clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF004G02 | Sequence | 575 | 003468 (3) | ref|XP_004253096.1| | 4e-46 | PREDICTED: far upstream element-binding protein 2 [Solanum lycopersicum] | 693 | 013606 (3) | ref|XP_010097084.1| | 7e-08 | Far upstream element-binding protein 2 [Morus notabilis] gb|EXB66885.1| Far upst |
JMFN018K06 | Sequence | 479 | 013606 (3) | ref|XP_009589045.1| | 5e-05 | PREDICTED: far upstream element-binding protein 1-like [Nicotiana tomentosiform | |||||
JMSF039J01 | Sequence | 606 | 003813 (6) | ref|XP_004253096.1| | 1e-41 | PREDICTED: far upstream element-binding protein 2 [Solanum lycopersicum] | 871 | 013606 (3) | emb|CDP08239.1| | 7e-14 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF039J01+ CAGGTCAGCCAAATCCTGTTTCCTGGATATGATCAGCAACAGGGTTATAATTCA
____________________________________________________________
consensus CAGGTCAGCCAAATCCTGTTTCCTGGATATGATCAGCAACAGGGTTATAATTCA
. : . : . : . : . : . :
rJMSF039J01+ ACAACTGGGTATAGTAATACTTCCAACACAGCAGCAGCAGATGGCCACACGCCTTCATTC
____________________________________________________________
consensus ACAACTGGGTATAGTAATACTTCCAACACAGCAGCAGCAGATGGCCACACGCCTTCATTC
. : . : . : . : . : . :
rJMSF039J01+ GGGACCCAGAGTGATACAAGTCAAGCACCTCCAAATCAGTCAGCAGCCAGCCAACCTGGG
____________________________________________________________
consensus GGGACCCAGAGTGATACAAGTCAAGCACCTCCAAATCAGTCAGCAGCCAGCCAACCTGGG
. : . : . : . : . : . :
rJMSF039J01+ TACCATACTTCCCAGCATCCTAGCCCTAATGCCAATTACCAGCATCAAGGAACAACTCAG
____________________________________________________________
consensus TACCATACTTCCCAGCATCCTAGCCCTAATGCCAATTACCAGCATCAAGGAACAACTCAG
. : . : . : . : . : . :
rJMSF039J01+ CCAGGGTATGGCATACCAACTTCACAAGGTGGATATGGGACTCAGCCACCTGCATATGGC
rJMFF004G02+ CAAGGTGGATATGGGACACAGCCACCTGCCTATGGC
____________________________________________________________
consensus CCAGGGTATGGCATACCAACTTCACAAGGTGGATATGGGACTCAGCCACCTGCCTATGGC
. : . : . : . : . : . :
rJMSF039J01+ ACCAATTATGGGCAGCCCCCGTCTCAAAAGCCCCCGACTAGTCAACCAGCTTACGGGCAG
rJMFF004G02+ AACAACTATGGACAACCCCCATCTCAAAAGCCTCCAACTAGTCAACCAGCTTACGG---T
____________________________________________________________
consensus ACCAATTATGGGCAGCCCCCGTCTCAAAAGCCTCCGACTAGTCAACCAGCTTACGGGCAT
. : . : . : . : . : . :
rJMSF039J01+ CAGCCGCAACAGTCACCTAGTGCCCAGGGAGGTTATGCACAGCCCCCTCAGGTATATCCT
rJMFF004G02+ CAGCCCCAACAGTCACCTAGTGCCCAGGGAGGTTATGCACAGCCCCCTCAGGTATATCCA
____________________________________________________________
consensus CAGCCGCAACAGTCACCTAGTGCCCAGGGAGGTTATGCACAGCCCCCTCAGGTATATCCT
. : . : . : . : . : . :
rJMSF039J01+ CACTCTCAGCCTTTACCTGCTGTAACTGGTTATTCTCAGCCTGATTCTGGTTCCCAGCGT
rJMFF004G02+ CACTCTCAGCCTTCACCTACTCTATCTGGTTATTCTCAGCCTGATTCTGGTTCTCAGCGT
____________________________________________________________
consensus CACTCTCAGCCTTTACCTGCTGTATCTGGTTATTCTCAGCCTGATTCTGGTTCTCAGCGT
. : . : . : . : . : . :
rJMSF039J01+ CCTACCTCTACTGGATATGGT------GCAACCCAACCGGGTTATGGCCCCCCAGCCTAT
JMFN018K06- CAACCGGGTTATGGCCCCCCACCCTAT
rJMFF004G02+ GCTCCCTCTACTGGATATGGTGCCCCGGCAAGTCAACCGGGTTATGGCCCTCCATCGTAT
____________________________________________________________
consensus GCTCCCTCTACTGGATATGGTGCCCCGGCAAGTCAACCGGGTTATGGCCCCCCATCCTAT
. : . : . : . : . : . :
rJMSF039J01+ GGAGCTCCACCAATGACTCAATCGGGAGTGTCATACAATAGTGGGTATGGTGGTAATAGT
JMFN018K06- GGGGCGCCACAGATGACTCAATCAGGAGTGCCATACAATAGTGGTTATGGTGGTAGTGGT
rJMFF004G02+ GGGGCACCACAGATGACTCAATCAGGAGTGCCATACAATAGTGGATATGGTGGTAGTGGT
____________________________________________________________
consensus GGGGCTCCACAGATGACTCAATCAGGAGTGCCATACAATAGTGGTTATGGTGGTAGTGGT
. : . : . : . : . : . :
rJMSF039J01+ TATTCTCAGCCTTCAGCATACTCCACCGATGGAAG---TGGTGGTGGTGCACGAGCAACA
JMFN018K06- TATTCCCAGGCTTCAGCATACTCCACTGATGGAAGTGCTGGTGGTGGTGCACGGGCGAGC
rJMFF004G02+ TATTCCCAGGCTTCAGCATACTCCACTGATGGAAGTGGTGGTGGTGGTGCACCTGCGAGC
____________________________________________________________
consensus TATTCCCAGGCTTCAGCATACTCCACTGATGGAAGTGGTGGTGGTGGTGCACGTGCGAGC
. : . : . : . : . : . :
rJMSF039J01+ TATGATACAGCACCAACTTCTCAGTCTTCCCAGCCCACAGGGTCGGCTAAAACCTCTCCA
JMFN018K06- TATGATACAGCACCAACTTCTCAGTCTTCCCAGCCCACTGGGTCAGCTAAAACCTCTCCA
rJMFF004G02+ TATGATACAGCACCAACTTCTCAGTCCTCCCAGCCCACTGGGTCGGCAAAAACCTCTCCA
____________________________________________________________
consensus TATGATACAGCACCAACTTCTCAGTCTTCCCAGCCCACTGGGTCGGCTAAAACCTCTCCA
. : . : . : . : . : . :
rJMSF039J01+ GAGAGTTGAT
JMFN018K06- CAGAGTTGATTT
rJMFF004G02+ CAGAGTTGATATCTTTGACTTAAATGGTGGTTATGAATTTTGCATGTACTTTGGTTATGT
____________________________________________________________
consensus CAGAGTTGATTTCTTTGACTTAAATGGTGGTTATGAATTTTGCATGTACTTTGGTTATGT
. : . : . : . : . : . :
rJMFF004G02+ TCTGCATTTTAGTTTCTTGATCCTTTGAATGTAGAATTAATTTGTTGTGATATCTGTTTT
____________________________________________________________
consensus TCTGCATTTTAGTTTCTTGATCCTTTGAATGTAGAATTAATTTGTTGTGATATCTGTTTT
. : . : . : . : . : . :
rJMFF004G02+ CTTATCTTAACTCTAATTGCAGTATGACTCTATGTTTCATAATTTGTGGTTCTCAATCTA
____________________________________________________________
consensus CTTATCTTAACTCTAATTGCAGTATGACTCTATGTTTCATAATTTGTGGTTCTCAATCTA
. : . : . : . : . : . :
rJMFF004G02+ TGTTTATTCTTGTAAGGGAAAAAGGGTCAAATAGATCCAAAAACATTATAGAAAGAGCAA
____________________________________________________________
consensus TGTTTATTCTTGTAAGGGAAAAAGGGTCAAATAGATCCAAAAACATTATAGAAAGAGCAA