| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003E03 | Sequence | 603 | 008989 (3) | ref|XP_004230541.1| | 2e-99 | PREDICTED: methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial | 688 | 013598 (2) | gb|KDO44164.1| | 5e-118 | hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis] gb|KDO44165.1| |
| JMSF013G10 | Sequence | 545 | 008989 (3) | ref|XP_004230541.1| | 9e-57 | PREDICTED: methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial | 795 | 013598 (2) | ref|XP_007042801.1| | 3e-111 | Aldehyde dehydrogenase 6B2 [Theobroma cacao] gb|EOX98632.1| Aldehyde dehydrogena |
This contig is upended
. : . : . : . : . : . :
rJMSF013G10+ TTTGGTGCAGCCGGACAAAGATGCATGGCGCTAAGTACAGTGGT
____________________________________________________________
consensus TTTGGTGCAGCCGGACAAAGATGCATGGCGCTAAGTACAGTGGT
. : . : . : . : . : . :
rJMSF013G10+ GTTTGNTGGAGAATCAAAGTCATGGATAGAGGAATTGGTGGAACGTGCAAAAACCCTTAA
____________________________________________________________
consensus GTTTGNTGGAGAATCAAAGTCATGGATAGAGGAATTGGTGGAACGTGCAAAAACCCTTAA
. : . : . : . : . : . :
rJMSF013G10+ AGTAAATGCCGGAACAGAACCTGATGCCGACCTTGGACCAGTTATTAGTAAACAGGCAAA
rJMFF003E03+ TTGGACCAGTTATTAGTAAACAGGCAAA
____________________________________________________________
consensus AGTAAATGCCGGAACAGAACCTGATGCCGACCTTGGACCAGTTATTAGTAAACAGGCAAA
. : . : . : . : . : . :
rJMSF013G10+ AGTCCGAATATGTAAATTGATTCAAAGTGGTGTTGATAGTGGGGCTAAATTATTGCTCGA
rJMFF003E03+ AGTCCGAATATGTAAATTGATTCAAAGTGGTGTTGATAGTGGGGCTAAATTATTGCTCGA
____________________________________________________________
consensus AGTCCGAATATGTAAATTGATTCAAAGTGGTGTTGATAGTGGGGCTAAATTATTGCTCGA
. : . : . : . : . : . :
rJMSF013G10+ TGGAAG-AACATTGTGGTACCAGGCTACGAACAGGGTAATTTTATTGGCCCCACCATCTT
rJMFF003E03+ TGGAAGAAACATTGTGGTACCAGGCTACGAACAGGGTAATTTTATTGGCCCCACCATCTT
____________________________________________________________
consensus TGGAAGAAACATTGTGGTACCAGGCTACGAACAGGGTAATTTTATTGGCCCCACCATCTT
. : . : . : . : . : . :
rJMSF013G10+ GTCTGATGTTACTGCCGATATGGAGTGTTATAAGGAGGAAATCTTCGGGCCTGTTCTCAT
rJMFF003E03+ GTCTGATGTTACTGCCGATATGGAGTGTTATAAGGAGAAAATCTTCGGGCCTGTTCTCAT
____________________________________________________________
consensus GTCTGATGTTACTGCCGATATGGAGTGTTATAAGGAGGAAATCTTCGGGCCTGTTCTCAT
. : . : . : . : . : . :
rJMSF013G10+ TTGTATGCAGGCTGACAGCTTAGAAGAGGCGATAAGAATTGTCAATAGAAACAAATATGG
rJMFF003E03+ TTGTATGCAGGCTGACAGCTTAGAAGAGGCGATAAGAATTGTCAATAGAAACAAATATGG
____________________________________________________________
consensus TTGTATGCAGGCTGACAGCTTAGAAGAGGCGATAAGAATTGTCAATAGAAACAAATATGG
. : . : . : . : . : . :
rJMSF013G10+ AAACGGTGCTGCTATATTCACTACATCTGGCATAGCTGCGAGGAAATTCCAAACCGAGAT
rJMFF003E03+ AAACGGTGCTGCTATATTCACTACATCTGGCATAGCTGCGAGGAAATTCCAAACCGAGAT
____________________________________________________________
consensus AAACGGTGCTGCTATATTCACTACATCTGGCATAGCTGCGAGGAAATTCCAAACCGAGAT
. : . : . : . : . : . :
rJMSF013G10+ CGAGGCAGGGCAGGTTGGCATCAACGTTCCCATTCCGGTTCCTCTACCCTTCTTCTCCTT
rJMFF003E03+ CGAGGCAGGGCAGGTTGGCATCAACGTTCCCATTCCGGTTCCTCTACCCTTCTTCTCCTT
____________________________________________________________
consensus CGAGGCAGGGCAGGTTGGCATCAACGTTCCCATTCCGGTTCCTCTACCCTTCTTCTCCTT
. : . : . : . : . : . :
rJMSF013G10+ CACAGGCTCCAAGGCTTCTTTTGCTGGAGACCTCAACTTCTACGGCAAAGCGGGGGTTAA
rJMFF003E03+ CACAGGCTCCAAGGCTTCTTTTGCTGGAGACCTCAACTTCTACGGCAAAGCGGGGGTTAA
____________________________________________________________
consensus CACAGGCTCCAAGGCTTCTTTTGCTGGAGACCTCAACTTCTACGGCAAAGCGGGGGTTAA
. : . : . : . : . : . :
rJMSF013G10+ CTTTTACACACAGATCAAGACTATCACCCAGCAATGGAAGGATTTACCAGGTGGCTCTGG
rJMFF003E03+ CTTTTACACACAGATCAAGACTATCACCCAGCAATGGAAGGATTTACCAGGTGGCTCTGG
____________________________________________________________
consensus CTTTTACACACAGATCAAGACTATCACCCAGCAATGGAAGGATTTACCAGGTGGCTCTGG
. : . : . : . : . : . :
rJMSF013G10+ AGTATCTCTTGCAATGCCAACTTCTCAGAAATAGATAAATTAAACTATAGTTTCACTGTG
rJMFF003E03+ AGTATCTCTTGCAATGCCAACTTCTCAGAAATAGATAAATTAAACTATAGTTTCACTGTG
____________________________________________________________
consensus AGTATCTCTTGCAATGCCAACTTCTCAGAAATAGATAAATTAAACTATAGTTTCACTGTG
. : . : . : . : . : . :
rJMSF013G10+ GGGTTTTTACACTCTGATTATCACAAAACAATCTGTTGGTTCCATTTGAGGTTTTTATTT
rJMFF003E03+ GGGTTTTTACACTCTGATTATCACAAAACAATCTGTTGGTTCCATTTGAGGTTTTTATTT
____________________________________________________________
consensus GGGTTTTTACACTCTGATTATCACAAAACAATCTGTTGGTTCCATTTGAGGTTTTTATTT
. : . : . : . : . : . :
rJMSF013G10+ GCCTTGTAAACCAAAGGATGGAAGAATGTTT
rJMFF003E03+ GCCTTGTAAACCAAAGGATGGAAGAATGTTTTGTCTGGTTTTTATTCAATAAGTCAAATC
____________________________________________________________
consensus GCCTTGTAAACCAAAGGATGGAAGAATGTTTTGTCTGGTTTTTATTCAATAAGTCAAATC