Contig 013540:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002F02Sequence401013540 (2)ref|NP_001057345.1|2e-43Os06g0266100 [Oryza sativa Japonica Group] dbj|BAF19259.1| Os06g0266100, partial732010086 (2)ref|NP_001234444.1|1e-5330S ribosomal protein S16 [Solanum lycopersicum] dbj|BAG49073.1| 30S ribosomal p
JMSF047E06Sequence660013540 (2)gb|ADB85304.1|8e-80putative retrotransposon protein [Phyllostachys edulis]806010086 (2)ref|NP_001234444.1|4e-5230S ribosomal protein S16 [Solanum lycopersicum] dbj|BAG49073.1| 30S ribosomal p

Alignment

This contig is upended


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JMSF047E06+           TGCAGCGCAATTCCTGATCAAGCTTGGGCACAGGTATCCATGGATTTTATTGAAGGGTTA
                      ____________________________________________________________
consensus             TGCAGCGCAATTCCTGATCAAGCTTGGGCACAGGTATCCATGGATTTTATTGAAGGGTTA
 
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JMSF047E06+           CCTAAGTCCAACAATAAAAATGTTATAATGGTGGTGGTGGACAGATTCACTAAGTATGCT
                      ____________________________________________________________
consensus             CCTAAGTCCAACAATAAAAATGTTATAATGGTGGTGGTGGACAGATTCACTAAGTATGCT
 
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JMSF002F02+                                  CTTCACTGCAGAGAAAGTGGCTAACTTATACATGGAA
JMSF047E06+           CATTTCATCAGCTTATCTCACCCCTTCACTGCAGAGAAAGTGGCTAACTTATACATGGAA
                      ____________________________________________________________
consensus             CATTTCATCAGCTTATCTCACCCCTTCACTGCAGAGAAAGTGGCTAACTTATACATGGAA
 
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JMSF002F02+           AATGTGTATAAGTTGCATGGGATACCACAAGGGATTGTGTCAGACAGGGACAAGATCTTT
JMSF047E06+           AATGTGTATAAGTTGCATGGGATACCACAAGGGATTGTGTCAGACAGGGACAAGATCTTT
                      ____________________________________________________________
consensus             AATGTGTATAAGTTGCATGGGATACCACAAGGGATTGTGTCAGACAGGGACAAGATCTTT
 
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JMSF002F02+           CTCAGCAAGTTTTGGAAAGGGGCCTTTAGAAGGATGGGGACTCAGCAACACATGAGCTCC
JMSF047E06+           CTCAGCAAGTTTTGGAAAGGGGCCTTTAGAAGGATGGGGACTCAGCAACACATGAGCTCC
                      ____________________________________________________________
consensus             CTCAGCAAGTTTTGGAAAGGGGCCTTTAGAAGGATGGGGACTCAGCAACACATGAGCTCC
 
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JMSF002F02+           TCCTATCACCCCAAGTCAGATGGACAAACAGAAAGGATTAATAGGTGTTTGGAAACTTAC
JMSF047E06+           TCCTATCACCCCAAGTCAGATGGACAAACAGAAAGGATTAATAGGTGTTTGGAAACTTAC
                      ____________________________________________________________
consensus             TCCTATCACCCCAAGTCAGATGGACAAACAGAAAGGATTAATAGGTGTTTGGAAACTTAC
 
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JMSF002F02+           CTAAGGTGCATGAGGTCTCACAAACCTAAAGAGTGGGAGAATTGGCTTGCCTTGGCAGAA
JMSF047E06+           CTAAGGTGCATGAGGTCTCACAAACCTAAAGAGTGGGAGAATTGGCTTGCCTTGGCAGAA
                      ____________________________________________________________
consensus             CTAAGGTGCATGAGGTCTCACAAACCTAAAGAGTGGGAGAATTGGCTTGCCTTGGCAGAA
 
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JMSF002F02+           CACTAGTATAACACCAACTACCACTGCTCATTGAGAATGTCTCCCTTCCAGGCCCTGTAT
JMSF047E06+           CACTAGTATAACACCAACTACCACTGCTCATTGAGAATGTCTCCCTTCCAGGCCCTGTAT
                      ____________________________________________________________
consensus             CACTAGTATAACACCAACTACCACTGCTCATTGAGAATGTCTCCCTTCCAGGCCCTGTAT
 
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JMSF002F02+           GGGTATCCACCTCCACAGTTGGCT                                    
JMSF047E06+           GGGTATCCACCTCCACAGTTGGCTGTAAATGATGCAACAAGGGTTGCAGATGAGAATGTA
                      ____________________________________________________________
consensus             GGGTATCCACCTCCACAGTTGGCTGTAAATGATGCAACAAGGGTTGCAGATGAGAATGTA
 
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JMSF047E06+           GAGAGTTGGGTTCAAGAGAGAATGCATATGATGAGAGTACTTAAAGAAAATCTGAGGGTA
                      ____________________________________________________________
consensus             GAGAGTTGGGTTCAAGAGAGAATGCATATGATGAGAGTACTTAAAGAAAATCTGAGGGTA
 
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JMSF047E06+           GCACAGCAGAGAATGAAACACTATGCGGACAGAAATAGAACTGAGAGGGCATTTGCAGCC
                      ____________________________________________________________
consensus             GCACAGCAGAGAATGAAACACTATGCGGACAGAAATAGAACTGAGAGGGCATTTGCAGCC