Contig 013590:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001C13Sequence457012805 (6)424013590 (2)
JMFF013P24Sequence595012805 (6)ref|XP_002526718.1|8e-36nucleic acid binding protein, putative [Ricinus communis] gb|EEF35632.1| nucleic780013590 (2)ref|XP_009618285.1|2e-57PREDICTED: zinc finger CCCH domain-containing protein 30 [Nicotiana tomentosifo

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF013P24+ TGGAGTTCAATCTTCA
                      ____________________________________________________________
consensus TGGAGTTCAATCTTCA
 
. : . : . : . : . : . :
rJMFF013P24+ GGGAGAATGTCTCCTCGAATTATGGACCCTATCTCACCACTGAGTTCCCGTGTCTCACTA
                      ____________________________________________________________
consensus GGGAGAATGTCTCCTCGAATTATGGACCCTATCTCACCACTGAGTTCCCGTGTCTCACTA
 
. : . : . : . : . : . :
rJMFF013P24+ CTTGCTCAACGTGAGAAGCAACAGCAATTTAGGAGCCTCAGTTCACGTGACCTTGGCTCC
                      ____________________________________________________________
consensus CTTGCTCAACGTGAGAAGCAACAGCAATTTAGGAGCCTCAGTTCACGTGACCTTGGCTCC
 
. : . : . : . : . : . :
rJMFF013P24+ AATGCCTCCGGTCCTGTTGATTTTTCTTCAGATTCTTGGTCAAAATGGGGGCCTTCTGAA
                      ____________________________________________________________
consensus AATGCCTCCGGTCCTGTTGATTTTTCTTCAGATTCTTGGTCAAAATGGGGGCCTTCTGAA
 
. : . : . : . : . : . :
rJMFF013P24+ GGAAAGCCTGACTGGGCAGTAAAGTCCGAGGAATTCGGTAAGCTTAGGAGATCATCATCA
                      ____________________________________________________________
consensus GGAAAGCCTGACTGGGCAGTAAAGTCCGAGGAATTCGGTAAGCTTAGGAGATCATCATCA
 
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rJMFF013P24+ TTTGAGCTAGCAAACAATGGAGAGGAGCCTGATCTCTCATGGGTTCAGTCTCTTGTCAAA
                      ____________________________________________________________
consensus TTTGAGCTAGCAAACAATGGAGAGGAGCCTGATCTCTCATGGGTTCAGTCTCTTGTCAAA
 
. : . : . : . : . : . :
rJMFF013P24+ GAATCTCCACAAGAAATGAAAGATAAATCAAGTCCACACATTGCAGGATTTGGTGCAACT
rJMFF001C13+ T
                      ____________________________________________________________
consensus GAATCTCCACAAGAAATGAAAGATAAATCAAGTCCACACATTGCAGGATTTGGTGCAACT
 
. : . : . : . : . : . :
rJMFF013P24+ TCAGCTGAGGGATCATCATCAAATTCCCAGATAGATCAAATCGATCAATCTACATTGAAT
rJMFF001C13+ TCAGCTGAGGGATCATCATCAAATTCCCAGATAGATCAAATCGATCAATCTACATTGAAT
                      ____________________________________________________________
consensus TCAGCTGAGGGATCATCATCAAATTCCCAGATAGATCAAATCGATCAATCTACATTGAAT
 
. : . : . : . : . : . :
rJMFF013P24+ GCATGGCTGGAGCAGATGCATCTTGATCAGTTGATGGCTCAGTAAACCCCCTCGAACTTC
rJMFF001C13+ GCATGGCTGGAGCAGATGCATCTTGATCAGTTGATGGNTCAGTAAACCCCCTCGAACTTC
                      ____________________________________________________________
consensus GCATGGCTGGAGCAGATGCATCTTGATCAGTTGATGGCTCAGTAAACCCCCTCGAACTTC
 
. : . : . : . : . : . :
rJMFF013P24+ CCTCCTTTTCATTAGAGTTTTTCCTGAAGCAGTTTGGGACCTATCTAGCTAGGTAACTTA
rJMFF001C13+ CCTCCTTTTCATTAGAGTTTTTCCTGAAGCAGTTTGGGACCTATCTAGNTAGGTANNTTA
                      ____________________________________________________________
consensus CCTCCTTTTCATTAGAGTTTTTCCTGAAGCAGTTTGGGACCTATCTAGCTAGGTAACTTA
 
. : . : . : . : . : . :
rJMFF013P24+ ATCCAAGAAGCAGCTAACGAAGAAAGGAGGCCCGAAAAATGGGAAGATATTTATTATTTC
rJMFF001C13+ ATCCAAGAAGCAGCTAACGAAGAAAGGAGGCCCGAAAAATGGGAAGATATTTATTATTTC
                      ____________________________________________________________
consensus ATCCAAGAAGCAGCTAACGAAGAAAGGAGGCCCGAAAAATGGGAAGATATTTATTATTTC
 
. : . : . : . : . : . :
rJMFF013P24+ TTTAGCTATTTAATTTTATTAATTGAAGCAGCAGCAGATAGTAGAAGAAGATTACTGGGT
rJMFF001C13+ TTTAGCTATTTAATTTTATTAATTGAAGCAGCAGCAGATAGTAGAAGAAGATTACTGGGT
                      ____________________________________________________________
consensus TTTAGCTATTTAATTTTATTAATTGAAGCAGCAGCAGATAGTAGAAGAAGATTACTGGGT
 
. : . : . : . : . : . :
rJMFF013P24+ TATATCTATGAATCATGACCCACCCAGTCTACTAGGGCCATTTTTCTCCAATATTTTTAA
rJMFF001C13+ TATATNTATGAATCATGACCCACCCAGTCTACTAGGGCCATTTTTCTCCAATATTTTTAA
                      ____________________________________________________________
consensus TATATCTATGAATCATGACCCACCCAGTCTACTAGGGCCATTTTTCTCCAATATTTTTAA
 
. : . : . : . : . : . :
rJMFF013P24+ TTGTAGGTATGATTAGAATGATATTTCATTTTTCATATGGACAT
rJMFF001C13+ TTGTAGGTATGATTAGAATGATATTTCATTTTTCATATGGACATTGACANNAAGTTATTG
                      ____________________________________________________________
consensus TTGTAGGTATGATTAGAATGATATTTCATTTTTCATATGGACATTGACANNAAGTTATTG