTTTAAATTCTTTTAGT
rJMFF026P11+          GATCTTTGGTGGAGCATGACAAGATGACATCTTCATTCATACTTTTTAAATTCTTTTAGT
rJMFF007D02+          GATCTTTGGTGGAGCATGACAAGATGACATCTTCATTCATACTTTTTAAATTCTTTTAGT
                      ____________________________________________________________
consensus             GATCTTTGGTGGAGCATGACAAGATGACATCTTCATTCATACTTTTTAAATTCTTTTAGT
 
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rJMSF015I20+          TGCTGGAGAAAAGTGTATTCCTTTTCTTGGGTACCTTATCTT                  
rJMFF026P11+          TGCTGGAG-AAAGTGTATTCCTTTTCTTGGGTACCTTATCTT                  
rJMFF007D02+          TGCTGGAG-AAAGTGTATTCCTTTTCTTGGGTACCTTATCTTTTCATTTTTGGATTAATA
                      ____________________________________________________________
consensus             TGCTGGAG-AAAGTGTATTCCTTTTCTTGGGTACCTTATCTTTTCATTTTTGGATTAATA