Contig 013615:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005K18Sequence463009319 (3)ref|XP_004247952.1|2e-30PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum lycopersicum]707013615 (2)
JMSF022F09Sequence689009319 (3)ref|XP_004247952.1|1e-49PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum lycopersicum]794013615 (2)ref|XP_009623176.1|2e-16PREDICTED: F-box/kelch-repeat protein At3g23880-like [Nicotiana tomentosiformis

Alignment

This contig is upended


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rJMSF022F09+ GGTGATGNAGGAGTATGGAGTT
                      ____________________________________________________________
consensus GGTGATGNAGGAGTATGGAGTT
 
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rJMSF022F09+ GCGGAATCTTGGACTAAAGTGGTGTCTTTCACGCTGTCTGATCATCATAGGGGCTATATC
                      ____________________________________________________________
consensus GCGGAATCTTGGACTAAAGTGGTGTCTTTCACGCTGTCTGATCATCATAGGGGCTATATC
 
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rJMSF022F09+ ACTGTGTTGCATATGTCTGAGAATGGCGAGGAGGTCTTGCTGAAGCTTGGAACCCAGCTT
                      ____________________________________________________________
consensus ACTGTGTTGCATATGTCTGAGAATGGCGAGGAGGTCTTGCTGAAGCTTGGAACCCAGCTT
 
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rJMSF022F09+ GCGGTTTATAATTCGAGGAATGGATCGTTTAAGCATGTCGAGTGTGTTGCCTCTCCCCGC
rJMFF005K18+ CGAGGAATGGATCGTTTAAGCATGTCGAGTGTGTTGCCTCTCCCCGC
                      ____________________________________________________________
consensus GCGGTTTATAATTCGAGGAATGGATCGTTTAAGCATGTCGAGTGTGTTGCCTCTCCCCGC
 
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rJMSF022F09+ ACTATTGAGGTTCAATCAGCTACCTATGATGAGAGCCTGGCGTTGCTGGATATTGGCCAT
rJMFF005K18+ ACTATTGAGGTTCAATCAGCTACCTATGATGAGAGCCTGGCGTTGCTGGATATTGGCCAT
                      ____________________________________________________________
consensus ACTATTGAGGTTCAATCAGCTACCTATGATGAGAGCCTGGCGTTGCTGGATATTGGCCAT
 
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rJMSF022F09+ GACAGCCAAATCTAAGCAAGAAAAGAGAGAACTAATATGAACAAAACCGAGATTGTTAAA
rJMFF005K18+ GACAGCCAAATCTAAGCAAGAAAAGAGAGAACTAATATGAACAAAACCGAGATTGTTAAA
                      ____________________________________________________________
consensus GACAGCCAAATCTAAGCAAGAAAAGAGAGAACTAATATGAACAAAACCGAGATTGTTAAA
 
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rJMSF022F09+ TTGGAGTTATTCTGCTGTTCGTGATAAAGAACTCGTAGTCCCACGCTCCTAGATGCAGAA
rJMFF005K18+ TTGGAGTTATTCTGCTGTTCGTGATAAAGAACTCGTAGTCCCACGCTCCTAGATGCAGAA
                      ____________________________________________________________
consensus TTGGAGTTATTCTGCTGTTCGTGATAAAGAACTCGTAGTCCCACGCTCCTAGATGCAGAA
 
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rJMSF022F09+ AACGAAGGTTCTATCTCAGAATCGCGGTTTTATGGCAGCAAGGAAGTGCAAGAGTAAGGG
rJMFF005K18+ AACGAAGGTTCTATCTCAGAATCGCGGTTTTATGGCAGCAAGGAAGTGCAAGAGTAAGGG
                      ____________________________________________________________
consensus AACGAAGGTTCTATCTCAGAATCGCGGTTTTATGGCAGCAAGGAAGTGCAAGAGTAAGGG
 
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rJMSF022F09+ CTTCACTCGGTTTCTTGAGTGACAGCCCAACCTTACTGCAGAAAAACCAAGATTCTGCTG
rJMFF005K18+ CTTCACTCGGTTTCTTGAGTGACAGCCCAACCTTACTGCAGAAAAACCAAGATTCTGCTG
                      ____________________________________________________________
consensus CTTCACTCGGTTTCTTGAGTGACAGCCCAACCTTACTGCAGAAAAACCAAGATTCTGCTG
 
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rJMSF022F09+ ACCAAGAATCTCAAGTTTGTGGCCTCAAACAGGTCGAAATGTTAAGAATCTAAATCGTCA
rJMFF005K18+ ACCAAGAATCTCAAGTTTGTGGCCTCAAACAGGTCGAAATGTTAAGAATCTAAATCGTCA
                      ____________________________________________________________
consensus ACCAAGAATCTCAAGTTTGTGGCCTCAAACAGGTCGAAATGTTAAGAATCTAAATCGTCA
 
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rJMSF022F09+ TCATGTCTTGGAAGTGATAAAGAATGTGTGTTTGCTGTTACATGTTGGAAATAGTATATG
rJMFF005K18+ TCATGTCTTGGAAGTGATAAAGAATGTGTGTTTGCTGTTACATGTTGGAAATAGTATATG
                      ____________________________________________________________
consensus TCATGTCTTGGAAGTGATAAAGAATGTGTGTTTGCTGTTACATGTTGGAAATAGTATATG
 
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rJMSF022F09+ AAATATGTATGTATGTAGTGTCAACTTCTGTTAGTATTCTGAGCTGTGTATATCAGATAT
rJMFF005K18+ AAATATGTATGTATGTAGTGTCAACTTCTGTTAGTATTCTGAGCTGTGTATATCAGATAT
                      ____________________________________________________________
consensus AAATATGTATGTATGTAGTGTCAACTTCTGTTAGTATTCTGAGCTGTGTATATCAGATAT
 
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rJMSF022F09+ GGAGCTGGATCAAGTTTATGTTATTGTCATTCAGTGTCCAATAATGAGCAATACAATATA
rJMFF005K18+ GGAGCTGGATCAAGTTTATGTTATTGTCATTCAGTGTCCAATAATGAGCAATACAATATA
                      ____________________________________________________________
consensus GGAGCTGGATCAAGTTTATGTTATTGTCATTCAGTGTCCAATAATGAGCAATACAATATA
 
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rJMSF022F09+ GTGATCCAGCATTCACATTAGTGTTCAACAATCAG
rJMFF005K18+ GTGATCCAGCATTCACATTAGTGTTCAACAATCAGTAAAACTACGCAATTGATTATTTTG
                      ____________________________________________________________
consensus GTGATCCAGCATTCACATTAGTGTTCAACAATCAGTAAAACTACGCAATTGATTATTTTG
 
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rJMFF005K18+ TTTTGTATTCACAAGTTCCTTTCAAATACTGTAATCGCACAGTATTAACATATTAGGATT
                      ____________________________________________________________
consensus TTTTGTATTCACAAGTTCCTTTCAAATACTGTAATCGCACAGTATTAACATATTAGGATT