| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF021G09 | Sequence | 656 | 013563 (8) | ref|XP_004230965.1| | 7e-66 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Solanum | 712 | 013563 (8) | ref|XP_004230965.1| | 1e-65 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Solanum |
| JMSF024M13 | Sequence | 313 | 013563 (8) | 265 | 013563 (8) | ||||||
| JMSF027C13 | Sequence | 290 | 013563 (8) | 772 | 002953 (11) | ref|XP_011070403.1| | 357 | PREDICTED: uncharacterized protein LOC105156068 [Sesamum indicum] | |||
| JMSF049P18 | Sequence | 416 | 013563 (8) | ref|XP_004230965.1| | 3e-67 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Solanum | 756 | 018352 | ref|XP_006361810.1| | 9e-49 | PREDICTED: dnaJ homolog subfamily C member 3 homolog [Solanum tuberosum] |
| JMSF050G09 | Sequence | 650 | 013563 (8) | ref|XP_004230965.1| | 7e-66 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Solanum | 697 | 013563 (8) | ref|XP_004230965.1| | 1e-65 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Solanum |
This contig is upended
. : . : . : . : . : . :
JMSF024M13+ TTTTTTTTTTATAAGG
rJMSF021G09- ATAAGG
____________________________________________________________
consensus TTTTTTTTTTATAAGG
. : . : . : . : . : . :
JMSF024M13+ AAAGCAACACCACATATATGTTCCAAAATGATTCTTTACAAATTTAAAGGCTGCTTGCCA
JMSF050G09+ AAGGCTGCTTGCCA
rJMSF050G09- AAATGATTCTTTACAAATTTAAAGGCTGCTTGCCA
rJMSF024M13- AATTTAAAGGCTGCTTGCCA
JMSF027C13+ AAATGATTCTTTACAAATTTAAAGGCTGCTTGCCA
rJMSF021G09- AAAGCAACACCACATATATGTTCCAAAATGATTCTTTACAAATTTAAAGGCTGCTTGCCA
JMSF021G09+ AAAGGCTGCTTGCCA
____________________________________________________________
consensus AAAGCAACACCACATATATGTTCCAAAATGATTCTTTACAAATTTAAAGGCTGCTTGCCA
. : . : . : . : . : . :
JMSF024M13+ AATATCATTCAAGGAACCTTTTTAAGTTTAAACCAATGACTACCAAGGAAAGAAAATCTA
JMSF050G09+ AATATCATTCAAGGAACCTTTTTAAGTTTAAACCAATGACTACCAAGGAAAGAAAATCTA
rJMSF050G09- AATATCATTCAAGGAACCTTTTTAAGTTTAAACCAATGACTACCAAGGAAAGAAAATCTA
rJMSF024M13- AATATCATTCAAGGAACCTTTTTAAGTTTAAACCAATGACTACCAAGGAAAGAAAATCTA
JMSF027C13+ AATATCATTCAAGGAACCTTTTTAAGTTTAAACCAATGACTACCAAGGAAAGAAAATCTA
rJMSF021G09- AATATCATTCAAGGAACCTTTTTAAGTTTAAACCAATGACTACCAAGGAAAGAAAATCTA
JMSF021G09+ AATATCATTCAAGGAACCTTTTTAAGTTTAAACCAATGACTACCAAGGAAAGAAAATCTA
____________________________________________________________
consensus AATATCATTCAAGGAACCTTTTTAAGTTTAAACCAATGACTACCAAGGAAAGAAAATCTA
. : . : . : . : . : . :
JMSF024M13+ GTTAAACCACAAGTGCAAAAGCTGCCTCAACAGCAAACCAGTTAAGTATCAACTCTGTGA
JMSF050G09+ GTTAAACCACAAGTGCAAAAGCTGCCTCAACAGCAAACCAGTTAAGTATCAACTCTGTGA
rJMSF050G09- GTTAAACCACAAGTGCAAAAGCTGCCTCAACAGCAAACCAGTTAAGTATCAACTCTGTGA
rJMSF024M13- GTTAAACCACAAGTGCAAAAGCTGCCTCAACAGCAAACCAGTTAAGTATCAACTCTGTGA
JMSF027C13+ GTTAAACCACAAGTGCAAAAGCTGCCTCAACAGCAAACCAGTTAAGTATCAACTCTGTGA
rJMSF021G09- GTTAAACCACAAGTGCAAAAGCTGCCTCAACAGCAAACCAGTTAAGTATCAACTCTGTGA
JMSF021G09+ GTTAAACCACAAGTGCAAAAGCTGCCTCAACAGCAAACCAGTTAAGTATCAACTCTGTGA
____________________________________________________________
consensus GTTAAACCACAAGTGCAAAAGCTGCCTCAACAGCAAACCAGTTAAGTATCAACTCTGTGA
. : . : . : . : . : . :
JMSF024M13+ TTTTATTAATTTGTGAAAGTCGAAATATAACTTCACTGGGGAAAACGGGGAAAACACTAA
JMSF050G09+ TTTTATTAATTTGTGAAAGTCGAAATATAACTTCACTGGGGAAAACGGGGAAAACACTAA
rJMSF050G09- TTTTATTAATTTGTGAAAGTCGAAATATAACTTCACTGGGGAAAACGGGGAAAACACTAA
rJMSF024M13- TTTTATTAATTTGTGAAAGTCGAAATATAACTTCACTGGGGAAAACGGGGAAAACACTAA
JMSF027C13+ TTTTATTAATTTGTGAAAGTCGAAATATAACTTCACTGGGGAAAACGGGGAAAACACTAA
rJMSF021G09- TTTTATTAATTTGTGAAAGTCGAAATATAACTTCACTGGGGAAAACGGGGAAAACACTAA
JMSF021G09+ TTTTATTAATTTGTGAAAGTCGAAATATAACTTCACTGGGGAAAACGGGGAAAACACTAA
____________________________________________________________
consensus TTTTATTAATTTGTGAAAGTCGAAATATAACTTCACTGGGGAAAACGGGGAAAACACTAA
. : . : . : . : . : . :
JMSF024M13+ ACATGGATCGGAA-TTTTCTTCCAGTGCACGGGTACCTCCTCAAATCTTAAATCATTT
JMSF050G09+ ACATGGATCGGAATTTTTCTTCCAGTGCACGGGTACCTCCTCAAATCTTAAATCATTTCC
rJMSF050G09- ACATGGATCGGAATTTTTCTTCCAGTGCACGGGTACCTCCTCAAATCTTAAATCATTTCC
rJMSF024M13- ACATGGATCGGAA-TTTTCTTCCAGTGCACGGGTACCTCCTCAAATCTTAAATCATTT
JMSF027C13+ ACATGGATCGGAA-TTTTCTTCCAGTGCACGGGTACCTCCTCAAATCTTAAATCATTT
rJMSF021G09- ACATGGATCGGAA-TTTTCTTCCAGTGCACGGGTACCTCCTCAAATCTTAAATCATTTCC
JMSF021G09+ ACATGGATCGGAA-TTTTCTTCCAGTGCACGGGTACCTCCTCAAATCTTAAATCATTTCC
____________________________________________________________
consensus ACATGGATCGGAA-TTTTCTTCCAGTGCACGGGTACCTCCTCAAATCTTAAATCATTTCC
. : . : . : . : . : . :
JMSF050G09+ TCGAGAAAGGATCAACCTTAATCATTGTCTTCCTTGCCATAGTTATATATTATCTCAATC
rJMSF050G09- TCGAGAAAGGATCAACCTTAATCATTGTCTTCCTTGCCATAGTTATATATTATCTCAATC
rJMSF021G09- TCGAGAAAGGATCAACCTTAATCATTGTCTTCCTTGCCATAGTTATATATTATCTCAATC
JMSF021G09+ TCGAGAAAGGATCAACCTTAATCATTGTCTTCCTTGCCATAGTTATATATTATCTCAATC
JMSF049P18+ GAAAGGATCAACCTTAATCATTGTCTTCCTTGCCATAGTTATATATTATCTCAATC
____________________________________________________________
consensus TCGAGAAAGGATCAACCTTAATCATTGTCTTCCTTGCCATAGTTATATATTATCTCAATC
. : . : . : . : . : . :
JMSF050G09+ CCAGCAGGCGGCACTGGATTTCGGTTAAACTTGCTACCACCAGGAGCCCATGGAACAATA
rJMSF050G09- CCAGCAGGCGGCACTGGATTTCGGTTAAACTTGCTACCACCAGGAGCCCATGGAACAATA
rJMSF021G09- CCAGCAGGCGGCACTGGATTTCGGTTAAACTTGCTACCACCAGGAGCCCATGGAACAATA
JMSF021G09+ CCAGCAGGCGGCACTGGATTTCGGTTAAACTTGCTACCACCAGGAGCCCATGGAACAATA
JMSF049P18+ CCAGCAGGCGGCACTGGATTTCGGTTAAACTTGCTACCACCAGGAGCCCATGGAACAATA
____________________________________________________________
consensus CCAGCAGGCGGCACTGGATTTCGGTTAAACTTGCTACCACCAGGAGCCCATGGAACAATA
. : . : . : . : . : . :
JMSF050G09+ TAAGGATCAGGATGCCGCCACTTATTATAAGTAGCTTCACCATCGTCTATCATTCTATCA
rJMSF050G09- TAAGGATCAGGATGCCGCCACTTATTATAAGTAGCTTCACCATCGTCTATCATTCTATCA
rJMSF021G09- TAAGGATCAGGATGCCGCCACTTATTATAAGTAGCTTCACCATCGTCTATCATTCTATCA
JMSF021G09+ TAAGGATCAGGATGCCGCCACTTATTATAAGTAGCTTCACCATCGTCTATCATTCTATCA
JMSF049P18+ TAAGGATCAGGATGCCGCCACTTATTATAAGTAGCTTCACCATCGTCTATCATTCTATCA
____________________________________________________________
consensus TAAGGATCAGGATGCCGCCACTTATTATAAGTAGCTTCACCATCGTCTATCATTCTATCA
. : . : . : . : . : . :
JMSF050G09+ ATTGTTTCAACATCTTCCACGTGTTTGTTAGCGTCGAACCTCTCCCTGAGAGCATCGGCA
rJMSF050G09- ATTGTTTCAACATCTTCCACGTGTTTGTTAGCGTCGAACCTCTCCCTGAGAGCATCGGCA
rJMSF021G09- ATTGTTTCAACATCTTCCACGTGTTTGTTAGCGTCGAACCTCTCCCTGAGAGCATCGGCA
JMSF021G09+ ATTGTTTCAACATCTTCCACGTGTTTGTTAGCGTCGAACCTCTCCCTGAGAGCATCGGCA
JMSF049P18+ ATTGTTTCAACATCTTCCACGTGTTTGTTAGCGTCGAACCTCTCCCTGAGAGCATCGGCA
____________________________________________________________
consensus ATTGTTTCAACATCTTCCACGTGTTTGTTAGCGTCGAACCTCTCCCTGAGAGCATCGGCA
. : . : . : . : . : . :
JMSF050G09+ TCGGGATAGAAGAGGTGGCGATGGACCGCCCAGGTGAGAGTGTCTTTCAAGGCGCGGCGG
rJMSF050G09- TCGGGATAGAAGAGGTGGCGATGGACCGCCCAGGTGAGAGTGTCTTTCAAGGCGCGGCGG
rJMSF021G09- TCGGGATAGAAGAGGTGGCGATGGACCGCCCAGGTGAGAGTGTCTTTCAAGGCGCGGCGG
JMSF021G09+ TCGGGATAGAAGAGGTGGCGATGGACCGCCCAGGTGAGAGTGTCTTTCAAGGCGCGGCGG
JMSF049P18+ TCGGGATAGAAGAGGTGGCGATGGACCGCCCAGGTGAGAGTGTCTTTCAAGGCGCGGCGG
____________________________________________________________
consensus TCGGGATAGAAGAGGTGGCGATGGACCGCCCAGGTGAGAGTGTCTTTCAAGGCGCGGCGG
. : . : . : . : . : . :
JMSF050G09+ TAGAGAATCCGCACTCTCTCCTTCTGCGCTGCTCTCCGAGCTAGAAACGACACTGATGCT
rJMSF050G09- TAGAGAATCCGCACTCTCTCCTTCTGCGCTGCTCTCCGAGCTAGAAACGACACTGATGCT
rJMSF021G09- TAGAGAATCCGCACTCTCTCCTTCTGCGCTGCTCTCCGAGCTAGAAACGACACTGATGCT
JMSF021G09+ TAGAGAATCCGCACTCTCTCCTTCTGCGCTGCTCTCCGAGCTAGAAACGACACTGATGCT
JMSF049P18+ TAGAGAATCCGCACTCTCTCCTTCTGCGCTGCTCTCCGAGCTAGAAACGACACTGATGCT
____________________________________________________________
consensus TAGAGAATCCGCACTCTCTCCTTCTGCGCTGCTCTCCGAGCTAGAAACGACACTGATGCT
. : . : . : . : . : . :
JMSF050G09+ ACAGCTCCACTCATCTCTCTCTCTTTCTCTCTTC
rJMSF050G09- ACAGCTCCACTCATCTCTCTCTCTTTCTCTCTTC
rJMSF021G09- ACAGCTCCACTCATCTCTCTCTCTTTCTCTCTTC
JMSF021G09+ ACAGCTCCACTCATCTCTCTCTCTTTCTCTCTTC
JMSF049P18+ ACAGCTCCACTCATCTCTCTCTCTTTCTCTCTTCGCCTGTTACTCTCTTCTCTCTACCCA
____________________________________________________________
consensus ACAGCTCCACTCATCTCTCTCTCTTTCTCTCTTCGCCTGTTACTCTCTTCTCTCTACCCA