Contig 013544:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006P18Sequence248013544 (3)ref|XP_006344237.1|7e-28PREDICTED: micronuclear linker histone polyprotein-like isoform X1 [Solanum tub
JMSF021O10Sequence646013544 (3)ref|XP_009630696.1|7e-50PREDICTED: uncharacterized protein LOC104120604 isoform X1 [Nicotiana tomentosi
JMSF047O16Sequence643013544 (3)ref|XP_009630696.1|1e-36PREDICTED: uncharacterized protein LOC104120604 isoform X1 [Nicotiana tomentosi751022655ref|XP_009786581.1|57.8PREDICTED: uncharacterized protein LOC104234674 [Nicotiana sylvestris] ref|XP_00

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF021O10+ CTTCGGTGGCGTGAATTTCTGACTCGGGATTGACTGTC
                      ____________________________________________________________
consensus CTTCGGTGGCGTGAATTTCTGACTCGGGATTGACTGTC
 
. : . : . : . : . : . :
JMSF021O10+ CCGGTAACCCGAGAACAACCCTCTTCTCGTTCACCTTCAGTCAATTCATTCTCGCCATCA
                      ____________________________________________________________
consensus CCGGTAACCCGAGAACAACCCTCTTCTCGTTCACCTTCAGTCAATTCATTCTCGCCATCA
 
. : . : . : . : . : . :
JMSF021O10+ AACACTGATCCATCACGACTCTGTGCAGAATAACCACAATCATTGAAATGCTCGAAATCC
                      ____________________________________________________________
consensus AACACTGATCCATCACGACTCTGTGCAGAATAACCACAATCATTGAAATGCTCGAAATCC
 
. : . : . : . : . : . :
JMSF021O10+ CCCTCGTACCCTGTACTCTCGGTCACACTAAAGTGTGCAGATTGCCCCGTGCTATTAACA
JMSF047O16+ CTCGGTCACACTAAAGTGTGCAGANTGCCCCGTGCTATTAACA
                      ____________________________________________________________
consensus CCCTCGTACCCTGTACTCTCGGTCACACTAAAGTGTGCAGATTGCCCCGTGCTATTAACA
 
. : . : . : . : . : . :
JMSF021O10+ TTCTCATCGTCCCGCTCACTATGAGCATTATTCTCAGATAGATCATTCCCGCTAGTTTGG
JMSF047O16+ TTCTCATCGTCCCGCTCACTATGAGCNNTATTCTCAGATAGATCATTCCCGCTAGTTTGG
                      ____________________________________________________________
consensus TTCTCATCGTCCCGCTCACTATGAGCATTATTCTCAGATAGATCATTCCCGCTAGTTTGG
 
. : . : . : . : . : . :
JMSF021O10+ CACTCCGCTCCACCACTATTACGAGACTCGCAAGAACTCTGGCTTAAAAGCGCCCTCCGT
JMSF047O16+ CACTCCGCTCCACCACTATTACGAGACTCGCAAGAACTCTGGNTTAAAAGCGCCCTCCGT
                      ____________________________________________________________
consensus CACTCCGCTCCACCACTATTACGAGACTCGCAAGAACTCTGGCTTAAAAGCGCCCTCCGT
 
. : . : . : . : . : . :
JMSF006P18+ CTCAATTACAGAACCCGGCTTCGAATATCTC
JMSF021O10+ TTAAAATGAGCCTCGAGTATCGCCTTTTTCTCAATTACAGAACCCGGCTTCGAATATCTC
JMSF047O16+ TTAAAATGAGCCTCGAGTATCGCCTTTTTCTCAATTACAGANCCCGGCTTCGAATATCTC
                      ____________________________________________________________
consensus TTAAAATGAGCCTCGAGTATCGCCTTTTTCTCAATTACAGAACCCGGCTTCGAATATCTC
 
. : . : . : . : . : . :
JMSF006P18+ TCCACCTCTTCAAGGTACCTGTTATGCGAGAAAGAAGACCTCCTCTCCCAACACAAATCC
JMSF021O10+ TCCACCTCTTCAAGGTACCTGTTATGCGAGAAAGAAGACCTCCTCTCCCAACACAAATCC
JMSF047O16+ TCCACCTCTTCAAGGTACCTGTTATGCGAGANAGAAGACCTCNTCTCCCAACACAAATCN
                      ____________________________________________________________
consensus TCCACCTCTTCAAGGTACCTGTTATGCGAGAAAGAAGACCTCCTCTCCCAACACAAATCC
 
. : . : . : . : . : . :
JMSF006P18+ TCATTCTTAAACCGCCCAAATGAGATCGAACCCGAGTGAAGAGAATCCGCCTGGAAATTA
JMSF021O10+ TCATTCTTAAACCGCCCAAATGAGATCGAACCCGAGTGAAGAGAATCCGCCTGGAAATTA
JMSF047O16+ TCNTTNTTAAACCGCCCAAATGAGATCGAACCCGAGTGAAGAGANTCCGCCNGGAAATTA
                      ____________________________________________________________
consensus TCATTCTTAAACCGCCCAAATGAGATCGAACCCGAGTGAAGAGAATCCGCCTGGAAATTA
 
. : . : . : . : . : . :
JMSF006P18+ TGCCTGAAAGGCTCTTCAATCTCACCCGCCATTTTCAACTGATAACCCCCCAATTCACAC
JMSF021O10+ TGCCTGAAAGGCTCTTCAATCTCACCCGCCATTTTCAACTGATAACCCCCCAATTCACAC
JMSF047O16+ TGCNTGAAAGGCTCTTCAATCTCNCCCGCCATTTTCAACTGATAACCCCCCAATTCACAC
                      ____________________________________________________________
consensus TGCCTGAAAGGCTCTTCAATCTCACCCGCCATTTTCAACTGATAACCCCCCAATTCACAC
 
. : . : . : . : . : . :
JMSF006P18+ CCTTTTT
JMSF021O10+ CCTTTTT
JMSF047O16+ CCTTTTTNTGCATTTTTCAGTNACCGACAATAATTAAAACTCANCCCACAAATTATAGAT
                      ____________________________________________________________
consensus CCTTTTTNTGCATTTTTCAGTNACCGACAATAATTAAAACTCANCCCACAAATTATAGAT
 
. : . : . : . : . : . :
JMSF047O16+ ANTAAATTTTTTAAAATTAAATAAATAAATTACANGCNCACACAATATCCAAAGANGAAA
                      ____________________________________________________________
consensus ANTAAATTTTTTAAAATTAAATAAATAAATTACANGCNCACACAATATCCAAAGANGAAA
 
. : . : . : . : . : . :
JMSF047O16+ TCCACTGCCAAAAATGTGTGAGCANACANTCGGAAAAAAAGATGAAAACCATCAACTTAA
                      ____________________________________________________________
consensus TCCACTGCCAAAAATGTGTGAGCANACANTCGGAAAAAAAGATGAAAACCATCAACTTAA
 
. : . : . : . : . : . :
JMSF047O16+ ATGGNNTATATAAAACANCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATCACATC
                      ____________________________________________________________
consensus ATGGNNTATATAAAACANCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATCACATC