Contig 013588:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFN018P19+                    ACAGAAATCAGGAAGAGTTGGGTGAAGGAGGTAGCGGTTCTCGAAGTTAGT
JMFN004E09+                                     TTGGGTGAAGGAGGTAGCGGTTCTCGAAGTTAGT
rJMSF052N16-                                            AGGAGGTAGCGGTTCTCGAAGTTAGT
                      ____________________________________________________________
consensus                      ACAGAAATCAGGAAGAGTTGGGTGAAGGAGGTAGCGGTTCTCGAAGTTAGT
 
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JMFN018P19+           TAATTCACAGAAGCCAATGAGACTTAGCATCAAAACATGCTTTTTTCCCAGCTGGCGATT
JMFN004E09+           TAATTCACAGAAGCCAATGAGACTTAGCATCAAAACATGCTTTTTTCCCAGCTGGCGATT
rJMSF052N16-          TAATTCACAGAAGCCAATGAGACTTAGCATCAAAACATGCTTTTTTCCCAGCTGGCGATT
                      ____________________________________________________________
consensus             TAATTCACAGAAGCCAATGAGACTTAGCATCAAAACATGCTTTTTTCCCAGCTGGCGATT
 
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JMFN018P19+           CCAACCGCAGCACGAGGCCCCCTTTGCTGCAACGCTCCAATTTTTCCAGCTGTTTCGCAT
JMFN004E09+           CCAACCGCAGCACGAGGCCCCCTTTGCTGCAACGCTCCAATTTTTCCAGCTGTTTCGCAT
rJMSF052N16-          CCAACCGCAGCACGAGGCCCCCTTTGCTGCAACGCTCCAATTTTTCCAGCTGTTTCGCAT
                      ____________________________________________________________
consensus             CCAACCGCAGCACGAGGCCCCCTTTGCTGCAACGCTCCAATTTTTCCAGCTGTTTCGCAT
 
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JMFN018P19+           TAAAACAAAGCCTCGGCGCACTTTTAATGACCTAACCTACACCCCTCACCGGCGGCGCAC
JMFN004E09+           TAAAACAAAGCCTCGGCGCACTTTTAATGACCTAACCTACACCCCTCACCGGCGGCGCAC
rJMSF052N16-          TAAAACAAAGCCTCGGCGCACTTTTAATGACCTAACCTACACCCCTCACCGGCGGCGCAC
                      ____________________________________________________________
consensus             TAAAACAAAGCCTCGGCGCACTTTTAATGACCTAACCTACACCCCTCACCGGCGGCGCAC
 
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JMFN018P19+           AATAGTAACCTTCTGTTCACAAAATTTTACAGCCTACAAATATCTCCATCATACACAACG
JMFN004E09+           AATAGTAACCTTCTGTTCACAAAATTTTACAGCCTACAAATATCTCCATCATACACAACG
rJMSF052N16-          AATAGTAACCTTCTGTTCACAAAATTTTACAGCCTACAAATATCTCCATCATACACAACG
JMSF052N16+                                                        CCATCATACACAACG
                      ____________________________________________________________
consensus             AATAGTAACCTTCTGTTCACAAAATTTTACAGCCTACAAATATCTCCATCATACACAACG
 
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JMFN018P19+           GTAAAAAAAAATGGAGTAATATAACTTTTACAAAGGCGCACGGGAGGTAAAATAAAAAAG
JMFN004E09+           GTAAAAAAAAATGGAGTAATATAACTTTTACAAAGGCGCACGGGAGGTAAAATAAAAAAG
rJMSF052N16-          GTAAAAAAAAATGGAGTAATATAACTTTTACAAAGGCGCACGGGAGGTAAAATAAAAAAG
JMSF052N16+           GTAAAAAAAAATGGAGTAATATAACTTTTACAAAGGCGCACGGGAGGTAAAATAAAAAAG
                      ____________________________________________________________
consensus             GTAAAAAAAAATGGAGTAATATAACTTTTACAAAGGCGCACGGGAGGTAAAATAAAAAAG
 
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JMFN018P19+           AAAATTAACAGGTGTGGTAAAAAAAATCTGATGTCGGTGGGAGAGCACTGGCTCCGGTGA
JMFN004E09+           AAAATTAACAGGTGTGGTAAAAAAAATCTGATGTCGGTGGGAGAGCACTGGCTCCGGTGA
rJMSF052N16-          AAAATTAACAGGTGTGGTAAAAAAAATCTGATGTCGGTGGGAGAGCACTGGCTCCGGTGA
JMSF052N16+           AAAATTAACAGGTGTGGTAAAAAAAATCTGATGTCGGTGGGAGAGCACTGGCTCCGGTGA
                      ____________________________________________________________
consensus             AAAATTAACAGGTGTGGTAAAAAAAATCTGATGTCGGTGGGAGAGCACTGGCTCCGGTGA
 
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JMFN018P19+           CGAAACTCCGGCGACGCAGTAGATAAATAGATACAGAGAGAGAGATAGAGAGAGAAGCAG
JMFN004E09+           CGAAACTCCGGCGACGCAGTAGATAAATAGATACAGAGAGAGAGATAGAGAGAGAAGCAG
rJMSF052N16-          CGAAACTCCGGCGACGCAGTAGATAAATAGATACAGAGAGAGAGATAGAGAGAGAAGCAG
JMSF052N16+           CGAAACTCCGGCGACGCAGTAGATAAATAGATACAGAGAGAGAGATAGAGAGAGAAGCAG
                      ____________________________________________________________
consensus             CGAAACTCCGGCGACGCAGTAGATAAATAGATACAGAGAGAGAGATAGAGAGAGAAGCAG
 
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JMFN018P19+           ATTATACATCTTAGAAATCGGCAATTTTCCGGTGAAACCTGCGCTTTGAGTTATCCATGT
JMFN004E09+           ATTATACATCTTAGAAATCGGCAATTTTCCGGTGAAACCTGCGCTTTGAGTTATCCATGT
rJMSF052N16-          ATTATACATCTTAGAAATCGGCAATTTTCCAGTGAAACCTGCGCTTTGAGTTATCCATGT
JMSF052N16+           ATTATACATCTTAGAAATCGGCAATTTTCCAGTGAAACCTGCGCTTTGAGTTATCCATGT
                      ____________________________________________________________
consensus             ATTATACATCTTAGAAATCGGCAATTTTCCAGTGAAACCTGCGCTTTGAGTTATCCATGT
 
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JMFN018P19+           CAATCTCGCGGAGGTTCCTCAAGCTTCGAATCGCCAGAACGTTGCTCTTCTCTATCGCTG
JMFN004E09+           CAATCTCGCGGAGGTTCCTCAAGCTTCGAATCGCCAGAACGTTGCTCTTCTCTATCGCTG
rJMSF052N16-          CAATCTCGCGGAGGTTCCTCAAGCTTCGAATCGCCAGAACGTTGCTCTTCTCTATCGCTG
JMSF052N16+           CAATCTCGCGGAGGTTCCTCAAGCTTCGAATCGCCAGAACGTTGCTCTTCTCTATCGCTG
                      ____________________________________________________________
consensus             CAATCTCGCGGAGGTTCCTCAAGCTTCGAATCGCCAGAACGTTGCTCTTCTCTATCGCTG
 
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JMFN018P19+           CAACACCGGATTC                                               
JMFN004E09+           CAACACCGGATTC                                               
rJMSF052N16-          CAACACCGGATTCTATAGGCTTAGATAATCCGTTGAAACCATTAAACTGAGCTAAATCAT
JMSF052N16+           CAACACCGGATTCTATAGGCTTAGATAATCCGTTGAAACCATTAAACTGAGCTAAATCAT
                      ____________________________________________________________
consensus             CAACACCGGATTCTATAGGCTTAGATAATCCGTTGAAACCATTAAACTGAGCTAAATCAT
 
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rJMSF052N16-          TCTCGGTAGGATGGTGGGAGGAGAGGTAGAGGATGAGGTAGCAAAGGACGGTGAGGAGCG
JMSF052N16+           TCTCGGTAGGATGGTGGGAGGAGAGGTAGAGGATGAGGTAGCAAAGGACGGTGAGGAGCG
                      ____________________________________________________________
consensus             TCTCGGTAGGATGGTGGGAGGAGAGGTAGAGGATGAGGTAGCAAAGGACGGTGAGGAGCG
 
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rJMSF052N16-          GGATTAGGTGCACGTATTTCTGGGCCTTACCGAGACGCCTCAGCGACTTGCGCTCTTCGT
JMSF052N16+           GGATTAGGTGCACGTATTTCTGGGCCTTACCGAGACGCCTCAGCGACTTGCGCTCTTCGT
                      ____________________________________________________________
consensus             GGATTAGGTGCACGTATTTCTGGGCCTTACCGAGACGCCTCAGCGACTTGCGCTCTTCGT
 
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rJMSF052N16-          CTTCGTGGAAGGTGGCTACAGAGCCGCCGTCGTCTCGTGCTTCCACGATGACTCCATGAG
JMSF052N16+           CTTCGTGGAAGGTGGCTACAGAGCCGCCGTCGTCTCGTGCTTCCACGATGACTCCATGAG
                      ____________________________________________________________
consensus             CTTCGTGGAAGGTGGCTACAGAGCCGCCGTCGTCTCGTGCTTCCACGATGACTCCATGAG
 
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rJMSF052N16-          AGTTGTTGAGGTGCTTTGATCCCGGCG                                 
JMSF052N16+           AGTTGTTGAGGTGCTTTGATCCCGGCGACCCTAGTGATTGCCTATGCATTGCTCCAGAGA
                      ____________________________________________________________
consensus             AGTTGTTGAGGTGCTTTGATCCCGGCGACCCTAGTGATTGCCTATGCATTGCTCCAGAGA
 
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JMSF052N16+           GAGAAACAAAGGGAGAGAGAGTAGTTAACAGAGTAAATGAGTGAGAGTTTGCTGAGTCTC
                      ____________________________________________________________
consensus             GAGAAACAAAGGGAGAGAGAGTAGTTAACAGAGTAAATGAGTGAGAGTTTGCTGAGTCTC