Contig 013518:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011C20Sequence302013518 (2)749011406 (2)ref|XP_009797484.1|3e-69PREDICTED: uncharacterized protein LOC104243907 isoform X3 [Nicotiana sylvestri
JMSF043E15Sequence775013518 (2)ref|XP_009603414.1|6e-62PREDICTED: YTH domain-containing family protein 2-like isoform X1 [Nicotiana to800011406 (2)ref|XP_009797484.1|2e-56PREDICTED: uncharacterized protein LOC104243907 isoform X3 [Nicotiana sylvestri

Alignment

This contig is upended


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JMSF043E15+                AGGCGCCCCAGCACCAACATGACTTTGATTTACTTTGGTGGTGTCCCCAATCAAT
                      ____________________________________________________________
consensus                  AGGCGCCCCAGCACCAACATGACTTTGATTTACTTTGGTGGTGTCCCCAATCAAT
 
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JMSF043E15+           TGCACTTTGTCAGGTGCAATTGGAGTTGGGACTTCAGACTGGGGAGCATAAGGCTTGTTT
                      ____________________________________________________________
consensus             TGCACTTTGTCAGGTGCAATTGGAGTTGGGACTTCAGACTGGGGAGCATAAGGCTTGTTT
 
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JMSF043E15+           GTTGAGAAAGTTCCACTAGTAGTAGACGATTGAAAATAAGTAGTTGGATATTGGTATTGC
                      ____________________________________________________________
consensus             GTTGAGAAAGTTCCACTAGTAGTAGACGATTGAAAATAAGTAGTTGGATATTGGTATTGC
 
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JMSF043E15+           TGAGCACCATACATCTGGTTATCATGCTCAACGTGTGAGCCTGATGGAGAATATGTTCCA
                      ____________________________________________________________
consensus             TGAGCACCATACATCTGGTTATCATGCTCAACGTGTGAGCCTGATGGAGAATATGTTCCA
 
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JMSF043E15+           TATGGAGCATAACCATACCCATGATAGTCACCATACATGCTTGGAGGCAGTTCAACTCTG
                      ____________________________________________________________
consensus             TATGGAGCATAACCATACCCATGATAGTCACCATACATGCTTGGAGGCAGTTCAACTCTG
 
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JMSF043E15+           TCAGGATTTAAAAATCTATCCCATTCATTGGTTGAGGAACCATCATAACCTCTGTAGTAA
                      ____________________________________________________________
consensus             TCAGGATTTAAAAATCTATCCCATTCATTGGTTGAGGAACCATCATAACCTCTGTAGTAA
 
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JMSF043E15+           TATGTTGAGGATGGATATCCATTAGGGTTATAGAACATGCTAGGACCCATGAAATCCTGT
                      ____________________________________________________________
consensus             TATGTTGAGGATGGATATCCATTAGGGTTATAGAACATGCTAGGACCCATGAAATCCTGT
 
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JMSF011C20+                                                                 CCAGAT
JMSF043E15+           TGGGAATGTGTTGTAGATCCCTCAAAGGGCTTGTTAATACCATTTGCTAAAGCACCAGAT
                      ____________________________________________________________
consensus             TGGGAATGTGTTGTAGATCCCTCAAAGGGCTTGTTAATACCATTTGCTAAAGCACCAGAT
 
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JMSF011C20+           TCAGCAGGTGCAAACCGGGCAGCTGAAGGCTTCATTGTGGTCTCCGTAGCTTGGAGGGGC
JMSF043E15+           TCAGCAGGTGCAAACCGGGCAGCTGAAGGCTTCATTGTGGTCTCCGTAGCTTGGAGGGGC
                      ____________________________________________________________
consensus             TCAGCAGGTGCAAACCGGGCAGCTGAAGGCTTCATTGTGGTCTCCGTAGCTTGGAGGGGC
 
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JMSF011C20+           TTCTCATTATCAGAATCCAATGTCAAATTCTGCAGCAACTCCTCTGCAGCTTCATCCGAC
JMSF043E15+           TTCTCATTATCAGAATCCAATGTCAAATTCTGCAGCAACTCCTCTGCAGCTTCATCCGAC
                      ____________________________________________________________
consensus             TTCTCATTATCAGAATCCAATGTCAAATTCTGCAGCAACTCCTCTGCAGCTTCATCCGAC
 
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JMSF011C20+           GGTGGGACAACGGCCGCCATGACGATCGCCGGCGTGGAATCAGGGGCTACGTCCGTTGGA
JMSF043E15+           GGTGGGACAACGGCCGCCATGATGATCGCCGGCGTGGAATCAGGCGCTACGTCCGTTGGA
                      ____________________________________________________________
consensus             GGTGGGACAACGGCCGCCATGATGATCGCCGGCGTGGAATCAGGGGCTACGTCCGTTGGA
 
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JMSF011C20+           GCTCGGGTATTCGCGTGCGGGTATAGAGATGAGAGTAGAAATGAAGGTACGAAGGGTACG
JMSF043E15+           GCTCGGGTATTCGCGTGCGGGTATAGAGATGAGAGTAGAAATGAAGGTACGAAGGGTACG
                      ____________________________________________________________
consensus             GCTCGGGTATTCGCGTGCGGGTATAGAGATGAGAGTAGAAATGAAGGTACGAAGGGTACG
 
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JMSF011C20+           GAGCGTAGGACTTGGGAAGGTATAGTTGCAGGCTGCAGGGGAAGCGCGAGCGGGC     
JMSF043E15+           GAGCGTAGGACTTGGGAAGGTATAGTTGCAGGCTGCAGGGGAAGCGCGAGCGGGCGTTTC
                      ____________________________________________________________
consensus             GAGCGTAGGACTTGGGAAGGTATAGTTGCAGGCTGCAGGGGAAGCGCGAGCGGGCGTTTC