Contig 013550:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018J11Sequence515013550 (2)ref|XP_002300673.2|1e-35hypothetical protein POPTR_0002s01580g [Populus trichocarpa] gb|EEE79946.2| hypo756012584 (2)
JMSF048N18Sequence698013550 (2)ref|XP_002510619.1|1e-81pseudouridylate synthase, putative [Ricinus communis] gb|EEF52806.1| pseudouridy759012584 (2)ref|XP_002510619.1|7e-19pseudouridylate synthase, putative [Ricinus communis] gb|EEF52806.1| pseudouridy

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF048N18+ CCTATCGCGATGAGCAGATGGGTCGAGAGCAAAAACAG
                      ____________________________________________________________
consensus CCTATCGCGATGAGCAGATGGGTCGAGAGCAAAAACAG
 
. : . : . : . : . : . :
JMSF048N18+ GGATTAAGTACACATACCTCCGCCGATCACAGAACTTCTTAGCATTAAACGACGCCGTCG
                      ____________________________________________________________
consensus GGATTAAGTACACATACCTCCGCCGATCACAGAACTTCTTAGCATTAAACGACGCCGTCG
 
. : . : . : . : . : . :
JMSF048N18+ TCCGCTTGTAACCGAAGATACGAATCTGGGAAGCGAGGTTCGAGTTGAGGCGATCGACCA
                      ____________________________________________________________
consensus TCCGCTTGTAACCGAAGATACGAATCTGGGAAGCGAGGTTCGAGTTGAGGCGATCGACCA
 
. : . : . : . : . : . :
JMSF018J11+ CCAGGAGGATCAATGTAAAACCGACCCGAAACGACTTGCCCCACTGCGCTGACGCCCT
JMSF048N18+ AGCCAGGAGGATCAATGTAAAACCGACCCGAAACGACTTGCCCCACTGCGCTGACGCCCT
                      ____________________________________________________________
consensus AGCCAGGAGGATCAATGTAAAACCGACCCGAAACGACTTGCCCCACTGCGCTGACGCCCT
 
. : . : . : . : . : . :
JMSF018J11+ NATCGGTCCGGGCGGAGCGCGCCCAGTCATACCGCCTGGGCTGGCCCCTATCTTGCTCCG
JMSF048N18+ TATCGGTCCGGGCGGAGCGCGCCCAGTCATACCGCCTGGGCTGGCCCCTATCTTGCTCCG
                      ____________________________________________________________
consensus TATCGGTCCGGGCGGAGCGCGCCCAGTCATACCGCCTGGGCTGGCCCCTATCTTGCTCCG
 
. : . : . : . : . : . :
JMSF018J11+ GCACCGCGCCGGCGTGGAAGAGCGCTTCTTCGAGGTCGCCTTCGATCGTTTTGGCTCCGG
JMSF048N18+ GCACCGCGCCGGCGTGGAAGAGCGCTTCTTCGAGGTCGCCTTCGATCGTTTTGGCTCCGG
                      ____________________________________________________________
consensus GCACCGCGCCGGCGTGGAAGAGCGCTTCTTCGAGGTCGCCTTCGATCGTTTTGGCTCCGG
 
. : . : . : . : . : . :
JMSF018J11+ GATTCTTCTGCATGCCCTGATACCCCACCCCGCAGTACGCGAAGAAGATCGCGATTTTGC
JMSF048N18+ GATTCTTCTGCATGCCCTGATACCCCACCCCGCAGTACGCGAAGAAGATCGCGATTTTGC
                      ____________________________________________________________
consensus GATTCTTCTGCATGCCCTGATACCCCACCCCGCAGTACGCGAAGAAGATCGCGATTTTGC
 
. : . : . : . : . : . :
JMSF018J11+ GACGCTTGTACTTGGGTTTCCTCTCCGGTGGAGCACTGCCGTCTGCGGCGGCGACGGCCG
JMSF048N18+ GACGCTTGTACTTGGGTTTCCTCTCCGGTGGAGCACTGCCGTCTGCGGCGGCGACGGCCG
                      ____________________________________________________________
consensus GACGCTTGTACTTGGGTTTCCTCTCCGGTGGAGCACTGCCGTCTGCGGCGGCGACGGCCG
 
. : . : . : . : . : . :
JMSF018J11+ GGTCAAATTCTTCATCGTCAGAGGTTGTGGTGGTGGACATCTTCTGCTTCTTTGGAGCCG
JMSF048N18+ GGTCAAATTCTTCATCGTCAGAGGTTGTGGTGGTGGACATCTTCTGCTTCTTTGGAGCCG
                      ____________________________________________________________
consensus GGTCAAATTCTTCATCGTCAGAGGTTGTGGTGGTGGACATCTTCTGCTTCTTTGGAGCCG
 
. : . : . : . : . : . :
JMSF018J11+ GCTCTTCTGGTAGGGGTGAAGGAGGGTTTGGTTTATCCATTTTCAGTGAAAGAGTATAAA
JMSF048N18+ GCTCTTCTGGTAGGGGTGAAGGAGGGTTTGGTTTATCCATTTTCAGTGAAAGAGTATAAA
                      ____________________________________________________________
consensus GCTCTTCTGGTAGGGGTGAAGGAGGGTTTGGTTTATCCATTTTCAGTGAAAGAGTATAAA
 
. : . : . : . : . : . :
JMSF018J11+ TTTCTAGCAATGGCTGCTCGTCCCTGTCGACAAAAAACCCTAAAGAAACTGCTCTTTTGG
JMSF048N18+ TTTCTAGCAATGGCTGCTCGTCCCTGTCGACAAAAAACCCTAAAGAAACTGCTCTTTTGG
                      ____________________________________________________________
consensus TTTCTAGCAATGGCTGCTCGTCCCTGTCGACAAAAAACCCTAAAGAAACTGCTCTTTTGG
 
. : . : . : . : . : . :
JMSF018J11+ GCTAACACTTCACGCTTCTCCGGGTTGTACCTTTCT
JMSF048N18+ GCTAACACTTCACGCTTCTCCGGGTTGTACCTTTCTACTCCGTGTGCTGTACCACCGGGC
                      ____________________________________________________________
consensus GCTAACACTTCACGCTTCTCCGGGTTGTACCTTTCTACTCCGTGTGCTGTACCACCGGGC