Contig 013520:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF043F24Sequence723013520 (2)ref|XP_010317056.1|157PREDICTED: uncharacterized protein LOC101244833 [Solanum lycopersicum]798013520 (2)ref|XP_006365014.1|85.5PREDICTED: uncharacterized protein LOC102581952 [Solanum tuberosum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043F24-                                     AGAAGGAGGCAAAACAGTATTCATGTATGAGTT
                      ____________________________________________________________
consensus                                        AGAAGGAGGCAAAACAGTATTCATGTATGAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043F24-          ACATTATGAGGTTTCAGATTGTGATGACAATGATGATATATTAGCATAGCTAGCTTGCAC
                      ____________________________________________________________
consensus             ACATTATGAGGTTTCAGATTGTGATGACAATGATGATATATTAGCATAGCTAGCTTGCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043F24-          AACGAAATAATCCCAGAGCCGCTGTGCAAAAATCTTTACAAGTAGATACAACTCGAACCA
                      ____________________________________________________________
consensus             AACGAAATAATCCCAGAGCCGCTGTGCAAAAATCTTTACAAGTAGATACAACTCGAACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043F24-          AGTACATTGTACAAGTGAGTAACAAAGAATCTAAAGATACCCATCCCTCTTGTCTTGCTC
                      ____________________________________________________________
consensus             AGTACATTGTACAAGTGAGTAACAAAGAATCTAAAGATACCCATCCCTCTTGTCTTGCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043F24-          ATCTGCCTCCTTGTTAGCGGCTTGAACCGATTTGAACCAAAGAAATCCCTGGATTTAACA
                      ____________________________________________________________
consensus             ATCTGCCTCCTTGTTAGCGGCTTGAACCGATTTGAACCAAAGAAATCCCTGGATTTAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043F24-          TTCTTTTCAACCAAATTATCTATGCATTTGTGCTCATGTAGCTTCAATAAAACCTAAGCT
JMSF043F24+                                                                    GCT
                      ____________________________________________________________
consensus             TTCTTTTCAACCAAATTATCTATGCATTTGTGCTCATGTAGCTTCAATAAAACCTAAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043F24-          AGATTGTCACATTTGTTTTTTCATGGATTGACATGGGAAAAGGGATACAACTTTCCAGAC
JMSF043F24+           AGATTGTCACATTTGTTTTTTCATGGATTGACATGGGAAAAGGGATACAACTTTCCAGAC
                      ____________________________________________________________
consensus             AGATTGTCACATTTGTTTTTTCATGGATTGACATGGGAAAAGGGATACAACTTTCCAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043F24-          ATTTATCATACCATTCATACATTCCAACTTTTTAAAATTTGATCATTTGAAAGATTAACA
JMSF043F24+           ATTTATCATACCATTCATACATTCCAACTTTTTAAAATTTGATCATTTGAAAGATTAACA
                      ____________________________________________________________
consensus             ATTTATCATACCATTCATACATTCCAACTTTTTAAAATTTGATCATTTGAAAGATTAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043F24-          GAACCAACTAAACTAAAAGGCAAAACTAGGAACACAAAAATTTTGCAGAAACCCATTAGC
JMSF043F24+           GAACCAACTAAACTAAAAGGCAAAACTAGGAACACAAAAATTTTGCAGAAACCCATTAGC
                      ____________________________________________________________
consensus             GAACCAACTAAACTAAAAGGCAAAACTAGGAACACAAAAATTTTGCAGAAACCCATTAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043F24-          AAGGTCACAAGGATAACTAGAGAAAATGAAAGACTTACAGAAGTGGGAATGCCTGTGAAA
JMSF043F24+           AAGGTCACAAGGATAACTAGAGAAAATGAAAGACTTACAGAAGTGGGAATGCCTGTGAAA
                      ____________________________________________________________
consensus             AAGGTCACAAGGATAACTAGAGAAAATGAAAGACTTACAGAAGTGGGAATGCCTGTGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043F24-          ACAAAGAACCCAAGTAGAGGAGCATAAAATGCACTATCGGGGCTCACAACTCCAAAAACG
JMSF043F24+           ACAAAGAACCCAAGTAGAGGAGCATAAAATGCACTATCGGGGCTCACAACTCCAAAAACG
                      ____________________________________________________________
consensus             ACAAAGAACCCAAGTAGAGGAGCATAAAATGCACTATCGGGGCTCACAACTCCAAAAACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043F24-          GGTTTTTGATTCACATACTCAAAAATCGAACCGATAGCAGCAATGGCAGTGATAGCTGAG
JMSF043F24+           GGTTTTTGATTCACATACTCAAAAATCGAACCGATAGCAGCAATGGCAGTGATAGCTGAG
                      ____________________________________________________________
consensus             GGTTTTTGATTCACATACTCAAAAATCGAACCGATAGCAGCAATGGCAGTGATAGCTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043F24-          GCCAGAAGATACACATAGAAGGGAACCTCAAAGCTGGAAGAATCTTTCTGGG        
JMSF043F24+           GCCAGAAGATACACATAGAAGGGAACCTCAAAGCTGGAAGAATCTTTCTGGGACTCATTT
                      ____________________________________________________________
consensus             GCCAGAAGATACACATAGAAGGGAACCTCAAAGCTGGAAGAATCTTTCTGGGACTCATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043F24+           CTGGCCCACGGGGGCGGCTCTTCTGACCCGGGTTTGGCCCAAGAGGGAACTGAAGGGTCT
                      ____________________________________________________________
consensus             CTGGCCCACGGGGGCGGCTCTTCTGACCCGGGTTTGGCCCAAGAGGGAACTGAAGGGTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043F24+           TCTTCTCCTTCTTTGCTTGTGTTCTTAGCAGAGCCCTCTGTGACGGCCAAAACTCTAAAC
                      ____________________________________________________________
consensus             TCTTCTCCTTCTTTGCTTGTGTTCTTAGCAGAGCCCTCTGTGACGGCCAAAACTCTAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043F24+           CTCCTTTGACTGTGGGAAGAGCTTCTCTTCTTGGGTGTGGTGAAATGGAGAGAATTGGGT
                      ____________________________________________________________
consensus             CTCCTTTGACTGTGGGAAGAGCTTCTCTTCTTGGGTGTGGTGAAATGGAGAGAATTGGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043F24+           TTGGTTGAAGAACAATGGAGTGGTGAATGTGAGGTCGGGCAGCAGAGAGATAGTGTGGCT
                      ____________________________________________________________
consensus             TTGGTTGAAGAACAATGGAGTGGTGAATGTGAGGTCGGGCAGCAGAGAGATAGTGTGGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043F24+           AGCGTCGCCATGGCTATTGCTTTTGAGTTTTGGCCCTAAAGGAACCAATGGCTGATGTCC
                      ____________________________________________________________
consensus             AGCGTCGCCATGGCTATTGCTTTTGAGTTTTGGCCCTAAAGGAACCAATGGCTGATGTCC